ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 174 |
| AcsI | RAATTY | 1 cut(s) | 548 |
| AcuI | CTGAAG | 1 cut(s) | 276 |
| AcyI | GRCGYC | 1 cut(s) | 389 |
| AfaI | GTAC | 3 cut(s) | 196, 223, 434 |
| AgeI | ACCGGT | 1 cut(s) | 45 |
| AjnI | CCWGG | 3 cut(s) | 177, 337, 509 |
| AluBI | AGCT | 3 cut(s) | 149, 160, 290 |
| AluI | AGCT | 3 cut(s) | 149, 160, 290 |
| AoxI | GGCC | 1 cut(s) | 180 |
| ApeKI | GCWGC | 2 cut(s) | 8, 157 |
| ApoI | RAATTY | 1 cut(s) | 548 |
| AsiGI | ACCGGT | 1 cut(s) | 45 |
| AspS9I | GGNCC | 2 cut(s) | 43, 181 |
| AsuC2I | CCSGG | 1 cut(s) | 41 |
| AvaII | GGWCC | 1 cut(s) | 43 |
| BaeGI | GKGCMC | 1 cut(s) | 338 |
| BanI | GGYRCC | 1 cut(s) | 174 |
| BbvI | GCAGC | 1 cut(s) | 169 |
| BccI | CCATC | 2 cut(s) | 181, 357 |
| BciT130I | CCWGG | 3 cut(s) | 179, 339, 511 |
| BcnI | CCSGG | 1 cut(s) | 41 |
| BfaI | CTAG | 2 cut(s) | 131, 252 |
| BfmI | CTRYAG | 2 cut(s) | 213, 525 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 9, 158 |
| BlsI | GCNGC | 2 cut(s) | 10, 159 |
| BmcAI | AGTACT | 3 cut(s) | 196, 223, 434 |
| Bme1390I | CCNGG | 4 cut(s) | 41, 179, 339, 511 |
| Bme18I | GGWCC | 1 cut(s) | 43 |
| BmgT120I | GGNCC | 2 cut(s) | 43, 181 |
| BmiI | GGNNCC | 2 cut(s) | 44, 176 |
| BmrFI | CCNGG | 4 cut(s) | 41, 179, 339, 511 |
| BmsI | GCATC | 1 cut(s) | 271 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 458, 490 |
| BpmI | CTGGAG | 1 cut(s) | 493 |
| BpuEI | CTTGAG | 1 cut(s) | 446 |
| BpuMI | CCSGG | 1 cut(s) | 41 |
| BsaHI | GRCGYC | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 4 cut(s) | 170, 337, 338, 510 |
| BsaWI | WCCGGW | 2 cut(s) | 45, 446 |
| Bse118I | RCCGGY | 1 cut(s) | 45 |
| Bse1I | ACTGG | 1 cut(s) | 229 |
| Bse3DI | GCAATG | 1 cut(s) | 279 |
| BseBI | CCWGG | 3 cut(s) | 179, 339, 511 |
| BseDI | CCNNGG | 4 cut(s) | 170, 337, 338, 510 |
| BseMI | GCAATG | 1 cut(s) | 279 |
| BseMII | CTCAG | 2 cut(s) | 427, 501 |
| BseNI | ACTGG | 1 cut(s) | 229 |
| BseRI | GAGGAG | 1 cut(s) | 443 |
| BseSI | GKGCMC | 1 cut(s) | 338 |
| BseXI | GCAGC | 1 cut(s) | 169 |
| BseYI | CCCAGC | 1 cut(s) | 160 |
| BshFI | GGCC | 1 cut(s) | 182 |
| BshNI | GGYRCC | 1 cut(s) | 174 |
| BshTI | ACCGGT | 1 cut(s) | 45 |
| BsiSI | CCGG | 3 cut(s) | 40, 46, 447 |
| BslFI | GGGAC | 1 cut(s) | 56 |
| BsmFI | GGGAC | 1 cut(s) | 56 |
| BsmI | GAATGC | 1 cut(s) | 109 |
| BsnI | GGCC | 1 cut(s) | 182 |
| Bsp1286I | GDGCHC | 1 cut(s) | 338 |
| Bsp143I | GATC | 2 cut(s) | 372, 416 |
| BspANI | GGCC | 1 cut(s) | 182 |
| BspCNI | CTCAG | 2 cut(s) | 426, 500 |
| BspLI | GGNNCC | 2 cut(s) | 44, 176 |
| BspT107I | GGYRCC | 1 cut(s) | 174 |
| BsrDI | GCAATG | 1 cut(s) | 279 |
| BsrFI | RCCGGY | 1 cut(s) | 45 |
| BsrI | ACTGG | 1 cut(s) | 229 |
