ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 699 - 821 | 2.7e-17 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 110 |
| AccIII | TCCGGA | 1 cut(s) | 1443 |
| AciI | CCGC | 5 cut(s) | 110, 310, 619, 899, 2425 |
| AclWI | GGATC | 3 cut(s) | 51, 281, 1543 |
| AcoI | YGGCCR | 2 cut(s) | 1150, 1740 |
| AcsI | RAATTY | 9 cut(s) | 251, 972, 1021, 1080, 1315, 1457, 1805, 1921, 2361 |
| AcuI | CTGAAG | 4 cut(s) | 539, 1605, 1614, 2244 |
| AdeI | CACNNNGTG | 1 cut(s) | 173 |
| AfeI | AGCGCT | 1 cut(s) | 2431 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 298, 427, 1622, 2078 |
| AflII | CTTAAG | 1 cut(s) | 932 |
| AgsI | TTSAA | 9 cut(s) | 257, 989, 1175, 1532, 1651, 1936, 2113, 2162, 2261 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1565 |
| AhlI | ACTAGT | 1 cut(s) | 1912 |
| AjnI | CCWGG | 5 cut(s) | 420, 588, 826, 1594, 1675 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2474, 2506 |
| Alw21I | GWGCWC | 2 cut(s) | 769, 1991 |
| Alw26I | GTCTC | 5 cut(s) | 701, 1573, 1677, 1972, 1994 |
| Alw44I | GTGCAC | 2 cut(s) | 765, 1987 |
| AlwI | GGATC | 3 cut(s) | 51, 281, 1543 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 833, 2003 |
| Aor13HI | TCCGGA | 1 cut(s) | 1443 |
| Aor51HI | AGCGCT | 1 cut(s) | 2431 |
| AoxI | GGCC | 6 cut(s) | 230, 1132, 1150, 1725, 1740, 2244 |
| ApaLI | GTGCAC | 2 cut(s) | 765, 1987 |
| ApeKI | GCWGC | 8 cut(s) | 271, 1207, 2028, 2427, 2441, 2456, 2519, 2528 |
| ApoI | RAATTY | 9 cut(s) | 251, 972, 1021, 1080, 1315, 1457, 1805, 1921, 2361 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 908 |
| AspLEI | GCGC | 1 cut(s) | 2432 |
| AspS9I | GGNCC | 4 cut(s) | 231, 418, 830, 1132 |
| AsuHPI | GGTGA | 8 cut(s) | 44, 542, 816, 913, 994, 1030, 1510, 2202 |
| AsuII | TTCGAA | 1 cut(s) | 1883 |
| AvaII | GGWCC | 2 cut(s) | 418, 830 |
| AxyI | CCTNAGG | 1 cut(s) | 1419 |
| BaeGI | GKGCMC | 2 cut(s) | 769, 1991 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1617, 1650 |
| BalI | TGGCCA | 1 cut(s) | 1742 |
| BauI | CACGAG | 1 cut(s) | 2151 |
| BbsI | GAAGAC | 1 cut(s) | 2194 |
| Bbv12I | GWGCWC | 2 cut(s) | 769, 1991 |
| BbvI | GCAGC | 8 cut(s) | 283, 1219, 2040, 2428, 2439, 2468, 2506, 2540 |
| BccI | CCATC | 8 cut(s) | 400, 731, 830, 1550, 1968, 2096, 2236, 2512 |
| BceAI | ACGGC | 2 cut(s) | 715, 1137 |
| BciT130I | CCWGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| BciVI | GTATCC | 3 cut(s) | 338, 1584, 1633 |
