ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 133 - 296 | 3.2e-06 | Endonuclease/Exonuclease/phosphatase family |
| RVT_1 | PF00078 | 544 - 795 | 4e-30 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| zf-RVT | PF13966 | 1090 - 1160 | 7.9e-14 | zinc-binding in reverse transcriptase |
| RVT_3 | PF13456 | 1216 - 1334 | 9.8e-28 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 41 |
| AarI | CACCTGC | 1 cut(s) | 696 |
| AatII | GACGTC | 2 cut(s) | 3527, 3585 |
| Acc36I | ACCTGC | 3 cut(s) | 696, 2504, 3696 |
| Acc65I | GGTACC | 1 cut(s) | 3355 |
| AccB1I | GGYRCC | 2 cut(s) | 139, 3355 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 828, 3988 |
| AccBSI | CCGCTC | 2 cut(s) | 410, 3700 |
| AccI | GTMKAC | 2 cut(s) | 170, 2870 |
| AccIII | TCCGGA | 1 cut(s) | 3052 |
| AclI | AACGTT | 1 cut(s) | 1525 |
| AclWI | GGATC | 5 cut(s) | 2907, 2957, 3044, 3723, 4029 |
| AcsI | RAATTY | 4 cut(s) | 1056, 2624, 2769, 4135 |
| AcuI | CTGAAG | 3 cut(s) | 2270, 2439, 3123 |
| AcyI | GRCGYC | 2 cut(s) | 3524, 3582 |
| AdeI | CACNNNGTG | 2 cut(s) | 828, 1540 |
| AfaI | GTAC | 7 cut(s) | 642, 1244, 1291, 1997, 2691, 3321, 3357 |
| AflIII | ACRYGT | 1 cut(s) | 3442 |
| AgeI | ACCGGT | 1 cut(s) | 807 |
| AhlI | ACTAGT | 2 cut(s) | 1934, 3340 |
| AjnI | CCWGG | 8 cut(s) | 103, 569, 900, 1085, 1305, 1489, 1777, 3804 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 425, 457, 2819, 2851 |
| AleI | CACNNNNGTG | 1 cut(s) | 3393 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 725, 757, 3081, 3113 |
| Alw21I | GWGCWC | 4 cut(s) | 379, 1653, 3233, 3435 |
| Alw26I | GTCTC | 8 cut(s) | 1243, 1263, 1730, 1831, 2055, 2414, 3050, 3331 |
| AlwI | GGATC | 5 cut(s) | 2907, 2957, 3044, 3723, 4029 |
| Ama87I | CYCGRG | 5 cut(s) | 852, 1260, 2022, 2857, 4098 |
| Aor13HI | TCCGGA | 1 cut(s) | 3052 |
| ApeKI | GCWGC | 3 cut(s) | 989, 1559, 3299 |
| ApoI | RAATTY | 4 cut(s) | 1056, 2624, 2769, 4135 |
| AseI | ATTAAT | 2 cut(s) | 1625, 2949 |
| AsiGI | ACCGGT | 1 cut(s) | 807 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 95, 2445 |
| Asp718I | GGTACC | 1 cut(s) | 3355 |
| AspA2I | CCTAGG | 1 cut(s) | 683 |
| AsuC2I | CCSGG | 2 cut(s) | 2858, 2859 |
| AsuII | TTCGAA | 2 cut(s) | 910, 2324 |
| AsuNHI | GCTAGC | 1 cut(s) | 4001 |
| AvaI | CYCGRG | 5 cut(s) | 852, 1260, 2022, 2857, 4098 |
| AvaII | GGWCC | 6 cut(s) | 214, 668, 749, 883, 2802, 3723 |
| AvrII | CCTAGG | 1 cut(s) | 683 |
| AxyI | CCTNAGG | 1 cut(s) | 3315 |
| BaeGI | GKGCMC | 1 cut(s) | 142 |
