Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 182 |
| AccI | GTMKAC | 1 cut(s) | 952 |
| AccII | CGCG | 1 cut(s) | 1232 |
| AciI | CCGC | 5 cut(s) | 779, 1090, 1230, 1232, 1726 |
| AclWI | GGATC | 2 cut(s) | 1529, 1565 |
| AcoI | YGGCCR | 2 cut(s) | 394, 1098 |
| AcsI | RAATTY | 3 cut(s) | 1109, 1346, 1528 |
| AcuI | CTGAAG | 1 cut(s) | 727 |
| AdeI | CACNNNGTG | 1 cut(s) | 411 |
| AfaI | GTAC | 4 cut(s) | 78, 1313, 1363, 1559 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 192, 285, 1096, 1607, 1608 |
| AgsI | TTSAA | 9 cut(s) | 266, 511, 1051, 1068, 1294, 1351, 1420, 1498, 1696 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 461, 599 |
| AjnI | CCWGG | 5 cut(s) | 116, 631, 829, 1204, 1642 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1094, 1126 |
| AleI | CACNNNNGTG | 1 cut(s) | 1034 |
| Alw21I | GWGCWC | 1 cut(s) | 1680 |
| Alw26I | GTCTC | 5 cut(s) | 147, 151, 607, 916, 979 |
| Alw44I | GTGCAC | 1 cut(s) | 1676 |
| AlwI | GGATC | 2 cut(s) | 1529, 1565 |
| AoxI | GGCC | 6 cut(s) | 206, 394, 902, 916, 1098, 1207 |
| ApaLI | GTGCAC | 1 cut(s) | 1676 |
| ApeKI | GCWGC | 7 cut(s) | 719, 896, 923, 1018, 1092, 1411, 1741 |
| ApoI | RAATTY | 3 cut(s) | 1109, 1346, 1528 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 957, 989 |
| AseI | ATTAAT | 2 cut(s) | 621, 1340 |
| AspLEI | GCGC | 1 cut(s) | 1731 |
| AspS9I | GGNCC | 8 cut(s) | 206, 326, 455, 593, 635, 858, 917, 1208 |
| AsuC2I | CCSGG | 2 cut(s) | 204, 687 |
| AsuHPI | GGTGA | 6 cut(s) | 15, 242, 268, 376, 691, 1475 |
| AsuNHI | GCTAGC | 1 cut(s) | 88 |
| AvaII | GGWCC | 5 cut(s) | 326, 455, 593, 635, 858 |
| BaeGI | GKGCMC | 3 cut(s) | 350, 1602, 1680 |
| BalI | TGGCCA | 2 cut(s) | 396, 1100 |
| BbsI | GAAGAC | 3 cut(s) | 5, 620, 698 |
| Bbv12I | GWGCWC | 1 cut(s) | 1680 |
| BbvI | GCAGC | 7 cut(s) | 706, 908, 910, 1005, 1104, 1398, 1728 |
| BccI | CCATC | 7 cut(s) | 309, 317, 395, 530, 1123, 1693, 1762 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 764, 798 |
| BciT130I | CCWGG | 5 cut(s) | 118, 633, 831, 1206, 1644 |
| BclI | TGATCA | 3 cut(s) | 243, 564, 711 |
| BcnI | CCSGG | 2 cut(s) | 204, 687 |
| BcoDI | GTCTC | 5 cut(s) | 147, 151, 607, 916, 979 |
| BfaI | CTAG | 8 cut(s) | 9, 89, 210, 239, 900, 1425, 1452, 1670 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 402 |
| BglII | AGATCT | 1 cut(s) | 1759 |
| BlpI | GCTNAGC | 1 cut(s) | 652 |
| Bme1390I | CCNGG | 7 cut(s) | 118, 204, 633, 687, 831, 1206, 1644 |