| BclI | TGATCA | 2 cut(s) | 181, 754 |
| BcoDI | GTCTC | 5 cut(s) | 701, 1573, 1677, 1972, 1994 |
| BcuI | ACTAGT | 1 cut(s) | 1912 |
| BfaI | CTAG | 8 cut(s) | 101, 207, 1347, 1790, 1913, 2124, 2231, 2475 |
| BfmI | CTRYAG | 3 cut(s) | 200, 1205, 1837 |
| BfoI | RGCGCY | 1 cut(s) | 2433 |
| BfrI | CTTAAG | 1 cut(s) | 932 |
| BfuI | GTATCC | 3 cut(s) | 338, 1584, 1633 |
| BisI | GCNGC | 8 cut(s) | 272, 1208, 2029, 2428, 2442, 2457, 2520, 2529 |
| BlpI | GCTNAGC | 1 cut(s) | 1479 |
| BlsI | GCNGC | 8 cut(s) | 273, 1209, 2030, 2429, 2443, 2458, 2521, 2530 |
| BmcAI | AGTACT | 2 cut(s) | 1717, 2229 |
| Bme1390I | CCNGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| Bme18I | GGWCC | 2 cut(s) | 418, 830 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1565 |
| BmgT120I | GGNCC | 4 cut(s) | 231, 418, 830, 1132 |
| BmiI | GGNNCC | 1 cut(s) | 1442 |
| BmrFI | CCNGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| BmsI | GCATC | 5 cut(s) | 7, 247, 592, 2047, 2287 |
| BpiI | GAAGAC | 1 cut(s) | 2194 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 341, 373, 2056, 2088 |
| BpmI | CTGGAG | 3 cut(s) | 1659, 1740, 1960 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1435 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1479 |
| Bpu14I | TTCGAA | 1 cut(s) | 1883 |
| BpuEI | CTTGAG | 3 cut(s) | 1254, 1837, 2452 |
| BsaJI | CCNNGG | 3 cut(s) | 589, 1586, 1728 |
| BsaWI | WCCGGW | 1 cut(s) | 1443 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1325, 1355 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 298, 427, 1622, 2078 |
| Bse1I | ACTGG | 3 cut(s) | 61, 1723, 1943 |
| Bse21I | CCTNAGG | 1 cut(s) | 1419 |
| Bse3DI | GCAATG | 2 cut(s) | 708, 1570 |
| BseAI | TCCGGA | 1 cut(s) | 1443 |
| BseBI | CCWGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| BseDI | CCNNGG | 3 cut(s) | 589, 1586, 1728 |
| BseGI | GGATG | 7 cut(s) | 322, 411, 628, 1561, 2247, 2302, 2504 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 298, 427, 1622, 2078 |
| BseMI | GCAATG | 2 cut(s) | 708, 1570 |
| BseMII | CTCAG | 3 cut(s) | 488, 771, 1824 |
| BseNI | ACTGG | 3 cut(s) | 61, 1723, 1943 |
| BseRI | GAGGAG | 2 cut(s) | 797, 1439 |
| BseSI | GKGCMC | 2 cut(s) | 769, 1991 |
| BseXI | GCAGC | 8 cut(s) | 283, 1219, 2040, 2428, 2439, 2468, 2506, 2540 |
| BsgI | GTGCAG | 1 cut(s) | 2427 |
| BshFI | GGCC | 6 cut(s) | 232, 1134, 1152, 1727, 1742, 2246 |
