Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1326 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 860 |
| AccI | GTMKAC | 3 cut(s) | 656, 727, 739 |
| AciI | CCGC | 2 cut(s) | 478, 1163 |
| AcsI | RAATTY | 2 cut(s) | 301, 369 |
| AcuI | CTGAAG | 1 cut(s) | 998 |
| AfaI | GTAC | 5 cut(s) | 223, 352, 530, 639, 1237 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 585, 860 |
| AgsI | TTSAA | 2 cut(s) | 276, 290 |
| AjnI | CCWGG | 1 cut(s) | 159 |
| AluBI | AGCT | 7 cut(s) | 71, 260, 815, 889, 1370, 1430, 1442 |
| AluI | AGCT | 7 cut(s) | 71, 260, 815, 889, 1370, 1430, 1442 |
| Alw26I | GTCTC | 2 cut(s) | 20, 50 |
| ApeKI | GCWGC | 5 cut(s) | 886, 1367, 1387, 1430, 1439 |
| ApoI | RAATTY | 2 cut(s) | 301, 369 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 436, 530 |
| AsuC2I | CCSGG | 1 cut(s) | 536 |
| AsuHPI | GGTGA | 3 cut(s) | 493, 772, 1178 |
| AsuII | TTCGAA | 1 cut(s) | 430 |
| BbsI | GAAGAC | 1 cut(s) | 386 |
| BbvI | GCAGC | 5 cut(s) | 898, 1379, 1399, 1417, 1451 |
| BccI | CCATC | 3 cut(s) | 407, 757, 862 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 865, 899 |
| BciT130I | CCWGG | 1 cut(s) | 161 |
| BcnI | CCSGG | 1 cut(s) | 536 |
| BcoDI | GTCTC | 2 cut(s) | 20, 50 |
| BfaI | CTAG | 4 cut(s) | 153, 333, 1364, 1427 |
| BfmI | CTRYAG | 2 cut(s) | 1009, 1431 |
| BfuAI | ACCTGC | 1 cut(s) | 1326 |
| BisI | GCNGC | 5 cut(s) | 887, 1368, 1388, 1431, 1440 |
| BlsI | GCNGC | 5 cut(s) | 888, 1369, 1389, 1432, 1441 |
| BmcAI | AGTACT | 2 cut(s) | 352, 530 |
| Bme1390I | CCNGG | 2 cut(s) | 161, 536 |
| BmiI | GGNNCC | 1 cut(s) | 1145 |
| BmrFI | CCNGG | 2 cut(s) | 161, 536 |
| BmsI | GCATC | 4 cut(s) | 126, 263, 544, 1310 |
| BpiI | GAAGAC | 1 cut(s) | 386 |
| BpmI | CTGGAG | 2 cut(s) | 543, 850 |
| Bpu10I | CCTNAGC | 1 cut(s) | 816 |
| Bpu14I | TTCGAA | 1 cut(s) | 430 |
| BpuEI | CTTGAG | 1 cut(s) | 951 |
| BpuMI | CCSGG | 1 cut(s) | 536 |
| BsaI | GGTCTC | 1 cut(s) | 50 |
| BsaJI | CCNNGG | 1 cut(s) | 160 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 409, 439, 823, 853 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 585, 860 |
| Bse1I | ACTGG | 4 cut(s) | 128, 507, 560, 1042 |
| Bse3DI | GCAATG | 1 cut(s) | 462 |
| BseBI | CCWGG | 1 cut(s) | 161 |
| BseDI | CCNNGG | 1 cut(s) | 160 |
| BseGI | GGATG | 4 cut(s) | 52, 544, 559, 1053 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 585, 860 |
| BseMI | GCAATG | 1 cut(s) | 462 |
| BseMII | CTCAG | 2 cut(s) | 206, 1031 |
| BseNI | ACTGG | 4 cut(s) | 128, 507, 560, 1042 |
| BseRI | GAGGAG | 3 cut(s) | 158, 722, 725 |
| BseXI | GCAGC | 5 cut(s) | 898, 1379, 1399, 1417, 1451 |
| BseYI | CCCAGC | 1 cut(s) | 1264 |
| BsgI | GTGCAG | 1 cut(s) | 905 |