| Bme18I | GGWCC | 5 cut(s) | 326, 455, 593, 635, 858 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 461, 599 |
| BmgT120I | GGNCC | 8 cut(s) | 206, 326, 455, 593, 635, 858, 917, 1208 |
| BmiI | GGNNCC | 1 cut(s) | 207 |
| BmrFI | CCNGG | 7 cut(s) | 118, 204, 633, 687, 831, 1206, 1644 |
| BmsI | GCATC | 3 cut(s) | 29, 598, 772 |
| BmtI | GCTAGC | 1 cut(s) | 92 |
| BoxI | GACNNNNGTC | 1 cut(s) | 640 |
| BpiI | GAAGAC | 3 cut(s) | 5, 620, 698 |
| Bpu10I | CCTNAGC | 1 cut(s) | 437 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 652 |
| BpuEI | CTTGAG | 2 cut(s) | 659, 961 |
| BpuMI | CCSGG | 2 cut(s) | 204, 687 |
| BsaJI | CCNNGG | 8 cut(s) | 203, 571, 686, 1137, 1204, 1221, 1230, 1489 |
| BsaWI | WCCGGW | 1 cut(s) | 82 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1348, 1378, 1470, 1500 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 192, 285, 1096, 1607, 1608 |
| Bse1I | ACTGG | 2 cut(s) | 290, 1034 |
| Bse3DI | GCAATG | 2 cut(s) | 747, 1377 |
| BseBI | CCWGG | 5 cut(s) | 118, 633, 831, 1206, 1644 |
| BseDI | CCNNGG | 8 cut(s) | 203, 571, 686, 1137, 1204, 1221, 1230, 1489 |
| BseGI | GGATG | 2 cut(s) | 320, 787 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 192, 285, 1096, 1607, 1608 |
| BseMI | GCAATG | 2 cut(s) | 747, 1377 |
| BseMII | CTCAG | 3 cut(s) | 666, 1458, 1569 |
| BseNI | ACTGG | 2 cut(s) | 290, 1034 |
| BseSI | GKGCMC | 3 cut(s) | 350, 1602, 1680 |
| BseXI | GCAGC | 7 cut(s) | 706, 908, 910, 1005, 1104, 1398, 1728 |
| BseYI | CCCAGC | 3 cut(s) | 919, 1327, 1686 |
| BsgI | GTGCAG | 1 cut(s) | 705 |
| Bsh1236I | CGCG | 1 cut(s) | 1232 |
| BshFI | GGCC | 6 cut(s) | 208, 396, 904, 918, 1100, 1209 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1680 |
| BsiSI | CCGG | 4 cut(s) | 83, 203, 686, 915 |
| BslFI | GGGAC | 5 cut(s) | 503, 856, 1112, 1185, 1408 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 192, 285, 1096, 1607, 1608 |
| BsmAI | GTCTC | 5 cut(s) | 147, 151, 607, 916, 979 |
| BsmFI | GGGAC | 5 cut(s) | 503, 856, 1112, 1185, 1408 |
| BsnI | GGCC | 6 cut(s) | 208, 396, 904, 918, 1100, 1209 |
| Bsp1286I | GDGCHC | 3 cut(s) | 350, 1602, 1680 |
| Bsp1407I | TGTACA | 1 cut(s) | 1311 |
| Bsp143I | GATC | 7 cut(s) | 45, 243, 564, 711, 1534, 1570, 1759 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 652 |
| Bsp19I | CCATGG | 1 cut(s) | 1489 |
| BspACI | CCGC | 5 cut(s) | 779, 1090, 1230, 1232, 1726 |
| BspANI | GGCC | 6 cut(s) | 208, 396, 904, 918, 1100, 1209 |
| BspCNI | CTCAG | 3 cut(s) | 665, 1459, 1570 |