| BanI | GGYRCC | 2 cut(s) | 139, 3355 |
| BanII | GRGCYC | 2 cut(s) | 1855, 4172 |
| BbsI | GAAGAC | 4 cut(s) | 2471, 3243, 3577, 4077 |
| Bbv12I | GWGCWC | 4 cut(s) | 379, 1653, 3233, 3435 |
| BbvI | GCAGC | 3 cut(s) | 976, 1571, 3286 |
| BceAI | ACGGC | 1 cut(s) | 135 |
| BciT130I | CCWGG | 8 cut(s) | 105, 571, 902, 1087, 1307, 1491, 1779, 3806 |
| BciVI | GTATCC | 2 cut(s) | 1953, 2964 |
| BclI | TGATCA | 3 cut(s) | 2137, 2529, 3397 |
| BcnI | CCSGG | 2 cut(s) | 2858, 2859 |
| BcoDI | GTCTC | 8 cut(s) | 1243, 1263, 1730, 1831, 2055, 2414, 3050, 3331 |
| BcuI | ACTAGT | 2 cut(s) | 1934, 3340 |
| BfmI | CTRYAG | 2 cut(s) | 1557, 3775 |
| BfuAI | ACCTGC | 3 cut(s) | 696, 2504, 3696 |
| BfuI | GTATCC | 2 cut(s) | 1953, 2964 |
| BisI | GCNGC | 4 cut(s) | 990, 1560, 3300, 4130 |
| BlnI | CCTAGG | 1 cut(s) | 683 |
| BlpI | GCTNAGC | 1 cut(s) | 3748 |
| BlsI | GCNGC | 4 cut(s) | 991, 1561, 3301, 4131 |
| BmcAI | AGTACT | 2 cut(s) | 642, 1244 |
| Bme18I | GGWCC | 6 cut(s) | 214, 668, 749, 883, 2802, 3723 |
| BmeT110I | CYCGRG | 5 cut(s) | 852, 1260, 2022, 2857, 4098 |
| BmrI | ACTGGG | 2 cut(s) | 1709, 3503 |
| BmsI | GCATC | 5 cut(s) | 668, 857, 2266, 2288, 4116 |
| BmtI | GCTAGC | 1 cut(s) | 4005 |
| BmuI | ACTGGG | 2 cut(s) | 1709, 3503 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1255, 1280 |
| BpiI | GAAGAC | 4 cut(s) | 2471, 3243, 3577, 4077 |
| BpmI | CTGGAG | 7 cut(s) | 126, 363, 923, 1108, 1267, 1473, 1667 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1854 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3748 |
| Bpu14I | TTCGAA | 2 cut(s) | 910, 2324 |
| BpuEI | CTTGAG | 4 cut(s) | 1712, 2827, 3160, 3228 |
| BpuMI | CCSGG | 2 cut(s) | 2858, 2859 |
| BsaAI | YACGTR | 1 cut(s) | 3323 |
| BsaHI | GRCGYC | 2 cut(s) | 3524, 3582 |
| BsaI | GGTCTC | 2 cut(s) | 1263, 2414 |
| BsaWI | WCCGGW | 3 cut(s) | 807, 1180, 3052 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2222, 2252 |
| Bse118I | RCCGGY | 1 cut(s) | 807 |
| Bse1I | ACTGG | 9 cut(s) | 280, 1039, 1250, 1350, 1650, 1704, 3071, 3083, 3498 |
| Bse21I | CCTNAGG | 1 cut(s) | 3315 |
| Bse3DI | GCAATG | 2 cut(s) | 1749, 3466 |
| BseAI | TCCGGA | 1 cut(s) | 3052 |
| BseBI | CCWGG | 8 cut(s) | 105, 571, 902, 1087, 1307, 1491, 1779, 3806 |
| BseGI | GGATG | 8 cut(s) | 1123, 2118, 2206, 2768, 3075, 3643, 4063, 4170 |
| BseMI | GCAATG | 2 cut(s) | 1749, 3466 |
| BseMII | CTCAG | 7 cut(s) | 26, 469, 1406, 1868, 2655, 3762, 3876 |
| BseNI | ACTGG | 9 cut(s) | 280, 1039, 1250, 1350, 1650, 1704, 3071, 3083, 3498 |