| BsiSI | CCGG | 1 cut(s) | 536 |
| BslFI | GGGAC | 2 cut(s) | 1103, 1261 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 585, 860 |
| BsmAI | GTCTC | 2 cut(s) | 20, 50 |
| BsmFI | GGGAC | 2 cut(s) | 1103, 1261 |
| Bso31I | GGTCTC | 1 cut(s) | 50 |
| Bsp119I | TTCGAA | 1 cut(s) | 430 |
| Bsp143I | GATC | 2 cut(s) | 648, 1077 |
| BspACI | CCGC | 2 cut(s) | 478, 1163 |
| BspCNI | CTCAG | 2 cut(s) | 207, 1030 |
| BspHI | TCATGA | 1 cut(s) | 565 |
| BspLI | GGNNCC | 1 cut(s) | 1145 |
| BspMAI | CTGCAG | 1 cut(s) | 1435 |
| BspMI | ACCTGC | 1 cut(s) | 1326 |
| BspT104I | TTCGAA | 1 cut(s) | 430 |
| BspTNI | GGTCTC | 1 cut(s) | 50 |
| BsrDI | GCAATG | 1 cut(s) | 462 |
| BsrI | ACTGG | 4 cut(s) | 128, 507, 560, 1042 |
| BssECI | CCNNGG | 1 cut(s) | 160 |
| BssMI | GATC | 2 cut(s) | 648, 1077 |
| BssNAI | GTATAC | 2 cut(s) | 657, 728 |
| Bst1107I | GTATAC | 2 cut(s) | 657, 728 |
| Bst2UI | CCWGG | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 6 cut(s) | 81, 732, 1013, 1028, 1243, 1351 |
| Bst6I | CTCTTC | 2 cut(s) | 92, 874 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1373 |
| BstBI | TTCGAA | 1 cut(s) | 430 |
| BstC8I | GCNNGC | 1 cut(s) | 390 |
| BstDEI | CTNAG | 5 cut(s) | 215, 678, 816, 995, 1017 |
| BstF5I | GGATG | 4 cut(s) | 52, 544, 559, 1053 |
| BstKTI | GATC | 2 cut(s) | 651, 1080 |
| BstMAI | GTCTC | 2 cut(s) | 20, 50 |
| BstMBI | GATC | 2 cut(s) | 648, 1077 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 461, 1341, 1373, 1436, 1439 |
| BstNI | CCWGG | 1 cut(s) | 161 |
| BstNSI | RCATGY | 2 cut(s) | 17, 33 |
| BstSCI | CCNGG | 2 cut(s) | 159, 534 |
| BstSFI | CTRYAG | 2 cut(s) | 1009, 1431 |
| BstV1I | GCAGC | 5 cut(s) | 898, 1379, 1399, 1417, 1451 |
| BstV2I | GAAGAC | 1 cut(s) | 386 |
| BstZ17I | GTATAC | 2 cut(s) | 657, 728 |
| BtsCI | GGATG | 4 cut(s) | 52, 544, 559, 1053 |
| BtsIMutI | CAGTG | 5 cut(s) | 500, 1049, 1117, 1248, 1347 |
| BveI | ACCTGC | 1 cut(s) | 1326 |
| Cac8I | GCNNGC | 1 cut(s) | 390 |
| CciI | TCATGA | 1 cut(s) | 565 |
| Csp6I | GTAC | 5 cut(s) | 222, 351, 529, 638, 1236 |
| CviAII | CATG | 8 cut(s) | 14, 30, 566, 585, 824, 1199, 1219, 1328 |
| CviQI | GTAC | 5 cut(s) | 222, 351, 529, 638, 1236 |
| DdeI | CTNAG | 5 cut(s) | 215, 678, 816, 995, 1017 |
| DpnI | GATC | 2 cut(s) | 650, 1079 |
| DpnII | GATC | 2 cut(s) | 648, 1077 |
| Eam1104I | CTCTTC | 2 cut(s) | 92, 874 |
| EarI | CTCTTC | 2 cut(s) | 92, 874 |
| Eco31I | GGTCTC | 1 cut(s) | 50 |
| Eco32I | GATATC | 1 cut(s) | 847 |
| Eco57I | CTGAAG | 1 cut(s) | 998 |
| EcoRII | CCWGG | 1 cut(s) | 159 |
| EcoRV | GATATC | 1 cut(s) | 847 |
| FaeI | CATG | 8 cut(s) | 17, 33, 569, 588, 827, 1202, 1222, 1331 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 222, 254 |