| BssAI | RCCGGY | 1 cut(s) | 45 |
| BssECI | CCNNGG | 4 cut(s) | 170, 337, 338, 510 |
| BssMI | GATC | 2 cut(s) | 372, 416 |
| BssNI | GRCGYC | 1 cut(s) | 389 |
| BssT1I | CCWWGG | 1 cut(s) | 170 |
| Bst2UI | CCWGG | 3 cut(s) | 179, 339, 511 |
| Bst4CI | ACNGT | 1 cut(s) | 404 |
| BstACI | GRCGYC | 1 cut(s) | 389 |
| BstDEI | CTNAG | 2 cut(s) | 413, 487 |
| BstKTI | GATC | 2 cut(s) | 375, 419 |
| BstMBI | GATC | 2 cut(s) | 372, 416 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 127, 188, 296 |
| BstNI | CCWGG | 3 cut(s) | 179, 339, 511 |
| BstSCI | CCNGG | 4 cut(s) | 39, 177, 337, 509 |
| BstSFI | CTRYAG | 2 cut(s) | 213, 525 |
| BstSLI | GKGCMC | 1 cut(s) | 338 |
| BstV1I | GCAGC | 1 cut(s) | 169 |
| BsuRI | GGCC | 1 cut(s) | 182 |
| BtsI | GCAGTG | 1 cut(s) | 501 |
| BtsIMutI | CAGTG | 1 cut(s) | 501 |
| Cfr10I | RCCGGY | 1 cut(s) | 45 |
| Cfr13I | GGNCC | 2 cut(s) | 43, 181 |
| CseI | GACGC | 1 cut(s) | 378 |
| Csp6I | GTAC | 3 cut(s) | 195, 222, 433 |
| CspAI | ACCGGT | 1 cut(s) | 45 |
| CviAII | CATG | 2 cut(s) | 316, 532 |
| CviQI | GTAC | 3 cut(s) | 195, 222, 433 |
| DdeI | CTNAG | 2 cut(s) | 413, 487 |
| DpnI | GATC | 2 cut(s) | 374, 418 |
| DpnII | GATC | 2 cut(s) | 372, 416 |
| Eco130I | CCWWGG | 1 cut(s) | 170 |
| Eco47I | GGWCC | 1 cut(s) | 43 |
| Eco57I | CTGAAG | 1 cut(s) | 276 |
| EcoRII | CCWGG | 3 cut(s) | 177, 337, 509 |
| EcoT14I | CCWWGG | 1 cut(s) | 170 |
| ErhI | CCWWGG | 1 cut(s) | 170 |
| FaeI | CATG | 2 cut(s) | 319, 535 |
| FaiI | YATR | 5 cut(s) | 58, 208, 215, 317, 533 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 377, 409 |
| FaqI | GGGAC | 1 cut(s) | 56 |
| FatI | CATG | 2 cut(s) | 315, 531 |
| Fnu4HI | GCNGC | 2 cut(s) | 9, 158 |
| Fsp4HI | GCNGC | 2 cut(s) | 9, 158 |
| FspBI | CTAG | 2 cut(s) | 131, 252 |
| GluI | GCNGC | 2 cut(s) | 9, 158 |
| GsaI | CCCAGC | 1 cut(s) | 164 |
| GsuI | CTGGAG | 1 cut(s) | 493 |
| HaeIII | GGCC | 1 cut(s) | 182 |
| HapII | CCGG | 3 cut(s) | 40, 46, 447 |
| HgaI | GACGC | 1 cut(s) | 378 |
| Hin1I | GRCGYC | 1 cut(s) | 389 |
| Hin1II | CATG | 2 cut(s) | 319, 535 |
| HinfI | GANTC | 1 cut(s) | 411 |
| HpaII | CCGG | 3 cut(s) | 40, 46, 447 |
| Hpy166II | GTNNAC | 1 cut(s) | 98 |
| Hpy188I | TCNGA | 2 cut(s) | 295, 416 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 274 |
| Hpy8I | GTNNAC | 1 cut(s) | 98 |
| HpyCH4III | ACNGT | 1 cut(s) | 404 |
| HpyCH4V | TGCA | 6 cut(s) | 85, 107, 237, 262, 284, 315 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 127, 188, 296 |
| HpyF3I | CTNAG | 2 cut(s) | 413, 487 |
| Hsp92I | GRCGYC | 1 cut(s) | 389 |
| Hsp92II | CATG | 2 cut(s) | 319, 535 |
| Kzo9I | GATC | 2 cut(s) | 372, 416 |
| Lsp1109I | GCAGC | 1 cut(s) | 169 |
| LweI | GCATC | 1 cut(s) | 271 |