| BsiHKAI | GWGCWC | 2 cut(s) | 769, 1991 |
| BsiSI | CCGG | 1 cut(s) | 1444 |
| BslFI | GGGAC | 3 cut(s) | 542, 1023, 2413 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 298, 427, 1622, 2078 |
| BsmAI | GTCTC | 5 cut(s) | 701, 1573, 1677, 1972, 1994 |
| BsmBI | CGTCTC | 1 cut(s) | 1677 |
| BsmFI | GGGAC | 3 cut(s) | 542, 1023, 2413 |
| BsmI | GAATGC | 3 cut(s) | 586, 846, 1693 |
| BsnI | GGCC | 6 cut(s) | 232, 1134, 1152, 1727, 1742, 2246 |
| Bsp119I | TTCGAA | 1 cut(s) | 1883 |
| Bsp1286I | GDGCHC | 2 cut(s) | 769, 1991 |
| Bsp13I | TCCGGA | 1 cut(s) | 1443 |
| Bsp1407I | TGTACA | 1 cut(s) | 672 |
| Bsp143I | GATC | 9 cut(s) | 34, 43, 181, 286, 500, 754, 939, 1535, 2091 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1479 |
| BspACI | CCGC | 5 cut(s) | 110, 310, 619, 899, 2425 |
| BspANI | GGCC | 6 cut(s) | 232, 1134, 1152, 1727, 1742, 2246 |
| BspCNI | CTCAG | 3 cut(s) | 487, 772, 1823 |
| BspEI | TCCGGA | 1 cut(s) | 1443 |
| BspHI | TCATGA | 1 cut(s) | 1117 |
| BspLI | GGNNCC | 1 cut(s) | 1442 |
| BspMAI | CTGCAG | 1 cut(s) | 1209 |
| BspPI | GGATC | 3 cut(s) | 51, 281, 1543 |
| BspT104I | TTCGAA | 1 cut(s) | 1883 |
| BspTI | CTTAAG | 1 cut(s) | 932 |
| BsrBI | CCGCTC | 1 cut(s) | 110 |
| BsrDI | GCAATG | 2 cut(s) | 708, 1570 |
| BsrGI | TGTACA | 1 cut(s) | 672 |
| BsrI | ACTGG | 3 cut(s) | 61, 1723, 1943 |
| BssECI | CCNNGG | 3 cut(s) | 589, 1586, 1728 |
| BssMI | GATC | 9 cut(s) | 34, 43, 181, 286, 500, 754, 939, 1535, 2091 |
| BssSI | CACGAG | 1 cut(s) | 2151 |
| BssT1I | CCWWGG | 1 cut(s) | 1586 |
| Bst2BI | CACGAG | 1 cut(s) | 2151 |
| Bst2UI | CCWGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| Bst4CI | ACNGT | 8 cut(s) | 32, 554, 771, 1014, 1829, 1986, 2005, 2404 |
| Bst6I | CTCTTC | 3 cut(s) | 426, 471, 2256 |
| BstAFI | CTTAAG | 1 cut(s) | 932 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2025, 2462 |
| BstAUI | TGTACA | 1 cut(s) | 672 |
| BstBI | TTCGAA | 1 cut(s) | 1883 |
| BstC8I | GCNNGC | 6 cut(s) | 119, 123, 1240, 1476, 1485, 1761 |
| BstDEI | CTNAG | 9 cut(s) | 225, 474, 780, 819, 1419, 1435, 1479, 1810, 2015 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 296, 425, 1620 |
| BstF5I | GGATG | 7 cut(s) | 322, 411, 628, 1561, 2247, 2302, 2504 |
| BstH2I | RGCGCY | 1 cut(s) | 2433 |
| BstHHI | GCGC | 1 cut(s) | 2432 |
| BstKTI | GATC | 9 cut(s) | 37, 46, 184, 289, 503, 757, 942, 1538, 2094 |
| BstMAI | GTCTC | 5 cut(s) | 701, 1573, 1677, 1972, 1994 |
