ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 61 |
| Acc36I | ACCTGC | 1 cut(s) | 641 |
| Acc65I | GGTACC | 1 cut(s) | 688 |
| AccB1I | GGYRCC | 1 cut(s) | 688 |
| AccII | CGCG | 2 cut(s) | 175, 517 |
| AccIII | TCCGGA | 1 cut(s) | 961 |
| AciI | CCGC | 2 cut(s) | 175, 517 |
| AclWI | GGATC | 8 cut(s) | 214, 262, 410, 423, 867, 1102, 1115, 1178 |
| AcoI | YGGCCR | 1 cut(s) | 888 |
| AcsI | RAATTY | 1 cut(s) | 660 |
| AcuI | CTGAAG | 2 cut(s) | 449, 614 |
| AfaI | GTAC | 9 cut(s) | 199, 302, 361, 385, 484, 539, 690, 826, 994 |
| AfeI | AGCGCT | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 93, 376, 897, 1011, 1151 |
| AgsI | TTSAA | 3 cut(s) | 609, 670, 856 |
| AjnI | CCWGG | 3 cut(s) | 86, 115, 919 |
| AleI | CACNNNNGTG | 1 cut(s) | 557 |
| AluBI | AGCT | 8 cut(s) | 24, 333, 353, 463, 604, 819, 950, 1165 |
| AluI | AGCT | 8 cut(s) | 24, 333, 353, 463, 604, 819, 950, 1165 |
| Alw21I | GWGCWC | 1 cut(s) | 1159 |
| Alw26I | GTCTC | 2 cut(s) | 217, 1002 |
| Alw44I | GTGCAC | 1 cut(s) | 1155 |
| AlwI | GGATC | 8 cut(s) | 214, 262, 410, 423, 867, 1102, 1115, 1178 |
| Aor13HI | TCCGGA | 1 cut(s) | 961 |
| Aor51HI | AGCGCT | 1 cut(s) | 102 |
| AoxI | GGCC | 3 cut(s) | 18, 454, 888 |
| ApaLI | GTGCAC | 1 cut(s) | 1155 |
| ApeKI | GCWGC | 2 cut(s) | 475, 1192 |
| ApoI | RAATTY | 1 cut(s) | 660 |
| AseI | ATTAAT | 1 cut(s) | 908 |
| Asp718I | GGTACC | 1 cut(s) | 688 |
| AspLEI | GCGC | 3 cut(s) | 62, 103, 175 |
| AspS9I | GGNCC | 1 cut(s) | 367 |
| AsuC2I | CCSGG | 1 cut(s) | 458 |
| AsuHPI | GGTGA | 1 cut(s) | 785 |
| AvaII | GGWCC | 1 cut(s) | 367 |
| BaeGI | GKGCMC | 2 cut(s) | 258, 1159 |
| BalI | TGGCCA | 1 cut(s) | 890 |
| BamHI | GGATCC | 2 cut(s) | 415, 1107 |
| BanI | GGYRCC | 1 cut(s) | 688 |
| Bbv12I | GWGCWC | 1 cut(s) | 1159 |
| BbvI | GCAGC | 2 cut(s) | 487, 1179 |
| BccI | CCATC | 1 cut(s) | 1053 |
| BciT130I | CCWGG | 3 cut(s) | 88, 117, 921 |
| BcnI | CCSGG | 1 cut(s) | 458 |
| BcoDI | GTCTC | 2 cut(s) | 217, 1002 |
| BfaI | CTAG | 6 cut(s) | 104, 330, 350, 357, 1149, 1166 |
| BfoI | RGCGCY | 1 cut(s) | 104 |
| BfuAI | ACCTGC | 1 cut(s) | 641 |
| BisI | GCNGC | 3 cut(s) | 176, 476, 1193 |
| BlsI | GCNGC | 3 cut(s) | 177, 477, 1194 |
| Bme1390I | CCNGG | 4 cut(s) | 88, 117, 458, 921 |
| Bme18I | GGWCC | 1 cut(s) | 367 |
| BmgT120I | GGNCC | 1 cut(s) | 367 |
| BmiI | GGNNCC | 3 cut(s) | 417, 690, 1109 |
| BmrFI | CCNGG | 4 cut(s) | 88, 117, 458, 921 |
| BmsI | GCATC | 1 cut(s) | 71 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 8, 40 |
| BpmI | CTGGAG | 3 cut(s) | 233, 311, 646 |
| BpuMI | CCSGG | 1 cut(s) | 458 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1088, 1119 |
| BsaJI | CCNNGG | 1 cut(s) | 87 |