| MaeI | CTAG | 2 cut(s) | 131, 252 |
| MalI | GATC | 2 cut(s) | 374, 418 |
| MboI | GATC | 2 cut(s) | 372, 416 |
| MboII | GAAGA | 3 cut(s) | 146, 367, 370 |
| MhlI | GDGCHC | 1 cut(s) | 338 |
| MluCI | AATT | 4 cut(s) | 138, 320, 519, 548 |
| MlyI | GAGTC | 1 cut(s) | 405 |
| MnlI | CCTC | 7 cut(s) | 289, 317, 421, 454, 484, 508, 517 |
| MseI | TTAA | 7 cut(s) | 144, 248, 323, 383, 399, 459, 553 |
| MspA1I | CMGCKG | 1 cut(s) | 160 |
| MspI | CCGG | 3 cut(s) | 40, 46, 447 |
| MspR9I | CCNGG | 4 cut(s) | 41, 179, 339, 511 |
| Mva1269I | GAATGC | 1 cut(s) | 109 |
| MvaI | CCWGG | 3 cut(s) | 179, 339, 511 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 127, 188, 296 |
| NciI | CCSGG | 1 cut(s) | 41 |
| NdeII | GATC | 2 cut(s) | 372, 416 |
| NlaIII | CATG | 2 cut(s) | 319, 535 |
| NlaIV | GGNNCC | 2 cut(s) | 44, 176 |
| PasI | CCCWGGG | 1 cut(s) | 338 |
| PctI | GAATGC | 1 cut(s) | 109 |
| PinAI | ACCGGT | 1 cut(s) | 45 |
| PkrI | GCNGC | 2 cut(s) | 10, 159 |
| PleI | GAGTC | 1 cut(s) | 405 |
| PpsI | GAGTC | 1 cut(s) | 405 |
| Psp6I | CCWGG | 3 cut(s) | 177, 337, 509 |
| PspFI | CCCAGC | 1 cut(s) | 160 |
| PspGI | CCWGG | 3 cut(s) | 177, 337, 509 |
| PspN4I | GGNNCC | 2 cut(s) | 44, 176 |
| PspPI | GGNCC | 2 cut(s) | 43, 181 |
| PvuII | CAGCTG | 1 cut(s) | 160 |
| RsaI | GTAC | 3 cut(s) | 196, 223, 434 |
| RsaNI | GTAC | 3 cut(s) | 195, 222, 433 |
| SaqAI | TTAA | 7 cut(s) | 144, 248, 323, 383, 399, 459, 553 |
| SatI | GCNGC | 2 cut(s) | 9, 158 |
| Sau3AI | GATC | 2 cut(s) | 372, 416 |
| Sau96I | GGNCC | 2 cut(s) | 43, 181 |
| ScaI | AGTACT | 3 cut(s) | 196, 223, 434 |
| SchI | GAGTC | 1 cut(s) | 405 |
| ScrFI | CCNGG | 4 cut(s) | 41, 179, 339, 511 |
| SduI | GDGCHC | 1 cut(s) | 338 |
| SetI | ASST | 5 cut(s) | 151, 162, 180, 292, 309 |
| SfaNI | GCATC | 1 cut(s) | 271 |
| SfcI | CTRYAG | 2 cut(s) | 213, 525 |
| SinI | GGWCC | 1 cut(s) | 43 |
| SmlI | CTYRAG | 1 cut(s) | 425 |
| SmoI | CTYRAG | 1 cut(s) | 425 |
| Sse9I | AATT | 4 cut(s) | 138, 320, 519, 548 |
| SspI | AATATT | 2 cut(s) | 246, 538 |
| SspMI | CTAG | 2 cut(s) | 131, 252 |
| StyD4I | CCNGG | 4 cut(s) | 39, 177, 337, 509 |
| StyI | CCWWGG | 1 cut(s) | 170 |
| TaaI | ACNGT | 1 cut(s) | 404 |
| TasI | AATT | 4 cut(s) | 138, 320, 519, 548 |
| TatI | WGTACW | 3 cut(s) | 194, 221, 432 |
| Tru1I | TTAA | 7 cut(s) | 144, 248, 323, 383, 399, 459, 553 |
| Tru9I | TTAA | 7 cut(s) | 144, 248, 323, 383, 399, 459, 553 |
| TscAI | CASTG | 1 cut(s) | 508 |
| TseI | GCWGC | 2 cut(s) | 8, 157 |
| TspDTI | ATGAA | 2 cut(s) | 332, 548 |
| TspRI | CASTG | 1 cut(s) | 508 |
| VpaK11BI | GGWCC | 1 cut(s) | 43 |
| XapI | RAATTY | 1 cut(s) | 548 |
| XspI | CTAG | 2 cut(s) | 131, 252 |
| ZrmI | AGTACT | 3 cut(s) | 196, 223, 434 |