| BspFNI | CGCG | 1 cut(s) | 1232 |
| BspLI | GGNNCC | 1 cut(s) | 207 |
| BspOI | GCTAGC | 1 cut(s) | 92 |
| BspPI | GGATC | 2 cut(s) | 1529, 1565 |
| BspQI | GCTCTTC | 1 cut(s) | 167 |
| BsrDI | GCAATG | 2 cut(s) | 747, 1377 |
| BsrGI | TGTACA | 1 cut(s) | 1311 |
| BsrI | ACTGG | 2 cut(s) | 290, 1034 |
| BssECI | CCNNGG | 8 cut(s) | 203, 571, 686, 1137, 1204, 1221, 1230, 1489 |
| BssMI | GATC | 7 cut(s) | 45, 243, 564, 711, 1534, 1570, 1759 |
| BssT1I | CCWWGG | 3 cut(s) | 571, 1221, 1489 |
| Bst2UI | CCWGG | 5 cut(s) | 118, 633, 831, 1206, 1644 |
| Bst4CI | ACNGT | 6 cut(s) | 187, 562, 769, 1138, 1162, 1591 |
| Bst6I | CTCTTC | 2 cut(s) | 167, 1029 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 104 |
| BstAUI | TGTACA | 1 cut(s) | 1311 |
| BstC8I | GCNNGC | 3 cut(s) | 90, 105, 420 |
| BstDEI | CTNAG | 5 cut(s) | 437, 652, 1398, 1467, 1578 |
| BstDSI | CCRYGG | 3 cut(s) | 1137, 1230, 1489 |
| BstEII | GGTNACC | 1 cut(s) | 112 |
| BstF5I | GGATG | 2 cut(s) | 320, 787 |
| BstFNI | CGCG | 1 cut(s) | 1232 |
| BstHHI | GCGC | 1 cut(s) | 1731 |
| BstKTI | GATC | 7 cut(s) | 48, 246, 567, 714, 1537, 1573, 1762 |
| BstMAI | GTCTC | 5 cut(s) | 147, 151, 607, 916, 979 |
| BstMBI | GATC | 7 cut(s) | 45, 243, 564, 711, 1534, 1570, 1759 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 26, 104, 402, 1441 |
| BstNI | CCWGG | 5 cut(s) | 118, 633, 831, 1206, 1644 |
| BstNSI | RCATGY | 3 cut(s) | 107, 422, 485 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 640 |
| BstPI | GGTNACC | 1 cut(s) | 112 |
| BstSCI | CCNGG | 7 cut(s) | 116, 202, 631, 685, 829, 1204, 1642 |
| BstSLI | GKGCMC | 3 cut(s) | 350, 1602, 1680 |
| BstUI | CGCG | 1 cut(s) | 1232 |
| BstV1I | GCAGC | 7 cut(s) | 706, 908, 910, 1005, 1104, 1398, 1728 |
| BstV2I | GAAGAC | 3 cut(s) | 5, 620, 698 |
| BstX2I | RGATCY | 1 cut(s) | 1759 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1650 |
| BstYI | RGATCY | 1 cut(s) | 1759 |
| BsuRI | GGCC | 6 cut(s) | 208, 396, 904, 918, 1100, 1209 |
| BtgI | CCRYGG | 3 cut(s) | 1137, 1230, 1489 |
| BtsCI | GGATG | 2 cut(s) | 320, 787 |
| BtsI | GCAGTG | 5 cut(s) | 99, 350, 792, 1396, 1660 |
| Cac8I | GCNNGC | 3 cut(s) | 90, 105, 420 |
| CfoI | GCGC | 1 cut(s) | 1731 |
| Cfr13I | GGNCC | 8 cut(s) | 206, 326, 455, 593, 635, 858, 917, 1208 |
| Cfr42I | CCGCGG | 1 cut(s) | 1233 |
| Csp6I | GTAC | 4 cut(s) | 77, 1312, 1362, 1558 |
| CviAII | CATG | 8 cut(s) | 104, 260, 290, 419, 482, 892, 1182, 1490 |
| CviQI | GTAC | 4 cut(s) | 77, 1312, 1362, 1558 |