| BstMBI | GATC | 9 cut(s) | 34, 43, 181, 286, 500, 754, 939, 1535, 2091 |
| BstNI | CCWGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| BstNSI | RCATGY | 3 cut(s) | 1072, 2222, 2238 |
| BstSCI | CCNGG | 5 cut(s) | 420, 588, 826, 1594, 1675 |
| BstSFI | CTRYAG | 3 cut(s) | 200, 1205, 1837 |
| BstSLI | GKGCMC | 2 cut(s) | 769, 1991 |
| BstV1I | GCAGC | 8 cut(s) | 283, 1219, 2040, 2428, 2439, 2468, 2506, 2540 |
| BstV2I | GAAGAC | 1 cut(s) | 2194 |
| BstX2I | RGATCY | 2 cut(s) | 43, 1535 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1683 |
| BstYI | RGATCY | 2 cut(s) | 43, 1535 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1419 |
| BsuI | GTATCC | 3 cut(s) | 338, 1584, 1633 |
| BsuRI | GGCC | 6 cut(s) | 232, 1134, 1152, 1727, 1742, 2246 |
| BtsCI | GGATG | 7 cut(s) | 322, 411, 628, 1561, 2247, 2302, 2504 |
| BtsI | GCAGTG | 1 cut(s) | 675 |
| BtsIMutI | CAGTG | 2 cut(s) | 675, 1638 |
| Cac8I | GCNNGC | 6 cut(s) | 119, 123, 1240, 1476, 1485, 1761 |
| CaiI | CAGNNNCTG | 2 cut(s) | 833, 2003 |
| CciI | TCATGA | 1 cut(s) | 1117 |
| CfoI | GCGC | 1 cut(s) | 2432 |
| Cfr13I | GGNCC | 4 cut(s) | 231, 418, 830, 1132 |
| CseI | GACGC | 3 cut(s) | 549, 642, 1569 |
| CsiI | ACCWGGT | 2 cut(s) | 420, 1594 |
| CviAII | CATG | 9 cut(s) | 513, 637, 1069, 1118, 1782, 2219, 2235, 2417, 2545 |
| DdeI | CTNAG | 9 cut(s) | 225, 474, 780, 819, 1419, 1435, 1479, 1810, 2015 |
| DpnI | GATC | 9 cut(s) | 36, 45, 183, 288, 502, 756, 941, 1537, 2093 |
| DpnII | GATC | 9 cut(s) | 34, 43, 181, 286, 500, 754, 939, 1535, 2091 |
| DraI | TTTAAA | 2 cut(s) | 250, 1612 |
| DraIII | CACNNNGTG | 1 cut(s) | 173 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1565 |
| EaeI | YGGCCR | 2 cut(s) | 1150, 1740 |
| Eam1104I | CTCTTC | 3 cut(s) | 426, 471, 2256 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1565 |
| EarI | CTCTTC | 3 cut(s) | 426, 471, 2256 |
| EciI | GGCGGA | 1 cut(s) | 325 |
| Eco130I | CCWWGG | 1 cut(s) | 1586 |
| Eco47I | GGWCC | 2 cut(s) | 418, 830 |
| Eco47III | AGCGCT | 1 cut(s) | 2431 |
| Eco57I | CTGAAG | 4 cut(s) | 539, 1605, 1614, 2244 |
| Eco81I | CCTNAGG | 1 cut(s) | 1419 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 296, 425, 1620 |
| EcoO109I | RGGNCCY | 1 cut(s) | 830 |
| EcoRII | CCWGG | 5 cut(s) | 420, 588, 826, 1594, 1675 |
| EcoT14I | CCWWGG | 1 cut(s) | 1586 |
| EcoT22I | ATGCAT | 1 cut(s) | 2040 |