| FaqI | GGGAC | 2 cut(s) | 1103, 1261 |
| FatI | CATG | 8 cut(s) | 13, 29, 565, 584, 823, 1198, 1218, 1327 |
| FauI | CCCGC | 2 cut(s) | 471, 1156 |
| FblI | GTMKAC | 3 cut(s) | 656, 727, 739 |
| Fnu4HI | GCNGC | 5 cut(s) | 887, 1368, 1388, 1431, 1440 |
| FokI | GGATG | 4 cut(s) | 59, 551, 566, 1060 |
| Fsp4HI | GCNGC | 5 cut(s) | 887, 1368, 1388, 1431, 1440 |
| FspBI | CTAG | 4 cut(s) | 153, 333, 1364, 1427 |
| GluI | GCNGC | 5 cut(s) | 887, 1368, 1388, 1431, 1440 |
| GsaI | CCCAGC | 1 cut(s) | 1268 |
| GsuI | CTGGAG | 2 cut(s) | 543, 850 |
| HapII | CCGG | 1 cut(s) | 536 |
| Hin1II | CATG | 8 cut(s) | 17, 33, 569, 588, 827, 1202, 1222, 1331 |
| HincII | GTYRAC | 2 cut(s) | 740, 933 |
| HindII | GTYRAC | 2 cut(s) | 740, 933 |
| HinfI | GANTC | 6 cut(s) | 569, 872, 893, 929, 1189, 1209 |
| HpaII | CCGG | 1 cut(s) | 536 |
| HphI | GGTGA | 3 cut(s) | 493, 772, 1178 |
| Hpy166II | GTNNAC | 4 cut(s) | 657, 728, 740, 933 |
| Hpy188I | TCNGA | 3 cut(s) | 706, 978, 1082 |
| Hpy188III | TCNNGA | 7 cut(s) | 75, 356, 566, 778, 829, 876, 968 |
| Hpy8I | GTNNAC | 4 cut(s) | 657, 728, 740, 933 |
| Hpy99I | CGWCG | 1 cut(s) | 744 |
| HpyAV | CCTTC | 7 cut(s) | 504, 585, 585, 787, 1114, 1263, 1320 |
| HpyCH4III | ACNGT | 6 cut(s) | 81, 732, 1013, 1028, 1243, 1351 |
| HpyCH4V | TGCA | 9 cut(s) | 11, 139, 169, 800, 886, 1096, 1387, 1433, 1452 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 461, 1341, 1373, 1436, 1439 |
| HpyF3I | CTNAG | 5 cut(s) | 215, 678, 816, 995, 1017 |
| Hsp92II | CATG | 8 cut(s) | 17, 33, 569, 588, 827, 1202, 1222, 1331 |
| Kzo9I | GATC | 2 cut(s) | 648, 1077 |
| LmnI | GCTCC | 1 cut(s) | 562 |
| Lsp1109I | GCAGC | 5 cut(s) | 898, 1379, 1399, 1417, 1451 |
| LweI | GCATC | 4 cut(s) | 126, 263, 544, 1310 |
| MaeI | CTAG | 4 cut(s) | 153, 333, 1364, 1427 |
| MaeIII | GTNAC | 3 cut(s) | 155, 628, 1071 |
| MalI | GATC | 2 cut(s) | 650, 1079 |
| MboI | GATC | 2 cut(s) | 648, 1077 |
| MluCI | AATT | 7 cut(s) | 38, 88, 301, 369, 442, 717, 801 |
| MlyI | GAGTC | 4 cut(s) | 881, 887, 938, 1183 |
| MmeI | TCCRAC | 2 cut(s) | 849, 1002 |
| MroXI | GAANNNNTTC | 2 cut(s) | 436, 530 |
| MseI | TTAA | 3 cut(s) | 87, 447, 734 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1197 |
| MspA1I | CMGCKG | 2 cut(s) | 889, 1442 |
| MspI | CCGG | 1 cut(s) | 536 |
| MspR9I | CCNGG | 2 cut(s) | 161, 536 |
| MvaI | CCWGG | 1 cut(s) | 161 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 461, 1341, 1373, 1436, 1439 |
| NciI | CCSGG | 1 cut(s) | 536 |
| NdeII | GATC | 2 cut(s) | 648, 1077 |
| NlaIII | CATG | 8 cut(s) | 17, 33, 569, 588, 827, 1202, 1222, 1331 |
| NlaIV | GGNNCC | 1 cut(s) | 1145 |