| DdeI | CTNAG | 5 cut(s) | 437, 652, 1398, 1467, 1578 |
| DpnI | GATC | 7 cut(s) | 47, 245, 566, 713, 1536, 1572, 1761 |
| DpnII | GATC | 7 cut(s) | 45, 243, 564, 711, 1534, 1570, 1759 |
| DraIII | CACNNNGTG | 1 cut(s) | 411 |
| DriI | GACNNNNNGTC | 2 cut(s) | 461, 599 |
| EaeI | YGGCCR | 2 cut(s) | 394, 1098 |
| Eam1104I | CTCTTC | 2 cut(s) | 167, 1029 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 461, 599 |
| EarI | CTCTTC | 2 cut(s) | 167, 1029 |
| Eco130I | CCWWGG | 3 cut(s) | 571, 1221, 1489 |
| Eco147I | AGGCCT | 1 cut(s) | 904 |
| Eco47I | GGWCC | 5 cut(s) | 326, 455, 593, 635, 858 |
| Eco57I | CTGAAG | 1 cut(s) | 727 |
| Eco91I | GGTNACC | 1 cut(s) | 112 |
| EcoO109I | RGGNCCY | 1 cut(s) | 206 |
| EcoO65I | GGTNACC | 1 cut(s) | 112 |
| EcoRII | CCWGG | 5 cut(s) | 116, 631, 829, 1204, 1642 |
| EcoT14I | CCWWGG | 3 cut(s) | 571, 1221, 1489 |
| ErhI | CCWWGG | 3 cut(s) | 571, 1221, 1489 |
| FaeI | CATG | 8 cut(s) | 107, 263, 293, 422, 485, 895, 1185, 1493 |
| FaqI | GGGAC | 5 cut(s) | 503, 856, 1112, 1185, 1408 |
| FatI | CATG | 8 cut(s) | 103, 259, 289, 418, 481, 891, 1181, 1489 |
| FbaI | TGATCA | 3 cut(s) | 243, 564, 711 |
| FblI | GTMKAC | 1 cut(s) | 952 |
| FokI | GGATG | 2 cut(s) | 327, 794 |
| FspBI | CTAG | 8 cut(s) | 9, 89, 210, 239, 900, 1425, 1452, 1670 |
| GlaI | GCGC | 1 cut(s) | 1730 |
| GsaI | CCCAGC | 3 cut(s) | 923, 1331, 1690 |
| HaeIII | GGCC | 6 cut(s) | 208, 396, 904, 918, 1100, 1209 |
| HapII | CCGG | 4 cut(s) | 83, 203, 686, 915 |
| HhaI | GCGC | 1 cut(s) | 1731 |
| Hin1II | CATG | 8 cut(s) | 107, 263, 293, 422, 485, 895, 1185, 1493 |
| Hin6I | GCGC | 1 cut(s) | 1729 |
| HinP1I | GCGC | 1 cut(s) | 1729 |
| HinfI | GANTC | 2 cut(s) | 213, 1494 |
| HpaII | CCGG | 4 cut(s) | 83, 203, 686, 915 |
| HphI | GGTGA | 6 cut(s) | 15, 242, 268, 376, 691, 1475 |
| Hpy166II | GTNNAC | 7 cut(s) | 77, 578, 953, 1141, 1312, 1314, 1678 |
| Hpy188I | TCNGA | 4 cut(s) | 357, 607, 1520, 1759 |
| Hpy188III | TCNNGA | 2 cut(s) | 591, 1129 |
| Hpy8I | GTNNAC | 7 cut(s) | 77, 578, 953, 1141, 1312, 1314, 1678 |
| HpyAV | CCTTC | 5 cut(s) | 221, 290, 339, 517, 1283 |
| HpyCH4III | ACNGT | 6 cut(s) | 187, 562, 769, 1138, 1162, 1591 |
| HpyCH4IV | ACGT | 1 cut(s) | 65 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 26, 104, 402, 1441 |
| HpyF3I | CTNAG | 5 cut(s) | 437, 652, 1398, 1467, 1578 |
| HpySE526I | ACGT | 1 cut(s) | 65 |
| Hsp92II | CATG | 8 cut(s) | 107, 263, 293, 422, 485, 895, 1185, 1493 |