| BsaWI | WCCGGW | 1 cut(s) | 961 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 284, 314 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 93, 376, 897, 1011, 1151 |
| Bse1I | ACTGG | 2 cut(s) | 294, 625 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1088, 1119 |
| BseAI | TCCGGA | 1 cut(s) | 961 |
| BseBI | CCWGG | 3 cut(s) | 88, 117, 921 |
| BseDI | CCNNGG | 1 cut(s) | 87 |
| BseGI | GGATG | 1 cut(s) | 141 |
| BseJI | GATNNNNATC | 2 cut(s) | 1088, 1119 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 93, 376, 897, 1011, 1151 |
| BseMII | CTCAG | 5 cut(s) | 183, 495, 950, 998, 1164 |
| BseNI | ACTGG | 2 cut(s) | 294, 625 |
| BseRI | GAGGAG | 3 cut(s) | 331, 1030, 1134 |
| BseSI | GKGCMC | 2 cut(s) | 258, 1159 |
| BseXI | GCAGC | 2 cut(s) | 487, 1179 |
| BsgI | GTGCAG | 1 cut(s) | 777 |
| Bsh1236I | CGCG | 2 cut(s) | 175, 517 |
| BshFI | GGCC | 3 cut(s) | 20, 456, 890 |
| BshNI | GGYRCC | 1 cut(s) | 688 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1159 |
| BsiSI | CCGG | 2 cut(s) | 457, 962 |
| BslFI | GGGAC | 1 cut(s) | 1091 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 93, 376, 897, 1011, 1151 |
| BsmAI | GTCTC | 2 cut(s) | 217, 1002 |
| BsmBI | CGTCTC | 1 cut(s) | 1002 |
| BsmFI | GGGAC | 1 cut(s) | 1091 |
| BsnI | GGCC | 3 cut(s) | 20, 456, 890 |
| Bsp1286I | GDGCHC | 2 cut(s) | 258, 1159 |
| Bsp13I | TCCGGA | 1 cut(s) | 961 |
| Bsp1407I | TGTACA | 1 cut(s) | 383 |
| Bsp143I | GATC | 7 cut(s) | 206, 267, 415, 739, 859, 1107, 1183 |
| BspACI | CCGC | 2 cut(s) | 175, 517 |
| BspANI | GGCC | 3 cut(s) | 20, 456, 890 |
| BspCNI | CTCAG | 5 cut(s) | 182, 496, 949, 997, 1165 |
| BspEI | TCCGGA | 1 cut(s) | 961 |
| BspFNI | CGCG | 2 cut(s) | 175, 517 |
| BspLI | GGNNCC | 3 cut(s) | 417, 690, 1109 |
| BspMI | ACCTGC | 1 cut(s) | 641 |
| BspPI | GGATC | 8 cut(s) | 214, 262, 410, 423, 867, 1102, 1115, 1178 |
| BspQI | GCTCTTC | 1 cut(s) | 340 |
| BspT107I | GGYRCC | 1 cut(s) | 688 |
| BsrGI | TGTACA | 1 cut(s) | 383 |
| BsrI | ACTGG | 2 cut(s) | 294, 625 |
| BssECI | CCNNGG | 1 cut(s) | 87 |
| BssMI | GATC | 7 cut(s) | 206, 267, 415, 739, 859, 1107, 1183 |
| Bst2UI | CCWGG | 3 cut(s) | 88, 117, 921 |
| Bst4CI | ACNGT | 3 cut(s) | 202, 374, 688 |
| Bst6I | CTCTTC | 2 cut(s) | 340, 777 |
| BstAUI | TGTACA | 1 cut(s) | 383 |
| BstC8I | GCNNGC | 3 cut(s) | 22, 981, 1197 |
| BstDEI | CTNAG | 5 cut(s) | 169, 504, 936, 984, 1173 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 91 |
| BstF5I | GGATG | 1 cut(s) | 141 |
| BstFNI | CGCG | 2 cut(s) | 175, 517 |
| BstH2I | RGCGCY | 1 cut(s) | 104 |
| BstHHI | GCGC | 3 cut(s) | 62, 103, 175 |
| BstKTI | GATC | 7 cut(s) | 209, 270, 418, 742, 862, 1110, 1186 |
| BstMAI | GTCTC | 2 cut(s) | 217, 1002 |
| BstMBI | GATC | 7 cut(s) | 206, 267, 415, 739, 859, 1107, 1183 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 887 |