| NmuCI | GTSAC | 2 cut(s) | 628, 1071 |
| NspI | RCATGY | 2 cut(s) | 17, 33 |
| NspV | TTCGAA | 1 cut(s) | 430 |
| PagI | TCATGA | 1 cut(s) | 565 |
| PdmI | GAANNNNTTC | 2 cut(s) | 436, 530 |
| PfeI | GAWTC | 2 cut(s) | 569, 1209 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 860 |
| PfoI | TCCNGGA | 1 cut(s) | 534 |
| PkrI | GCNGC | 5 cut(s) | 888, 1369, 1389, 1432, 1441 |
| PleI | GAGTC | 4 cut(s) | 880, 887, 937, 1183 |
| PpsI | GAGTC | 4 cut(s) | 880, 887, 937, 1183 |
| Psp6I | CCWGG | 1 cut(s) | 159 |
| PspFI | CCCAGC | 1 cut(s) | 1264 |
| PspGI | CCWGG | 1 cut(s) | 159 |
| PspN4I | GGNNCC | 1 cut(s) | 1145 |
| PstI | CTGCAG | 1 cut(s) | 1435 |
| PvuII | CAGCTG | 2 cut(s) | 889, 1442 |
| RsaI | GTAC | 5 cut(s) | 223, 352, 530, 639, 1237 |
| RsaNI | GTAC | 5 cut(s) | 222, 351, 529, 638, 1236 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1197 |
| SalI | GTCGAC | 1 cut(s) | 738 |
| SaqAI | TTAA | 3 cut(s) | 87, 447, 734 |
| SatI | GCNGC | 5 cut(s) | 887, 1368, 1388, 1431, 1440 |
| Sau3AI | GATC | 2 cut(s) | 648, 1077 |
| ScaI | AGTACT | 2 cut(s) | 352, 530 |
| SchI | GAGTC | 4 cut(s) | 881, 887, 938, 1183 |
| ScrFI | CCNGG | 2 cut(s) | 161, 536 |
| SfaNI | GCATC | 4 cut(s) | 126, 263, 544, 1310 |
| SfcI | CTRYAG | 2 cut(s) | 1009, 1431 |
| SfuI | TTCGAA | 1 cut(s) | 430 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1197 |
| SmlI | CTYRAG | 1 cut(s) | 966 |
| SmoI | CTYRAG | 1 cut(s) | 966 |
| Sse9I | AATT | 7 cut(s) | 38, 88, 301, 369, 442, 717, 801 |
| SsiI | CCGC | 2 cut(s) | 478, 1163 |
| SspMI | CTAG | 4 cut(s) | 153, 333, 1364, 1427 |
| StyD4I | CCNGG | 2 cut(s) | 159, 534 |
| TaaI | ACNGT | 6 cut(s) | 81, 732, 1013, 1028, 1243, 1351 |
| TaqI | TCGA | 4 cut(s) | 430, 739, 875, 1207 |
| TaqII | GACCGA | 1 cut(s) | 1149 |
| TasI | AATT | 7 cut(s) | 38, 88, 301, 369, 442, 717, 801 |
| TatI | WGTACW | 3 cut(s) | 350, 528, 1235 |
| TfiI | GAWTC | 2 cut(s) | 569, 1209 |
| Tru1I | TTAA | 3 cut(s) | 87, 447, 734 |
| Tru9I | TTAA | 3 cut(s) | 87, 447, 734 |
| TscAI | CASTG | 5 cut(s) | 507, 1049, 1117, 1248, 1354 |
| TseFI | GTSAC | 2 cut(s) | 628, 1071 |
| TseI | GCWGC | 5 cut(s) | 886, 1367, 1387, 1430, 1439 |
| Tsp45I | GTSAC | 2 cut(s) | 628, 1071 |
| TspDTI | ATGAA | 7 cut(s) | 51, 324, 465, 554, 812, 1235, 1293 |
| TspGWI | ACGGA | 3 cut(s) | 619, 623, 1404 |
| TspRI | CASTG | 5 cut(s) | 507, 1049, 1117, 1248, 1354 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 860 |
| XapI | RAATTY | 2 cut(s) | 301, 369 |
| XceI | RCATGY | 2 cut(s) | 17, 33 |
| XmiI | GTMKAC | 3 cut(s) | 656, 727, 739 |
| XmnI | GAANNNNTTC | 2 cut(s) | 436, 530 |
| XspI | CTAG | 4 cut(s) | 153, 333, 1364, 1427 |
| ZrmI | AGTACT | 2 cut(s) | 352, 530 |