| HspAI | GCGC | 1 cut(s) | 1729 |
| Ksp22I | TGATCA | 3 cut(s) | 243, 564, 711 |
| KspI | CCGCGG | 1 cut(s) | 1233 |
| Kzo9I | GATC | 7 cut(s) | 45, 243, 564, 711, 1534, 1570, 1759 |
| LguI | GCTCTTC | 1 cut(s) | 167 |
| LmnI | GCTCC | 2 cut(s) | 85, 1432 |
| Lsp1109I | GCAGC | 7 cut(s) | 706, 908, 910, 1005, 1104, 1398, 1728 |
| LweI | GCATC | 3 cut(s) | 29, 598, 772 |
| MaeI | CTAG | 8 cut(s) | 9, 89, 210, 239, 900, 1425, 1452, 1670 |
| MaeII | ACGT | 1 cut(s) | 65 |
| MaeIII | GTNAC | 5 cut(s) | 112, 151, 230, 274, 1711 |
| MalI | GATC | 7 cut(s) | 47, 245, 566, 713, 1536, 1572, 1761 |
| MboI | GATC | 7 cut(s) | 45, 243, 564, 711, 1534, 1570, 1759 |
| MflI | RGATCY | 1 cut(s) | 1759 |
| MhlI | GDGCHC | 3 cut(s) | 350, 1602, 1680 |
| MlsI | TGGCCA | 2 cut(s) | 396, 1100 |
| MluCI | AATT | 7 cut(s) | 294, 302, 351, 1109, 1346, 1498, 1528 |
| MluNI | TGGCCA | 2 cut(s) | 396, 1100 |
| Mox20I | TGGCCA | 2 cut(s) | 396, 1100 |
| MscI | TGGCCA | 2 cut(s) | 396, 1100 |
| MseI | TTAA | 6 cut(s) | 132, 305, 621, 804, 1340, 1774 |
| MslI | CAYNNNNRTG | 4 cut(s) | 288, 412, 1034, 1488 |
| Msp20I | TGGCCA | 2 cut(s) | 396, 1100 |
| MspA1I | CMGCKG | 3 cut(s) | 923, 1232, 1686 |
| MspI | CCGG | 4 cut(s) | 83, 203, 686, 915 |
| MspR9I | CCNGG | 7 cut(s) | 118, 204, 633, 687, 831, 1206, 1644 |
| MvaI | CCWGG | 5 cut(s) | 118, 633, 831, 1206, 1644 |
| MvnI | CGCG | 1 cut(s) | 1232 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 26, 104, 402, 1441 |
| NciI | CCSGG | 2 cut(s) | 204, 687 |
| NcoI | CCATGG | 1 cut(s) | 1489 |
| NdeII | GATC | 7 cut(s) | 45, 243, 564, 711, 1534, 1570, 1759 |
| NheI | GCTAGC | 1 cut(s) | 88 |
| NlaIII | CATG | 8 cut(s) | 107, 263, 293, 422, 485, 895, 1185, 1493 |
| NlaIV | GGNNCC | 1 cut(s) | 207 |
| NmuCI | GTSAC | 4 cut(s) | 151, 230, 274, 1711 |
| NspI | RCATGY | 3 cut(s) | 107, 422, 485 |
| OliI | CACNNNNGTG | 1 cut(s) | 1034 |
| PaeI | GCATGC | 2 cut(s) | 107, 422 |
| PceI | AGGCCT | 1 cut(s) | 904 |
| PciSI | GCTCTTC | 1 cut(s) | 167 |
| PfeI | GAWTC | 2 cut(s) | 213, 1494 |
| PfoI | TCCNGGA | 1 cut(s) | 631 |
| PshAI | GACNNNNGTC | 1 cut(s) | 640 |
| PshBI | ATTAAT | 2 cut(s) | 621, 1340 |
| PsiI | TTATAA | 1 cut(s) | 182 |
| Psp6I | CCWGG | 5 cut(s) | 116, 631, 829, 1204, 1642 |
| PspEI | GGTNACC | 1 cut(s) | 112 |
| PspFI | CCCAGC | 3 cut(s) | 919, 1327, 1686 |
| PspGI | CCWGG | 5 cut(s) | 116, 631, 829, 1204, 1642 |
| PspN4I | GGNNCC | 1 cut(s) | 207 |
| PspPI | GGNCC | 8 cut(s) | 206, 326, 455, 593, 635, 858, 917, 1208 |
