zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 96 | 1.2e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 83 |
| AclWI | GGATC | 2 cut(s) | 47, 217 |
| AcsI | RAATTY | 1 cut(s) | 244 |
| AcuI | CTGAAG | 1 cut(s) | 51 |
| AgsI | TTSAA | 1 cut(s) | 194 |
| AluBI | AGCT | 1 cut(s) | 130 |
| AluI | AGCT | 1 cut(s) | 130 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| AlwI | GGATC | 2 cut(s) | 47, 217 |
| ApeKI | GCWGC | 1 cut(s) | 160 |
| ApoI | RAATTY | 1 cut(s) | 244 |
| AsuHPI | GGTGA | 1 cut(s) | 71 |
| BbvI | GCAGC | 1 cut(s) | 147 |
| BccI | CCATC | 1 cut(s) | 99 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 247, 281 |
| BclI | TGATCA | 1 cut(s) | 61 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BisI | GCNGC | 1 cut(s) | 161 |
| BlsI | GCNGC | 1 cut(s) | 162 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 270 |
| Bsa29I | ATCGAT | 1 cut(s) | 267 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| BseCI | ATCGAT | 1 cut(s) | 267 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseMII | CTCAG | 2 cut(s) | 67, 210 |
| BseXI | GCAGC | 1 cut(s) | 147 |
| BshVI | ATCGAT | 1 cut(s) | 267 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsmI | GAATGC | 1 cut(s) | 11 |
| Bsp143I | GATC | 4 cut(s) | 39, 61, 222, 264 |
| BspCNI | CTCAG | 2 cut(s) | 66, 211 |
| BspDI | ATCGAT | 1 cut(s) | 267 |
| BspPI | GGATC | 2 cut(s) | 47, 217 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BssMI | GATC | 4 cut(s) | 39, 61, 222, 264 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 86 |
| BstDEI | CTNAG | 2 cut(s) | 53, 219 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstKTI | GATC | 4 cut(s) | 42, 64, 225, 267 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMBI | GATC | 4 cut(s) | 39, 61, 222, 264 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 86, 169 |
| BstV1I | GCAGC | 1 cut(s) | 147 |
| BstX2I | RGATCY | 1 cut(s) | 222 |
| BstYI | RGATCY | 1 cut(s) | 222 |
| Bsu15I | ATCGAT | 1 cut(s) | 267 |
| BsuTUI | ATCGAT | 1 cut(s) | 267 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| ClaI | ATCGAT | 1 cut(s) | 267 |
| CviAII | CATG | 5 cut(s) | 20, 76, 168, 229, 254 |
| CviJI | RGCY | 3 cut(s) | 130, 212, 286 |
| CviKI_1 | RGCY | 3 cut(s) | 130, 212, 286 |
| DdeI | CTNAG | 2 cut(s) | 53, 219 |
| DpnI | GATC | 4 cut(s) | 41, 63, 224, 266 |
| DpnII | GATC | 4 cut(s) | 39, 61, 222, 264 |
| Eco32I | GATATC | 1 cut(s) | 177 |
| Eco57I | CTGAAG | 1 cut(s) | 51 |
| EcoRV | GATATC | 1 cut(s) | 177 |
| FaeI | CATG | 5 cut(s) | 23, 79, 171, 232, 257 |
| FaiI | YATR | 6 cut(s) | 21, 77, 169, 209, 230, 255 |
| FatI | CATG | 5 cut(s) | 19, 75, 167, 228, 253 |
| FbaI | TGATCA | 1 cut(s) | 61 |
| Fnu4HI | GCNGC | 1 cut(s) | 161 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 1 cut(s) | 161 |
| GluI | GCNGC | 1 cut(s) | 161 |
| Hin1II | CATG | 5 cut(s) | 23, 79, 171, 232, 257 |
| HphI | GGTGA | 1 cut(s) | 71 |
| Hpy188I | TCNGA | 5 cut(s) | 56, 181, 220, 264, 278 |
| HpyAV | CCTTC | 1 cut(s) | 26 |
| HpyCH4IV | ACGT | 2 cut(s) | 83, 96 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 75, 163 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 86, 169 |
| HpyF3I | CTNAG | 2 cut(s) | 53, 219 |
| HpySE526I | ACGT | 2 cut(s) | 83, 96 |
| Hsp92II | CATG | 5 cut(s) | 23, 79, 171, 232, 257 |
| Ksp22I | TGATCA | 1 cut(s) | 61 |
| Kzo9I | GATC | 4 cut(s) | 39, 61, 222, 264 |
| LmnI | GCTCC | 2 cut(s) | 8, 250 |
| LpnPI | CCDG | 1 cut(s) | 29 |
| Lsp1109I | GCAGC | 1 cut(s) | 147 |
| MaeII | ACGT | 2 cut(s) | 83, 96 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 4 cut(s) | 41, 63, 224, 266 |
| MboI | GATC | 4 cut(s) | 39, 61, 222, 264 |
| MflI | RGATCY | 1 cut(s) | 222 |
| MluCI | AATT | 1 cut(s) | 244 |
| MnlI | CCTC | 1 cut(s) | 50 |
| MseI | TTAA | 1 cut(s) | 141 |
| Mva1269I | GAATGC | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 86, 169 |
| NdeII | GATC | 4 cut(s) | 39, 61, 222, 264 |
| NlaIII | CATG | 5 cut(s) | 23, 79, 171, 232, 257 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| PctI | GAATGC | 1 cut(s) | 11 |
| PkrI | GCNGC | 1 cut(s) | 162 |
| Psp1406I | AACGTT | 1 cut(s) | 83 |
| PsuI | RGATCY | 1 cut(s) | 222 |
| SaqAI | TTAA | 1 cut(s) | 141 |
| SatI | GCNGC | 1 cut(s) | 161 |
| Sau3AI | GATC | 4 cut(s) | 39, 61, 222, 264 |
| SetI | ASST | 4 cut(s) | 61, 86, 99, 132 |
| Sse9I | AATT | 1 cut(s) | 244 |
| TaiI | ACGT | 2 cut(s) | 86, 99 |
| TaqI | TCGA | 2 cut(s) | 25, 267 |
| TasI | AATT | 1 cut(s) | 244 |
| Tru1I | TTAA | 1 cut(s) | 141 |
| Tru9I | TTAA | 1 cut(s) | 141 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| TseI | GCWGC | 1 cut(s) | 160 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| XapI | RAATTY | 1 cut(s) | 244 |