ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 99 | 9.6e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 56 |
| AfaI | GTAC | 1 cut(s) | 193 |
| AgsI | TTSAA | 1 cut(s) | 49 |
| AluBI | AGCT | 2 cut(s) | 89, 184 |
| AluI | AGCT | 2 cut(s) | 89, 184 |
| AoxI | GGCC | 1 cut(s) | 108 |
| ApeKI | GCWGC | 4 cut(s) | 53, 77, 80, 145 |
| AsuHPI | GGTGA | 1 cut(s) | 235 |
| BbvI | GCAGC | 4 cut(s) | 40, 89, 92, 157 |
| BccI | CCATC | 3 cut(s) | 42, 209, 220 |
| BfmI | CTRYAG | 2 cut(s) | 104, 179 |
| BisI | GCNGC | 5 cut(s) | 54, 57, 78, 81, 146 |
| BlsI | GCNGC | 5 cut(s) | 55, 58, 79, 82, 147 |
| BmsI | GCATC | 1 cut(s) | 68 |
| BsaAI | YACGTR | 1 cut(s) | 29 |
| Bse1I | ACTGG | 1 cut(s) | 68 |
| BseGI | GGATG | 2 cut(s) | 23, 271 |
| BseNI | ACTGG | 1 cut(s) | 68 |
| BseXI | GCAGC | 4 cut(s) | 40, 89, 92, 157 |
| BsgI | GTGCAG | 1 cut(s) | 146 |
| BshFI | GGCC | 1 cut(s) | 110 |
| BsnI | GGCC | 1 cut(s) | 110 |
| BspACI | CCGC | 1 cut(s) | 56 |
| BspANI | GGCC | 1 cut(s) | 110 |
| BspHI | TCATGA | 1 cut(s) | 205 |
| BspMAI | CTGCAG | 1 cut(s) | 108 |
| BsrI | ACTGG | 1 cut(s) | 68 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| BstBAI | YACGTR | 1 cut(s) | 29 |
| BstC8I | GCNNGC | 1 cut(s) | 108 |
| BstF5I | GGATG | 2 cut(s) | 23, 271 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 86 |
| BstSFI | CTRYAG | 2 cut(s) | 104, 179 |
| BstV1I | GCAGC | 4 cut(s) | 40, 89, 92, 157 |
| BsuRI | GGCC | 1 cut(s) | 110 |
| BtsCI | GGATG | 2 cut(s) | 23, 271 |
| BtsI | GCAGTG | 1 cut(s) | 129 |
| BtsIMutI | CAGTG | 1 cut(s) | 129 |
| Cac8I | GCNNGC | 1 cut(s) | 108 |
| CciI | TCATGA | 1 cut(s) | 205 |
| CseI | GACGC | 1 cut(s) | 72 |
| Csp6I | GTAC | 1 cut(s) | 192 |
| CviAII | CATG | 3 cut(s) | 149, 206, 293 |
| CviJI | RGCY | 4 cut(s) | 53, 89, 110, 184 |
| CviKI_1 | RGCY | 4 cut(s) | 53, 89, 110, 184 |
| CviQI | GTAC | 1 cut(s) | 192 |
| Eco147I | AGGCCT | 1 cut(s) | 110 |
| FaeI | CATG | 3 cut(s) | 152, 209, 296 |
| FaiI | YATR | 5 cut(s) | 26, 150, 197, 207, 294 |
| FatI | CATG | 3 cut(s) | 148, 205, 292 |
| Fnu4HI | GCNGC | 5 cut(s) | 54, 57, 78, 81, 146 |
| FokI | GGATG | 2 cut(s) | 30, 258 |
| Fsp4HI | GCNGC | 5 cut(s) | 54, 57, 78, 81, 146 |
| GluI | GCNGC | 5 cut(s) | 54, 57, 78, 81, 146 |
| HaeIII | GGCC | 1 cut(s) | 110 |
| HgaI | GACGC | 1 cut(s) | 72 |
| Hin1II | CATG | 3 cut(s) | 152, 209, 296 |
| HphI | GGTGA | 1 cut(s) | 235 |
| Hpy188III | TCNNGA | 2 cut(s) | 63, 206 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4IV | ACGT | 1 cut(s) | 28 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 77, 106, 127, 145 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 86 |
| HpySE526I | ACGT | 1 cut(s) | 28 |
| Hsp92II | CATG | 3 cut(s) | 152, 209, 296 |
| LpnPI | CCDG | 2 cut(s) | 81, 92 |
| Lsp1109I | GCAGC | 4 cut(s) | 40, 89, 92, 157 |
| LweI | GCATC | 1 cut(s) | 68 |
| MaeII | ACGT | 1 cut(s) | 28 |
| MaeIII | GTNAC | 2 cut(s) | 29, 170 |
| MboII | GAAGA | 3 cut(s) | 221, 224, 275 |
| MluCI | AATT | 2 cut(s) | 12, 277 |
| MnlI | CCTC | 1 cut(s) | 121 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 86 |
| NlaIII | CATG | 3 cut(s) | 152, 209, 296 |
| NmuCI | GTSAC | 2 cut(s) | 29, 170 |
| PagI | TCATGA | 1 cut(s) | 205 |
| PceI | AGGCCT | 1 cut(s) | 110 |
| PkrI | GCNGC | 5 cut(s) | 55, 58, 79, 82, 147 |
| Ppu21I | YACGTR | 1 cut(s) | 29 |
| PstI | CTGCAG | 1 cut(s) | 108 |
| RsaI | GTAC | 1 cut(s) | 193 |
| RsaNI | GTAC | 1 cut(s) | 192 |
| SatI | GCNGC | 5 cut(s) | 54, 57, 78, 81, 146 |
| SetI | ASST | 3 cut(s) | 31, 91, 186 |
| SfaNI | GCATC | 1 cut(s) | 68 |
| SfcI | CTRYAG | 2 cut(s) | 104, 179 |
| Sse9I | AATT | 2 cut(s) | 12, 277 |
| SseBI | AGGCCT | 1 cut(s) | 110 |
| SsiI | CCGC | 1 cut(s) | 56 |
| StuI | AGGCCT | 1 cut(s) | 110 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaiI | ACGT | 1 cut(s) | 31 |
| TasI | AATT | 2 cut(s) | 12, 277 |
| TauI | GCSGC | 1 cut(s) | 59 |
| TscAI | CASTG | 1 cut(s) | 129 |
| TseFI | GTSAC | 2 cut(s) | 29, 170 |
| TseI | GCWGC | 4 cut(s) | 53, 77, 80, 145 |
| Tsp45I | GTSAC | 2 cut(s) | 29, 170 |
| TspDTI | ATGAA | 3 cut(s) | 165, 222, 261 |
| TspRI | CASTG | 1 cut(s) | 129 |