| ErhI | CCWWGG | 1 cut(s) | 1586 |
| Esp3I | CGTCTC | 1 cut(s) | 1677 |
| FaeI | CATG | 9 cut(s) | 516, 640, 1072, 1121, 1785, 2222, 2238, 2420, 2548 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2081, 2113 |
| FaqI | GGGAC | 3 cut(s) | 542, 1023, 2413 |
| FatI | CATG | 9 cut(s) | 512, 636, 1068, 1117, 1781, 2218, 2234, 2416, 2544 |
| FauI | CCCGC | 1 cut(s) | 612 |
| FauNDI | CATATG | 1 cut(s) | 994 |
| FbaI | TGATCA | 2 cut(s) | 181, 754 |
| Fnu4HI | GCNGC | 8 cut(s) | 272, 1208, 2029, 2428, 2442, 2457, 2520, 2529 |
| FokI | GGATG | 7 cut(s) | 329, 418, 635, 1568, 2254, 2309, 2491 |
| Fsp4HI | GCNGC | 8 cut(s) | 272, 1208, 2029, 2428, 2442, 2457, 2520, 2529 |
| FspBI | CTAG | 8 cut(s) | 101, 207, 1347, 1790, 1913, 2124, 2231, 2475 |
| GlaI | GCGC | 1 cut(s) | 2431 |
| GluI | GCNGC | 8 cut(s) | 272, 1208, 2029, 2428, 2442, 2457, 2520, 2529 |
| GsuI | CTGGAG | 3 cut(s) | 1659, 1740, 1960 |
| HaeII | RGCGCY | 1 cut(s) | 2433 |
| HaeIII | GGCC | 6 cut(s) | 232, 1134, 1152, 1727, 1742, 2246 |
| HapII | CCGG | 1 cut(s) | 1444 |
| HgaI | GACGC | 3 cut(s) | 549, 642, 1569 |
| HhaI | GCGC | 1 cut(s) | 2432 |
| Hin1II | CATG | 9 cut(s) | 516, 640, 1072, 1121, 1785, 2222, 2238, 2420, 2548 |
| Hin6I | GCGC | 1 cut(s) | 2430 |
| HinP1I | GCGC | 1 cut(s) | 2430 |
| HincII | GTYRAC | 1 cut(s) | 2422 |
| HindII | GTYRAC | 1 cut(s) | 2422 |
| HindIII | AAGCTT | 1 cut(s) | 1485 |
| HinfI | GANTC | 5 cut(s) | 176, 1511, 1528, 1858, 1942 |
| HpaI | GTTAAC | 1 cut(s) | 2422 |
| HpaII | CCGG | 1 cut(s) | 1444 |
| HphI | GGTGA | 8 cut(s) | 44, 542, 816, 913, 994, 1030, 1510, 2202 |
| Hpy166II | GTNNAC | 6 cut(s) | 54, 418, 675, 767, 1989, 2422 |
| Hpy188I | TCNGA | 8 cut(s) | 85, 181, 685, 781, 791, 1456, 1527, 2058 |
| Hpy8I | GTNNAC | 6 cut(s) | 54, 418, 675, 767, 1989, 2422 |
| HpyAV | CCTTC | 7 cut(s) | 514, 923, 1145, 1645, 1787, 2156, 2518 |
| HpyCH4III | ACNGT | 8 cut(s) | 32, 554, 771, 1014, 1829, 1986, 2005, 2404 |
| HpyCH4IV | ACGT | 2 cut(s) | 1367, 1378 |
| HpyF3I | CTNAG | 9 cut(s) | 225, 474, 780, 819, 1419, 1435, 1479, 1810, 2015 |
| HpySE526I | ACGT | 2 cut(s) | 1367, 1378 |
| Hsp92II | CATG | 9 cut(s) | 516, 640, 1072, 1121, 1785, 2222, 2238, 2420, 2548 |
| HspAI | GCGC | 1 cut(s) | 2430 |
| Kpn2I | TCCGGA | 1 cut(s) | 1443 |
| Ksp22I | TGATCA | 2 cut(s) | 181, 754 |
| KspAI | GTTAAC | 1 cut(s) | 2422 |
| Kzo9I | GATC | 9 cut(s) | 34, 43, 181, 286, 500, 754, 939, 1535, 2091 |