| BstNI | CCWGG | 3 cut(s) | 88, 117, 921 |
| BstNSI | RCATGY | 3 cut(s) | 182, 983, 1199 |
| BstSCI | CCNGG | 4 cut(s) | 86, 115, 456, 919 |
| BstSLI | GKGCMC | 2 cut(s) | 258, 1159 |
| BstUI | CGCG | 2 cut(s) | 175, 517 |
| BstV1I | GCAGC | 2 cut(s) | 487, 1179 |
| BstX2I | RGATCY | 5 cut(s) | 206, 267, 415, 859, 1107 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 559 |
| BstYI | RGATCY | 5 cut(s) | 206, 267, 415, 859, 1107 |
| BsuRI | GGCC | 3 cut(s) | 20, 456, 890 |
| BtgZI | GCGATG | 2 cut(s) | 896, 1072 |
| BtsCI | GGATG | 1 cut(s) | 141 |
| BtsI | GCAGTG | 1 cut(s) | 406 |
| BtsIMutI | CAGTG | 1 cut(s) | 406 |
| BveI | ACCTGC | 1 cut(s) | 641 |
| Cac8I | GCNNGC | 3 cut(s) | 22, 981, 1197 |
| CfoI | GCGC | 3 cut(s) | 62, 103, 175 |
| Cfr13I | GGNCC | 1 cut(s) | 367 |
| Csp6I | GTAC | 9 cut(s) | 198, 301, 360, 384, 483, 538, 689, 825, 993 |
| CviAII | CATG | 8 cut(s) | 179, 471, 530, 541, 557, 980, 1011, 1196 |
| CviQI | GTAC | 9 cut(s) | 198, 301, 360, 384, 483, 538, 689, 825, 993 |
| DdeI | CTNAG | 5 cut(s) | 169, 504, 936, 984, 1173 |
| DpnI | GATC | 7 cut(s) | 208, 269, 417, 741, 861, 1109, 1185 |
| DpnII | GATC | 7 cut(s) | 206, 267, 415, 739, 859, 1107, 1183 |
| EaeI | YGGCCR | 1 cut(s) | 888 |
| Eam1104I | CTCTTC | 2 cut(s) | 340, 777 |
| EarI | CTCTTC | 2 cut(s) | 340, 777 |
| Eco32I | GATATC | 1 cut(s) | 1090 |
| Eco47I | GGWCC | 1 cut(s) | 367 |
| Eco47III | AGCGCT | 1 cut(s) | 102 |
| Eco57I | CTGAAG | 2 cut(s) | 449, 614 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 91 |
| EcoRII | CCWGG | 3 cut(s) | 86, 115, 919 |
| EcoRV | GATATC | 1 cut(s) | 1090 |
| EcoT22I | ATGCAT | 1 cut(s) | 1201 |
| Esp3I | CGTCTC | 1 cut(s) | 1002 |
| FaeI | CATG | 8 cut(s) | 182, 474, 533, 544, 560, 983, 1014, 1199 |
| FaqI | GGGAC | 1 cut(s) | 1091 |
| FatI | CATG | 8 cut(s) | 178, 470, 529, 540, 556, 979, 1010, 1195 |
| FauI | CCCGC | 1 cut(s) | 510 |
| Fnu4HI | GCNGC | 3 cut(s) | 176, 476, 1193 |
| FokI | GGATG | 1 cut(s) | 148 |
| Fsp4HI | GCNGC | 3 cut(s) | 176, 476, 1193 |
| FspBI | CTAG | 6 cut(s) | 104, 330, 350, 357, 1149, 1166 |
| FspI | TGCGCA | 1 cut(s) | 61 |
| GlaI | GCGC | 3 cut(s) | 61, 102, 174 |
| GluI | GCNGC | 3 cut(s) | 176, 476, 1193 |
| GsuI | CTGGAG | 3 cut(s) | 233, 311, 646 |
| HaeII | RGCGCY | 1 cut(s) | 104 |
| HaeIII | GGCC | 3 cut(s) | 20, 456, 890 |
| HapII | CCGG | 2 cut(s) | 457, 962 |
| HhaI | GCGC | 3 cut(s) | 62, 103, 175 |
| Hin1II | CATG | 8 cut(s) | 182, 474, 533, 544, 560, 983, 1014, 1199 |
| Hin6I | GCGC | 3 cut(s) | 60, 101, 173 |
| HinP1I | GCGC | 3 cut(s) | 60, 101, 173 |
| HincII | GTYRAC | 1 cut(s) | 618 |
| HindII | GTYRAC | 1 cut(s) | 618 |
| HindIII | AAGCTT | 2 cut(s) | 602, 948 |