| BseSI | GKGCMC | 1 cut(s) | 142 |
| BseXI | GCAGC | 3 cut(s) | 976, 1571, 3286 |
| BseYI | CCCAGC | 3 cut(s) | 125, 1008, 4174 |
| BshNI | GGYRCC | 2 cut(s) | 139, 3355 |
| BshTI | ACCGGT | 1 cut(s) | 807 |
| BsiHKAI | GWGCWC | 4 cut(s) | 379, 1653, 3233, 3435 |
| BsiHKCI | CYCGRG | 5 cut(s) | 852, 1260, 2022, 2857, 4098 |
| BsiSI | CCGG | 5 cut(s) | 808, 845, 1181, 2858, 3053 |
| BslFI | GGGAC | 4 cut(s) | 654, 3077, 3709, 4102 |
| BsmAI | GTCTC | 8 cut(s) | 1243, 1263, 1730, 1831, 2055, 2414, 3050, 3331 |
| BsmBI | CGTCTC | 3 cut(s) | 1730, 1831, 3050 |
| BsmFI | GGGAC | 4 cut(s) | 654, 3077, 3709, 4102 |
| BsmI | GAATGC | 3 cut(s) | 1200, 1420, 3461 |
| Bso31I | GGTCTC | 2 cut(s) | 1263, 2414 |
| BsoBI | CYCGRG | 5 cut(s) | 852, 1260, 2022, 2857, 4098 |
| Bsp119I | TTCGAA | 2 cut(s) | 910, 2324 |
| Bsp1286I | GDGCHC | 7 cut(s) | 142, 379, 1653, 1855, 3233, 3435, 4172 |
| Bsp13I | TCCGGA | 1 cut(s) | 3052 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3748 |
| BspCNI | CTCAG | 7 cut(s) | 25, 468, 1405, 1867, 2654, 3761, 3877 |
| BspEI | TCCGGA | 1 cut(s) | 3052 |
| BspHI | TCATGA | 1 cut(s) | 2217 |
| BspMAI | CTGCAG | 2 cut(s) | 1561, 3779 |
| BspMI | ACCTGC | 3 cut(s) | 696, 2504, 3696 |
| BspOI | GCTAGC | 1 cut(s) | 4005 |
| BspPI | GGATC | 5 cut(s) | 2907, 2957, 3044, 3723, 4029 |
| BspQI | GCTCTTC | 2 cut(s) | 2124, 2346 |
| BspT104I | TTCGAA | 2 cut(s) | 910, 2324 |
| BspT107I | GGYRCC | 2 cut(s) | 139, 3355 |
| BspTNI | GGTCTC | 2 cut(s) | 1263, 2414 |
| BsrBI | CCGCTC | 2 cut(s) | 410, 3700 |
| BsrDI | GCAATG | 2 cut(s) | 1749, 3466 |
| BsrFI | RCCGGY | 1 cut(s) | 807 |
| BsrI | ACTGG | 9 cut(s) | 280, 1039, 1250, 1350, 1650, 1704, 3071, 3083, 3498 |
| BssAI | RCCGGY | 1 cut(s) | 807 |
| BssNAI | GTATAC | 1 cut(s) | 2871 |
| BssNI | GRCGYC | 2 cut(s) | 3524, 3582 |
| BssT1I | CCWWGG | 6 cut(s) | 611, 683, 1293, 1707, 2404, 2966 |
| Bst1107I | GTATAC | 1 cut(s) | 2871 |
| Bst2UI | CCWGG | 8 cut(s) | 105, 571, 902, 1087, 1307, 1491, 1779, 3806 |
| Bst4CI | ACNGT | 8 cut(s) | 325, 722, 741, 1502, 1990, 2015, 2612, 3437 |
| Bst6I | CTCTTC | 5 cut(s) | 2124, 2300, 2346, 2796, 3194 |
| BstACI | GRCGYC | 2 cut(s) | 3524, 3582 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3998 |
| BstBAI | YACGTR | 1 cut(s) | 3323 |
| BstBI | TTCGAA | 2 cut(s) | 910, 2324 |
| BstDSI | CCRYGG | 1 cut(s) | 151 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 108, 3851 |
| BstF5I | GGATG | 8 cut(s) | 1123, 2118, 2206, 2768, 3075, 3643, 4063, 4170 |