| PsuI | RGATCY | 1 cut(s) | 1759 |
| PvuII | CAGCTG | 2 cut(s) | 923, 1686 |
| RsaI | GTAC | 4 cut(s) | 78, 1313, 1363, 1559 |
| RsaNI | GTAC | 4 cut(s) | 77, 1312, 1362, 1558 |
| RseI | CAYNNNNRTG | 4 cut(s) | 288, 412, 1034, 1488 |
| SacII | CCGCGG | 1 cut(s) | 1233 |
| SapI | GCTCTTC | 1 cut(s) | 167 |
| SaqAI | TTAA | 6 cut(s) | 132, 305, 621, 804, 1340, 1774 |
| Sau3AI | GATC | 7 cut(s) | 45, 243, 564, 711, 1534, 1570, 1759 |
| Sau96I | GGNCC | 8 cut(s) | 206, 326, 455, 593, 635, 858, 917, 1208 |
| ScrFI | CCNGG | 7 cut(s) | 118, 204, 633, 687, 831, 1206, 1644 |
| SduI | GDGCHC | 3 cut(s) | 350, 1602, 1680 |
| SfaNI | GCATC | 3 cut(s) | 29, 598, 772 |
| Sfr303I | CCGCGG | 1 cut(s) | 1233 |
| SgrBI | CCGCGG | 1 cut(s) | 1233 |
| SinI | GGWCC | 5 cut(s) | 326, 455, 593, 635, 858 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 288, 412, 1034, 1488 |
| SmlI | CTYRAG | 2 cut(s) | 674, 976 |
| SmoI | CTYRAG | 2 cut(s) | 674, 976 |
| SphI | GCATGC | 2 cut(s) | 107, 422 |
| Sse9I | AATT | 7 cut(s) | 294, 302, 351, 1109, 1346, 1498, 1528 |
| SseBI | AGGCCT | 1 cut(s) | 904 |
| SsiI | CCGC | 5 cut(s) | 779, 1090, 1230, 1232, 1726 |
| SspMI | CTAG | 8 cut(s) | 9, 89, 210, 239, 900, 1425, 1452, 1670 |
| StuI | AGGCCT | 1 cut(s) | 904 |
| StyD4I | CCNGG | 7 cut(s) | 116, 202, 631, 685, 829, 1204, 1642 |
| StyI | CCWWGG | 3 cut(s) | 571, 1221, 1489 |
| TaaI | ACNGT | 6 cut(s) | 187, 562, 769, 1138, 1162, 1591 |
| TaiI | ACGT | 1 cut(s) | 68 |
| TaqI | TCGA | 3 cut(s) | 774, 957, 1533 |
| TasI | AATT | 7 cut(s) | 294, 302, 351, 1109, 1346, 1498, 1528 |
| TatI | WGTACW | 3 cut(s) | 76, 1311, 1557 |
| TauI | GCSGC | 3 cut(s) | 1232, 1235, 1729 |
| TfiI | GAWTC | 2 cut(s) | 213, 1494 |
| Tru1I | TTAA | 6 cut(s) | 132, 305, 621, 804, 1340, 1774 |
| Tru9I | TTAA | 6 cut(s) | 132, 305, 621, 804, 1340, 1774 |
| TseFI | GTSAC | 4 cut(s) | 151, 230, 274, 1711 |
| TseI | GCWGC | 7 cut(s) | 719, 896, 923, 1018, 1092, 1411, 1741 |
| Tsp45I | GTSAC | 4 cut(s) | 151, 230, 274, 1711 |
| TspDTI | ATGAA | 3 cut(s) | 321, 1085, 1170 |
| TspGWI | ACGGA | 1 cut(s) | 1734 |
| VneI | GTGCAC | 1 cut(s) | 1676 |
| VpaK11BI | GGWCC | 5 cut(s) | 326, 455, 593, 635, 858 |
| VspI | ATTAAT | 2 cut(s) | 621, 1340 |
| XapI | RAATTY | 3 cut(s) | 1109, 1346, 1528 |
| XceI | RCATGY | 3 cut(s) | 107, 422, 485 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 889 |
| XmiI | GTMKAC | 1 cut(s) | 952 |
| XspI | CTAG | 8 cut(s) | 9, 89, 210, 239, 900, 1425, 1452, 1670 |