| HinfI | GANTC | 4 cut(s) | 52, 110, 916, 1115 |
| HpaI | GTTAAC | 1 cut(s) | 618 |
| HpaII | CCGG | 2 cut(s) | 457, 962 |
| HphI | GGTGA | 1 cut(s) | 785 |
| Hpy166II | GTNNAC | 5 cut(s) | 154, 184, 618, 825, 1157 |
| Hpy188I | TCNGA | 6 cut(s) | 367, 420, 594, 831, 915, 1125 |
| Hpy188III | TCNNGA | 6 cut(s) | 41, 66, 160, 212, 962, 1093 |
| Hpy8I | GTNNAC | 5 cut(s) | 154, 184, 618, 825, 1157 |
| Hpy99I | CGWCG | 2 cut(s) | 308, 367 |
| HpyAV | CCTTC | 3 cut(s) | 589, 1015, 1143 |
| HpyCH4III | ACNGT | 3 cut(s) | 202, 374, 688 |
| HpyCH4IV | ACGT | 5 cut(s) | 186, 303, 362, 481, 995 |
| HpyCH4V | TGCA | 7 cut(s) | 404, 578, 758, 979, 1157, 1195, 1199 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 887 |
| HpyF3I | CTNAG | 5 cut(s) | 169, 504, 936, 984, 1173 |
| HpySE526I | ACGT | 5 cut(s) | 186, 303, 362, 481, 995 |
| Hsp92II | CATG | 8 cut(s) | 182, 474, 533, 544, 560, 983, 1014, 1199 |
| HspAI | GCGC | 3 cut(s) | 60, 101, 173 |
| Kpn2I | TCCGGA | 1 cut(s) | 961 |
| KpnI | GGTACC | 1 cut(s) | 692 |
| KspAI | GTTAAC | 1 cut(s) | 618 |
| Kzo9I | GATC | 7 cut(s) | 206, 267, 415, 739, 859, 1107, 1183 |
| LguI | GCTCTTC | 1 cut(s) | 340 |
| LmnI | GCTCC | 4 cut(s) | 29, 358, 460, 647 |
| Lsp1109I | GCAGC | 2 cut(s) | 487, 1179 |
| LweI | GCATC | 1 cut(s) | 71 |
| MaeI | CTAG | 6 cut(s) | 104, 330, 350, 357, 1149, 1166 |
| MaeII | ACGT | 5 cut(s) | 186, 303, 362, 481, 995 |
| MaeIII | GTNAC | 1 cut(s) | 1168 |
| MalI | GATC | 7 cut(s) | 208, 269, 417, 741, 861, 1109, 1185 |
| MboI | GATC | 7 cut(s) | 206, 267, 415, 739, 859, 1107, 1183 |
| MboII | GAAGA | 4 cut(s) | 16, 327, 794, 1128 |
| MfeI | CAATTG | 1 cut(s) | 46 |
| MflI | RGATCY | 5 cut(s) | 206, 267, 415, 859, 1107 |
| MhlI | GDGCHC | 2 cut(s) | 258, 1159 |
| MlsI | TGGCCA | 1 cut(s) | 890 |
| MluCI | AATT | 8 cut(s) | 46, 163, 441, 660, 694, 706, 909, 930 |
| MluNI | TGGCCA | 1 cut(s) | 890 |
| MlyI | GAGTC | 2 cut(s) | 61, 119 |
| MmeI | TCCRAC | 1 cut(s) | 345 |
| Mox20I | TGGCCA | 1 cut(s) | 890 |
| Mph1103I | ATGCAT | 1 cut(s) | 1201 |
| MroI | TCCGGA | 1 cut(s) | 961 |
| MscI | TGGCCA | 1 cut(s) | 890 |
| MseI | TTAA | 6 cut(s) | 261, 444, 617, 873, 908, 929 |
| MslI | CAYNNNNRTG | 1 cut(s) | 557 |
| Msp20I | TGGCCA | 1 cut(s) | 890 |
| MspI | CCGG | 2 cut(s) | 457, 962 |
| MspR9I | CCNGG | 4 cut(s) | 88, 117, 458, 921 |
| MunI | CAATTG | 1 cut(s) | 46 |
| MvaI | CCWGG | 3 cut(s) | 88, 117, 921 |
| MvnI | CGCG | 2 cut(s) | 175, 517 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 887 |
| NciI | CCSGG | 1 cut(s) | 458 |
| NdeII | GATC | 7 cut(s) | 206, 267, 415, 739, 859, 1107, 1183 |
| NlaIII | CATG | 8 cut(s) | 182, 474, 533, 544, 560, 983, 1014, 1199 |
| NlaIV | GGNNCC | 3 cut(s) | 417, 690, 1109 |