| LmnI | GCTCC | 4 cut(s) | 99, 1333, 1446, 2064 |
| Lsp1109I | GCAGC | 8 cut(s) | 283, 1219, 2040, 2428, 2439, 2468, 2506, 2540 |
| LweI | GCATC | 5 cut(s) | 7, 247, 592, 2047, 2287 |
| MabI | ACCWGGT | 2 cut(s) | 420, 1594 |
| MaeI | CTAG | 8 cut(s) | 101, 207, 1347, 1790, 1913, 2124, 2231, 2475 |
| MaeII | ACGT | 2 cut(s) | 1367, 1378 |
| MaeIII | GTNAC | 6 cut(s) | 154, 173, 736, 822, 1841, 2307 |
| MalI | GATC | 9 cut(s) | 36, 45, 183, 288, 502, 756, 941, 1537, 2093 |
| MbiI | CCGCTC | 1 cut(s) | 110 |
| MboI | GATC | 9 cut(s) | 34, 43, 181, 286, 500, 754, 939, 1535, 2091 |
| MfeI | CAATTG | 2 cut(s) | 2341, 2523 |
| MflI | RGATCY | 2 cut(s) | 43, 1535 |
| MhlI | GDGCHC | 2 cut(s) | 769, 1991 |
| MlsI | TGGCCA | 1 cut(s) | 1742 |
| MluNI | TGGCCA | 1 cut(s) | 1742 |
| MlyI | GAGTC | 2 cut(s) | 170, 1951 |
| MmeI | TCCRAC | 1 cut(s) | 1350 |
| Mox20I | TGGCCA | 1 cut(s) | 1742 |
| Mph1103I | ATGCAT | 1 cut(s) | 2040 |
| MroI | TCCGGA | 1 cut(s) | 1443 |
| MroXI | GAANNNNTTC | 1 cut(s) | 908 |
| MscI | TGGCCA | 1 cut(s) | 1742 |
| Msp20I | TGGCCA | 1 cut(s) | 1742 |
| MspA1I | CMGCKG | 1 cut(s) | 2531 |
| MspCI | CTTAAG | 1 cut(s) | 932 |
| MspI | CCGG | 1 cut(s) | 1444 |
| MspR9I | CCNGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| MunI | CAATTG | 2 cut(s) | 2341, 2523 |
| Mva1269I | GAATGC | 3 cut(s) | 586, 846, 1693 |
| MvaI | CCWGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| NdeI | CATATG | 1 cut(s) | 994 |
| NdeII | GATC | 9 cut(s) | 34, 43, 181, 286, 500, 754, 939, 1535, 2091 |
| NlaIII | CATG | 9 cut(s) | 516, 640, 1072, 1121, 1785, 2222, 2238, 2420, 2548 |
| NlaIV | GGNNCC | 1 cut(s) | 1442 |
| NmeAIII | GCCGAG | 1 cut(s) | 1753 |
| NmuCI | GTSAC | 4 cut(s) | 154, 173, 822, 1841 |
| NsiI | ATGCAT | 1 cut(s) | 2040 |
| NspI | RCATGY | 3 cut(s) | 1072, 2222, 2238 |
| NspV | TTCGAA | 1 cut(s) | 1883 |
| PagI | TCATGA | 1 cut(s) | 1117 |
| PctI | GAATGC | 3 cut(s) | 586, 846, 1693 |
| PdmI | GAANNNNTTC | 1 cut(s) | 908 |
| PfeI | GAWTC | 3 cut(s) | 1511, 1528, 1858 |
| PkrI | GCNGC | 8 cut(s) | 273, 1209, 2030, 2429, 2443, 2458, 2521, 2530 |
| PleI | GAGTC | 2 cut(s) | 170, 1950 |
| PpsI | GAGTC | 2 cut(s) | 170, 1950 |
| PpuMI | RGGWCCY | 1 cut(s) | 830 |
| Psp5II | RGGWCCY | 1 cut(s) | 830 |
| Psp6I | CCWGG | 5 cut(s) | 420, 588, 826, 1594, 1675 |
| PspGI | CCWGG | 5 cut(s) | 420, 588, 826, 1594, 1675 |
| PspN4I | GGNNCC | 1 cut(s) | 1442 |