| BstMAI | GTCTC | 8 cut(s) | 1243, 1263, 1730, 1831, 2055, 2414, 3050, 3331 |
| BstNI | CCWGG | 8 cut(s) | 105, 571, 902, 1087, 1307, 1491, 1779, 3806 |
| BstNSI | RCATGY | 4 cut(s) | 2846, 3446, 3474, 4097 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1255, 1280 |
| BstSFI | CTRYAG | 2 cut(s) | 1557, 3775 |
| BstSLI | GKGCMC | 1 cut(s) | 142 |
| BstSNI | TACGTA | 1 cut(s) | 3323 |
| BstV1I | GCAGC | 3 cut(s) | 976, 1571, 3286 |
| BstV2I | GAAGAC | 4 cut(s) | 2471, 3243, 3577, 4077 |
| BstX2I | RGATCY | 2 cut(s) | 2899, 4021 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1714 |
| BstYI | RGATCY | 2 cut(s) | 2899, 4021 |
| BstZ17I | GTATAC | 1 cut(s) | 2871 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3315 |
| BsuI | GTATCC | 2 cut(s) | 1953, 2964 |
| BtgI | CCRYGG | 1 cut(s) | 151 |
| BtgZI | GCGATG | 1 cut(s) | 1424 |
| BtsCI | GGATG | 8 cut(s) | 1123, 2118, 2206, 2768, 3075, 3643, 4063, 4170 |
| BtsI | GCAGTG | 1 cut(s) | 1455 |
| BtsIMutI | CAGTG | 2 cut(s) | 1455, 3491 |
| BveI | ACCTGC | 3 cut(s) | 696, 2504, 3696 |
| CciI | TCATGA | 1 cut(s) | 2217 |
| Cfr10I | RCCGGY | 1 cut(s) | 807 |
| Cfr9I | CCCGGG | 1 cut(s) | 2857 |
| CseI | GACGC | 1 cut(s) | 2151 |
| Csp6I | GTAC | 7 cut(s) | 641, 1243, 1290, 1996, 2690, 3320, 3356 |
| CspAI | ACCGGT | 1 cut(s) | 807 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 3480, 3515, 3832, 3867, 3957, 3992 |
| CviQI | GTAC | 7 cut(s) | 641, 1243, 1290, 1996, 2690, 3320, 3356 |
| DraI | TTTAAA | 2 cut(s) | 867, 4140 |
| DraIII | CACNNNGTG | 2 cut(s) | 828, 1540 |
| Eam1104I | CTCTTC | 5 cut(s) | 2124, 2300, 2346, 2796, 3194 |
| EarI | CTCTTC | 5 cut(s) | 2124, 2300, 2346, 2796, 3194 |
| EciI | GGCGGA | 1 cut(s) | 1655 |
| Eco105I | TACGTA | 1 cut(s) | 3323 |
| Eco130I | CCWWGG | 6 cut(s) | 611, 683, 1293, 1707, 2404, 2966 |
| Eco147I | AGGCCT | 2 cut(s) | 610, 3773 |
| Eco24I | GRGCYC | 2 cut(s) | 1855, 4172 |
| Eco31I | GGTCTC | 2 cut(s) | 1263, 2414 |
| Eco32I | GATATC | 2 cut(s) | 1747, 1821 |
| Eco47I | GGWCC | 6 cut(s) | 214, 668, 749, 883, 2802, 3723 |
| Eco57I | CTGAAG | 3 cut(s) | 2270, 2439, 3123 |
| Eco81I | CCTNAGG | 1 cut(s) | 3315 |
| Eco88I | CYCGRG | 5 cut(s) | 852, 1260, 2022, 2857, 4098 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 108, 3851 |
| EcoO109I | RGGNCCY | 3 cut(s) | 214, 668, 749 |
| EcoRII | CCWGG | 8 cut(s) | 103, 569, 900, 1085, 1305, 1489, 1777, 3804 |
| EcoRV | GATATC | 2 cut(s) | 1747, 1821 |