| NmuCI | GTSAC | 1 cut(s) | 1168 |
| NsbI | TGCGCA | 1 cut(s) | 61 |
| NsiI | ATGCAT | 1 cut(s) | 1201 |
| NspI | RCATGY | 3 cut(s) | 182, 983, 1199 |
| OliI | CACNNNNGTG | 1 cut(s) | 557 |
| PaeI | GCATGC | 2 cut(s) | 983, 1199 |
| PciSI | GCTCTTC | 1 cut(s) | 340 |
| PfeI | GAWTC | 2 cut(s) | 916, 1115 |
| PkrI | GCNGC | 3 cut(s) | 177, 477, 1194 |
| PleI | GAGTC | 2 cut(s) | 60, 118 |
| PpsI | GAGTC | 2 cut(s) | 60, 118 |
| PshBI | ATTAAT | 1 cut(s) | 908 |
| Psp6I | CCWGG | 3 cut(s) | 86, 115, 919 |
| PspGI | CCWGG | 3 cut(s) | 86, 115, 919 |
| PspN4I | GGNNCC | 3 cut(s) | 417, 690, 1109 |
| PspPI | GGNCC | 1 cut(s) | 367 |
| PsuI | RGATCY | 5 cut(s) | 206, 267, 415, 859, 1107 |
| RsaI | GTAC | 9 cut(s) | 199, 302, 361, 385, 484, 539, 690, 826, 994 |
| RsaNI | GTAC | 9 cut(s) | 198, 301, 360, 384, 483, 538, 689, 825, 993 |
| RseI | CAYNNNNRTG | 1 cut(s) | 557 |
| SapI | GCTCTTC | 1 cut(s) | 340 |
| SaqAI | TTAA | 6 cut(s) | 261, 444, 617, 873, 908, 929 |
| SatI | GCNGC | 3 cut(s) | 176, 476, 1193 |
| Sau3AI | GATC | 7 cut(s) | 206, 267, 415, 739, 859, 1107, 1183 |
| Sau96I | GGNCC | 1 cut(s) | 367 |
| SchI | GAGTC | 2 cut(s) | 61, 119 |
| ScrFI | CCNGG | 4 cut(s) | 88, 117, 458, 921 |
| SduI | GDGCHC | 2 cut(s) | 258, 1159 |
| SfaNI | GCATC | 1 cut(s) | 71 |
| SinI | GGWCC | 1 cut(s) | 367 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 557 |
| SphI | GCATGC | 2 cut(s) | 983, 1199 |
| Sse9I | AATT | 8 cut(s) | 46, 163, 441, 660, 694, 706, 909, 930 |
| SsiI | CCGC | 2 cut(s) | 175, 517 |
| SspMI | CTAG | 6 cut(s) | 104, 330, 350, 357, 1149, 1166 |
| StyD4I | CCNGG | 4 cut(s) | 86, 115, 456, 919 |
| TaaI | ACNGT | 3 cut(s) | 202, 374, 688 |
| TaiI | ACGT | 5 cut(s) | 189, 306, 365, 484, 998 |
| TaqI | TCGA | 1 cut(s) | 522 |
| TasI | AATT | 8 cut(s) | 46, 163, 441, 660, 694, 706, 909, 930 |
| TatI | WGTACW | 2 cut(s) | 383, 824 |
| TauI | GCSGC | 1 cut(s) | 178 |
| TfiI | GAWTC | 2 cut(s) | 916, 1115 |
| Tru1I | TTAA | 6 cut(s) | 261, 444, 617, 873, 908, 929 |
| Tru9I | TTAA | 6 cut(s) | 261, 444, 617, 873, 908, 929 |
| TscAI | CASTG | 1 cut(s) | 406 |
| TseFI | GTSAC | 1 cut(s) | 1168 |
| TseI | GCWGC | 2 cut(s) | 475, 1192 |
| Tsp45I | GTSAC | 1 cut(s) | 1168 |
| TspDTI | ATGAA | 4 cut(s) | 17, 152, 719, 1107 |
| TspGWI | ACGGA | 2 cut(s) | 296, 794 |
| TspRI | CASTG | 1 cut(s) | 406 |
| VneI | GTGCAC | 1 cut(s) | 1155 |
| VpaK11BI | GGWCC | 1 cut(s) | 367 |
| VspI | ATTAAT | 1 cut(s) | 908 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 91 |
| XapI | RAATTY | 1 cut(s) | 660 |
| XceI | RCATGY | 3 cut(s) | 182, 983, 1199 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 37 |
| XspI | CTAG | 6 cut(s) | 104, 330, 350, 357, 1149, 1166 |
| Zsp2I | ATGCAT | 1 cut(s) | 1201 |