| PspPI | GGNCC | 4 cut(s) | 231, 418, 830, 1132 |
| PspPPI | RGGWCCY | 1 cut(s) | 830 |
| PstI | CTGCAG | 1 cut(s) | 1209 |
| PstNI | CAGNNNCTG | 2 cut(s) | 833, 2003 |
| PsuI | RGATCY | 2 cut(s) | 43, 1535 |
| PvuII | CAGCTG | 1 cut(s) | 2531 |
| SatI | GCNGC | 8 cut(s) | 272, 1208, 2029, 2428, 2442, 2457, 2520, 2529 |
| Sau3AI | GATC | 9 cut(s) | 34, 43, 181, 286, 500, 754, 939, 1535, 2091 |
| Sau96I | GGNCC | 4 cut(s) | 231, 418, 830, 1132 |
| ScaI | AGTACT | 2 cut(s) | 1717, 2229 |
| SchI | GAGTC | 2 cut(s) | 170, 1951 |
| ScrFI | CCNGG | 5 cut(s) | 422, 590, 828, 1596, 1677 |
| SduI | GDGCHC | 2 cut(s) | 769, 1991 |
| SexAI | ACCWGGT | 2 cut(s) | 420, 1594 |
| SfaNI | GCATC | 5 cut(s) | 7, 247, 592, 2047, 2287 |
| SfcI | CTRYAG | 3 cut(s) | 200, 1205, 1837 |
| SfuI | TTCGAA | 1 cut(s) | 1883 |
| SinI | GGWCC | 2 cut(s) | 418, 830 |
| SmlI | CTYRAG | 4 cut(s) | 932, 1269, 1852, 2467 |
| SmoI | CTYRAG | 4 cut(s) | 932, 1269, 1852, 2467 |
| SpeI | ACTAGT | 1 cut(s) | 1912 |
| SsiI | CCGC | 5 cut(s) | 110, 310, 619, 899, 2425 |
| SspI | AATATT | 1 cut(s) | 1127 |
| SspMI | CTAG | 8 cut(s) | 101, 207, 1347, 1790, 1913, 2124, 2231, 2475 |
| StyD4I | CCNGG | 5 cut(s) | 420, 588, 826, 1594, 1675 |
| StyI | CCWWGG | 1 cut(s) | 1586 |
| TaaI | ACNGT | 8 cut(s) | 32, 554, 771, 1014, 1829, 1986, 2005, 2404 |
| TaiI | ACGT | 2 cut(s) | 1370, 1381 |
| TaqI | TCGA | 4 cut(s) | 503, 568, 1085, 1883 |
| TatI | WGTACW | 3 cut(s) | 672, 1715, 2227 |
| TfiI | GAWTC | 3 cut(s) | 1511, 1528, 1858 |
| TscAI | CASTG | 2 cut(s) | 682, 1638 |
| TseFI | GTSAC | 4 cut(s) | 154, 173, 822, 1841 |
| TseI | GCWGC | 8 cut(s) | 271, 1207, 2028, 2427, 2441, 2456, 2519, 2528 |
| Tsp45I | GTSAC | 4 cut(s) | 154, 173, 822, 1841 |
| TspDTI | ATGAA | 4 cut(s) | 764, 765, 905, 1134 |
| TspGWI | ACGGA | 3 cut(s) | 86, 329, 2309 |
| TspRI | CASTG | 2 cut(s) | 682, 1638 |
| Vha464I | CTTAAG | 1 cut(s) | 932 |
| VneI | GTGCAC | 2 cut(s) | 765, 1987 |
| VpaK11BI | GGWCC | 2 cut(s) | 418, 830 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 296, 425, 1620 |
| XapI | RAATTY | 9 cut(s) | 251, 972, 1021, 1080, 1315, 1457, 1805, 1921, 2361 |
| XbaI | TCTAGA | 1 cut(s) | 100 |
| XceI | RCATGY | 3 cut(s) | 1072, 2222, 2238 |
| XmnI | GAANNNNTTC | 1 cut(s) | 908 |
| XspI | CTAG | 8 cut(s) | 101, 207, 1347, 1790, 1913, 2124, 2231, 2475 |
| ZrmI | AGTACT | 2 cut(s) | 1717, 2229 |
| Zsp2I | ATGCAT | 1 cut(s) | 2040 |