| EcoT14I | CCWWGG | 6 cut(s) | 611, 683, 1293, 1707, 2404, 2966 |
| EcoT22I | ATGCAT | 3 cut(s) | 2281, 3663, 4095 |
| EcoT38I | GRGCYC | 2 cut(s) | 1855, 4172 |
| ErhI | CCWWGG | 6 cut(s) | 611, 683, 1293, 1707, 2404, 2966 |
| Esp3I | CGTCTC | 3 cut(s) | 1730, 1831, 3050 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1721, 1753, 2340, 2372 |
| FaqI | GGGAC | 4 cut(s) | 654, 3077, 3709, 4102 |
| FauI | CCCGC | 3 cut(s) | 48, 403, 3693 |
| FauNDI | CATATG | 2 cut(s) | 3164, 3332 |
| FbaI | TGATCA | 3 cut(s) | 2137, 2529, 3397 |
| FblI | GTMKAC | 2 cut(s) | 170, 2870 |
| Fnu4HI | GCNGC | 4 cut(s) | 990, 1560, 3300, 4130 |
| FokI | GGATG | 8 cut(s) | 1130, 2125, 2213, 2775, 3082, 3650, 4070, 4177 |
| FriOI | GRGCYC | 2 cut(s) | 1855, 4172 |
| Fsp4HI | GCNGC | 4 cut(s) | 990, 1560, 3300, 4130 |
| GluI | GCNGC | 4 cut(s) | 990, 1560, 3300, 4130 |
| GsaI | CCCAGC | 3 cut(s) | 129, 1012, 4178 |
| GsuI | CTGGAG | 7 cut(s) | 126, 363, 923, 1108, 1267, 1473, 1667 |
| HapII | CCGG | 5 cut(s) | 808, 845, 1181, 2858, 3053 |
| HgaI | GACGC | 1 cut(s) | 2151 |
| Hin1I | GRCGYC | 2 cut(s) | 3524, 3582 |
| HincII | GTYRAC | 7 cut(s) | 1275, 1606, 2030, 2118, 2296, 2386, 2854 |
| HindII | GTYRAC | 7 cut(s) | 1275, 1606, 2030, 2118, 2296, 2386, 2854 |
| HindIII | AAGCTT | 2 cut(s) | 2442, 3927 |
| HpaI | GTTAAC | 1 cut(s) | 2296 |
| HpaII | CCGG | 5 cut(s) | 808, 845, 1181, 2858, 3053 |
| Hpy99I | CGWCG | 2 cut(s) | 513, 3526 |
| HpyCH4III | ACNGT | 8 cut(s) | 325, 722, 741, 1502, 1990, 2015, 2612, 3437 |
| Hsp92I | GRCGYC | 2 cut(s) | 3524, 3582 |
| Kpn2I | TCCGGA | 1 cut(s) | 3052 |
| KpnI | GGTACC | 1 cut(s) | 3359 |
| Ksp22I | TGATCA | 3 cut(s) | 2137, 2529, 3397 |
| KspAI | GTTAAC | 1 cut(s) | 2296 |
| LguI | GCTCTTC | 2 cut(s) | 2124, 2346 |
| LmnI | GCTCC | 6 cut(s) | 382, 1189, 1648, 2176, 3716, 4045 |
| Lsp1109I | GCAGC | 3 cut(s) | 976, 1571, 3286 |
| LweI | GCATC | 5 cut(s) | 668, 857, 2266, 2288, 4116 |
| MbiI | CCGCTC | 2 cut(s) | 410, 3700 |
| MfeI | CAATTG | 3 cut(s) | 601, 2141, 4075 |
| MflI | RGATCY | 2 cut(s) | 2899, 4021 |
| MhlI | GDGCHC | 7 cut(s) | 142, 379, 1653, 1855, 3233, 3435, 4172 |
| MlyI | GAGTC | 9 cut(s) | 176, 1272, 1292, 2057, 2160, 2633, 2858, 3153, 3393 |
| MmeI | TCCRAC | 5 cut(s) | 813, 861, 1212, 3000, 3334 |
| Mph1103I | ATGCAT | 3 cut(s) | 2281, 3663, 4095 |
| MroI | TCCGGA | 1 cut(s) | 3052 |
| MroXI | GAANNNNTTC | 2 cut(s) | 95, 2445 |
| MslI | CAYNNNNRTG | 8 cut(s) | 289, 480, 2216, 2847, 3264, 3393, 3405, 3426 |
