ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 19 - 89 | 2.5e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 53 |
| AcoI | YGGCCR | 1 cut(s) | 96 |
| AcsI | RAATTY | 1 cut(s) | 203 |
| AcuI | CTGAAG | 1 cut(s) | 216 |
| AfaI | GTAC | 1 cut(s) | 39 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 105 |
| AleI | CACNNNNGTG | 1 cut(s) | 197 |
| AluBI | AGCT | 1 cut(s) | 126 |
| AluI | AGCT | 1 cut(s) | 126 |
| AoxI | GGCC | 2 cut(s) | 96, 144 |
| ApoI | RAATTY | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 1 cut(s) | 255 |
| BalI | TGGCCA | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 1 cut(s) | 147 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 105 |
| BseDI | CCNNGG | 1 cut(s) | 147 |
| BseGI | GGATG | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 105 |
| BshFI | GGCC | 2 cut(s) | 98, 146 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 105 |
| BsmI | GAATGC | 1 cut(s) | 191 |
| BsnI | GGCC | 2 cut(s) | 98, 146 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| BspANI | GGCC | 2 cut(s) | 98, 146 |
| BspHI | TCATGA | 1 cut(s) | 181 |
| BspQI | GCTCTTC | 1 cut(s) | 159 |
| BssECI | CCNNGG | 1 cut(s) | 147 |
| BssMI | GATC | 1 cut(s) | 22 |
| Bst4CI | ACNGT | 1 cut(s) | 42 |
| Bst6I | CTCTTC | 1 cut(s) | 159 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 128 |
| BstC8I | GCNNGC | 2 cut(s) | 124, 174 |
| BstF5I | GGATG | 1 cut(s) | 256 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 128, 158 |
| BsuRI | GGCC | 2 cut(s) | 98, 146 |
| BtsCI | GGATG | 1 cut(s) | 256 |
| BtsIMutI | CAGTG | 1 cut(s) | 192 |
| Cac8I | GCNNGC | 2 cut(s) | 124, 174 |
| CciI | TCATGA | 1 cut(s) | 181 |
| Csp6I | GTAC | 1 cut(s) | 38 |
| CviAII | CATG | 3 cut(s) | 100, 182, 238 |
| CviJI | RGCY | 5 cut(s) | 98, 126, 146, 152, 161 |
| CviKI_1 | RGCY | 5 cut(s) | 98, 126, 146, 152, 161 |
| CviQI | GTAC | 1 cut(s) | 38 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| EaeI | YGGCCR | 1 cut(s) | 96 |
| Eam1104I | CTCTTC | 1 cut(s) | 159 |
| EarI | CTCTTC | 1 cut(s) | 159 |
| Eco57I | CTGAAG | 1 cut(s) | 216 |
| EcoRI | GAATTC | 1 cut(s) | 203 |
| FaeI | CATG | 3 cut(s) | 103, 185, 241 |
| FaiI | YATR | 9 cut(s) | 12, 48, 53, 101, 120, 138, 140, 183, 239 |
| FatI | CATG | 3 cut(s) | 99, 181, 237 |
| FauNDI | CATATG | 1 cut(s) | 138 |
| FokI | GGATG | 1 cut(s) | 263 |
| HaeIII | GGCC | 2 cut(s) | 98, 146 |
| Hin1II | CATG | 3 cut(s) | 103, 185, 241 |
| HphI | GGTGA | 1 cut(s) | 255 |
| Hpy188I | TCNGA | 1 cut(s) | 281 |
| Hpy188III | TCNNGA | 2 cut(s) | 182, 208 |
| HpyCH4III | ACNGT | 1 cut(s) | 42 |
| HpyCH4V | TGCA | 3 cut(s) | 46, 122, 131 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 128, 158 |
| Hsp92II | CATG | 3 cut(s) | 103, 185, 241 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| LguI | GCTCTTC | 1 cut(s) | 159 |
| LpnPI | CCDG | 1 cut(s) | 147 |
| MalI | GATC | 1 cut(s) | 24 |
| MboI | GATC | 1 cut(s) | 22 |
| MboII | GAAGA | 1 cut(s) | 146 |
| MfeI | CAATTG | 1 cut(s) | 267 |
| MlsI | TGGCCA | 1 cut(s) | 98 |
| MluCI | AATT | 4 cut(s) | 33, 54, 203, 267 |
| MluNI | TGGCCA | 1 cut(s) | 98 |
| MmeI | TCCRAC | 1 cut(s) | 259 |
| MnlI | CCTC | 4 cut(s) | 136, 142, 241, 245 |
| Mox20I | TGGCCA | 1 cut(s) | 98 |
| MscI | TGGCCA | 1 cut(s) | 98 |
| MslI | CAYNNNNRTG | 1 cut(s) | 197 |
| Msp20I | TGGCCA | 1 cut(s) | 98 |
| MunI | CAATTG | 1 cut(s) | 267 |
| Mva1269I | GAATGC | 1 cut(s) | 191 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 128, 158 |
| NdeI | CATATG | 1 cut(s) | 138 |
| NdeII | GATC | 1 cut(s) | 22 |
| NlaIII | CATG | 3 cut(s) | 103, 185, 241 |
| NmeAIII | GCCGAG | 1 cut(s) | 172 |
| OliI | CACNNNNGTG | 1 cut(s) | 197 |
| PagI | TCATGA | 1 cut(s) | 181 |
| PciSI | GCTCTTC | 1 cut(s) | 159 |
| PctI | GAATGC | 1 cut(s) | 191 |
| PsiI | TTATAA | 1 cut(s) | 53 |
| RsaI | GTAC | 1 cut(s) | 39 |
| RsaNI | GTAC | 1 cut(s) | 38 |
| RseI | CAYNNNNRTG | 1 cut(s) | 197 |
| SapI | GCTCTTC | 1 cut(s) | 159 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| SetI | ASST | 1 cut(s) | 128 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 197 |
| Sse9I | AATT | 4 cut(s) | 33, 54, 203, 267 |
| TaaI | ACNGT | 1 cut(s) | 42 |
| TaqI | TCGA | 1 cut(s) | 207 |
| TasI | AATT | 4 cut(s) | 33, 54, 203, 267 |
| TatI | WGTACW | 1 cut(s) | 37 |
| TscAI | CASTG | 1 cut(s) | 199 |
| TspDTI | ATGAA | 2 cut(s) | 170, 198 |
| TspRI | CASTG | 1 cut(s) | 199 |
| XapI | RAATTY | 1 cut(s) | 203 |