| MspA1I | CMGCKG | 4 cut(s) | 125, 1255, 3152, 3668 |
| MspI | CCGG | 5 cut(s) | 808, 845, 1181, 2858, 3053 |
| MunI | CAATTG | 3 cut(s) | 601, 2141, 4075 |
| Mva1269I | GAATGC | 3 cut(s) | 1200, 1420, 3461 |
| MvaI | CCWGG | 8 cut(s) | 105, 571, 902, 1087, 1307, 1491, 1779, 3806 |
| NciI | CCSGG | 2 cut(s) | 2858, 2859 |
| NdeI | CATATG | 2 cut(s) | 3164, 3332 |
| NheI | GCTAGC | 1 cut(s) | 4001 |
| NmeAIII | GCCGAG | 2 cut(s) | 948, 3793 |
| NmuCI | GTSAC | 6 cut(s) | 1334, 1618, 1981, 1990, 2636, 2861 |
| NsiI | ATGCAT | 3 cut(s) | 2281, 3663, 4095 |
| NspI | RCATGY | 4 cut(s) | 2846, 3446, 3474, 4097 |
| NspV | TTCGAA | 2 cut(s) | 910, 2324 |
| OliI | CACNNNNGTG | 1 cut(s) | 3393 |
| PaeI | GCATGC | 2 cut(s) | 2846, 4097 |
| PaeR7I | CTCGAG | 1 cut(s) | 1260 |
| PagI | TCATGA | 1 cut(s) | 2217 |
| PaqCI | CACCTGC | 1 cut(s) | 696 |
| PceI | AGGCCT | 2 cut(s) | 610, 3773 |
| PciI | ACATGT | 1 cut(s) | 3442 |
| PciSI | GCTCTTC | 2 cut(s) | 2124, 2346 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4121 |
| PctI | GAATGC | 3 cut(s) | 1200, 1420, 3461 |
| PdmI | GAANNNNTTC | 2 cut(s) | 95, 2445 |
| PfeI | GAWTC | 9 cut(s) | 26, 59, 451, 1321, 1914, 2204, 2659, 2786, 3145 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 828, 3988 |
| PfoI | TCCNGGA | 1 cut(s) | 900 |
| PinAI | ACCGGT | 1 cut(s) | 807 |
| PkrI | GCNGC | 4 cut(s) | 991, 1561, 3301, 4131 |
| PleI | GAGTC | 9 cut(s) | 175, 1271, 1292, 2057, 2159, 2633, 2858, 3153, 3392 |
| PpsI | GAGTC | 9 cut(s) | 175, 1271, 1292, 2057, 2159, 2633, 2858, 3153, 3392 |
| Ppu21I | YACGTR | 1 cut(s) | 3323 |
| PpuMI | RGGWCCY | 3 cut(s) | 214, 668, 749 |
| PscI | ACATGT | 1 cut(s) | 3442 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1255, 1280 |
| PshBI | ATTAAT | 2 cut(s) | 1625, 2949 |
| PsiI | TTATAA | 1 cut(s) | 41 |
| Psp1406I | AACGTT | 1 cut(s) | 1525 |
| Psp5II | RGGWCCY | 3 cut(s) | 214, 668, 749 |
| Psp6I | CCWGG | 8 cut(s) | 103, 569, 900, 1085, 1305, 1489, 1777, 3804 |
| PspFI | CCCAGC | 3 cut(s) | 125, 1008, 4174 |
| PspGI | CCWGG | 8 cut(s) | 103, 569, 900, 1085, 1305, 1489, 1777, 3804 |
| PspPPI | RGGWCCY | 3 cut(s) | 214, 668, 749 |
| PstI | CTGCAG | 2 cut(s) | 1561, 3779 |
| PsuI | RGATCY | 2 cut(s) | 2899, 4021 |
| PvuII | CAGCTG | 3 cut(s) | 125, 3152, 3668 |
| RsaI | GTAC | 7 cut(s) | 642, 1244, 1291, 1997, 2691, 3321, 3357 |
| RsaNI | GTAC | 7 cut(s) | 641, 1243, 1290, 1996, 2690, 3320, 3356 |
| RseI | CAYNNNNRTG | 8 cut(s) | 289, 480, 2216, 2847, 3264, 3393, 3405, 3426 |
| SapI | GCTCTTC | 2 cut(s) | 2124, 2346 |
| SatI | GCNGC | 4 cut(s) | 990, 1560, 3300, 4130 |
| ScaI | AGTACT | 2 cut(s) | 642, 1244 |
| SchI | GAGTC | 9 cut(s) | 176, 1272, 1292, 2057, 2160, 2633, 2858, 3153, 3393 |
| SduI | GDGCHC | 7 cut(s) | 142, 379, 1653, 1855, 3233, 3435, 4172 |
| SfaNI | GCATC | 5 cut(s) | 668, 857, 2266, 2288, 4116 |
| SfcI | CTRYAG | 2 cut(s) | 1557, 3775 |
| Sfr274I | CTCGAG | 1 cut(s) | 1260 |
| SfuI | TTCGAA | 2 cut(s) | 910, 2324 |
| SinI | GGWCC | 6 cut(s) | 214, 668, 749, 883, 2802, 3723 |
| SlaI | CTCGAG | 1 cut(s) | 1260 |
| SmaI | CCCGGG | 1 cut(s) | 2859 |
| SmiI | ATTTAAAT | 1 cut(s) | 4140 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 289, 480, 2216, 2847, 3264, 3393, 3405, 3426 |
| SmlI | CTYRAG | 5 cut(s) | 1260, 1727, 2806, 3139, 3243 |
| SmoI | CTYRAG | 5 cut(s) | 1260, 1727, 2806, 3139, 3243 |
| SnaBI | TACGTA | 1 cut(s) | 3323 |
| SpeI | ACTAGT | 2 cut(s) | 1934, 3340 |
| SphI | GCATGC | 2 cut(s) | 2846, 4097 |
| SseBI | AGGCCT | 2 cut(s) | 610, 3773 |
| StuI | AGGCCT | 2 cut(s) | 610, 3773 |
| StyI | CCWWGG | 6 cut(s) | 611, 683, 1293, 1707, 2404, 2966 |
| SwaI | ATTTAAAT | 1 cut(s) | 4140 |
| TaaI | ACNGT | 8 cut(s) | 325, 722, 741, 1502, 1990, 2015, 2612, 3437 |
| TaqII | GACCGA | 2 cut(s) | 1033, 1292 |
| TatI | WGTACW | 2 cut(s) | 640, 1242 |
| TauI | GCSGC | 1 cut(s) | 4132 |
| TfiI | GAWTC | 9 cut(s) | 26, 59, 451, 1321, 1914, 2204, 2659, 2786, 3145 |
| TscAI | CASTG | 2 cut(s) | 1462, 3498 |
| TseFI | GTSAC | 6 cut(s) | 1334, 1618, 1981, 1990, 2636, 2861 |
| TseI | GCWGC | 3 cut(s) | 989, 1559, 3299 |
| Tsp45I | GTSAC | 6 cut(s) | 1334, 1618, 1981, 1990, 2636, 2861 |
| TspGWI | ACGGA | 6 cut(s) | 382, 1855, 2125, 2453, 2664, 2815 |
| TspMI | CCCGGG | 1 cut(s) | 2857 |
| TspRI | CASTG | 2 cut(s) | 1462, 3498 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 828, 3988 |
| VpaK11BI | GGWCC | 6 cut(s) | 214, 668, 749, 883, 2802, 3723 |
| VspI | ATTAAT | 2 cut(s) | 1625, 2949 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 108, 3851 |
| XapI | RAATTY | 4 cut(s) | 1056, 2624, 2769, 4135 |
| XbaI | TCTAGA | 2 cut(s) | 2042, 3901 |
| XceI | RCATGY | 4 cut(s) | 2846, 3446, 3474, 4097 |
| XhoI | CTCGAG | 1 cut(s) | 1260 |
| XmaI | CCCGGG | 1 cut(s) | 2857 |
| XmaJI | CCTAGG | 1 cut(s) | 683 |
| XmiI | GTMKAC | 2 cut(s) | 170, 2870 |
| XmnI | GAANNNNTTC | 2 cut(s) | 95, 2445 |
| ZraI | GACGTC | 2 cut(s) | 3525, 3583 |
| ZrmI | AGTACT | 2 cut(s) | 642, 1244 |
| Zsp2I | ATGCAT | 3 cut(s) | 2281, 3663, 4095 |