ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 36 - 117 | 2.3e-16 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 331 |
| AflII | CTTAAG | 1 cut(s) | 272 |
| AgsI | TTSAA | 2 cut(s) | 302, 374 |
| AjnI | CCWGG | 1 cut(s) | 379 |
| AluBI | AGCT | 2 cut(s) | 262, 355 |
| AluI | AGCT | 2 cut(s) | 262, 355 |
| Alw26I | GTCTC | 1 cut(s) | 169 |
| ApeKI | GCWGC | 3 cut(s) | 239, 259, 262 |
| BauI | CACGAG | 1 cut(s) | 234 |
| BbvI | GCAGC | 3 cut(s) | 249, 251, 271 |
| BccI | CCATC | 2 cut(s) | 299, 331 |
| BceAI | ACGGC | 1 cut(s) | 123 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 228, 238, 262, 272 |
| BciT130I | CCWGG | 1 cut(s) | 381 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BcoDI | GTCTC | 1 cut(s) | 169 |
| BfrI | CTTAAG | 1 cut(s) | 272 |
| BisI | GCNGC | 3 cut(s) | 240, 260, 263 |
| BlpI | GCTNAGC | 1 cut(s) | 356 |
| BlsI | GCNGC | 3 cut(s) | 241, 261, 264 |
| Bme1390I | CCNGG | 1 cut(s) | 381 |
| BmrFI | CCNGG | 1 cut(s) | 381 |
| BmrI | ACTGGG | 1 cut(s) | 261 |
| BmsI | GCATC | 2 cut(s) | 90, 246 |
| BmuI | ACTGGG | 1 cut(s) | 261 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 356 |
| BpuEI | CTTGAG | 1 cut(s) | 470 |
| BsaJI | CCNNGG | 1 cut(s) | 379 |
| Bse1I | ACTGG | 1 cut(s) | 267 |
| BseBI | CCWGG | 1 cut(s) | 381 |
| BseDI | CCNNGG | 1 cut(s) | 379 |
| BseMII | CTCAG | 1 cut(s) | 347 |
| BseNI | ACTGG | 1 cut(s) | 267 |
| BseXI | GCAGC | 3 cut(s) | 249, 251, 271 |
| BsgI | GTGCAG | 1 cut(s) | 258 |
| BslFI | GGGAC | 1 cut(s) | 305 |
| BsmAI | GTCTC | 1 cut(s) | 169 |
| BsmFI | GGGAC | 1 cut(s) | 305 |
| Bsp143I | GATC | 1 cut(s) | 145 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 356 |
| BspCNI | CTCAG | 1 cut(s) | 348 |
| BspTI | CTTAAG | 1 cut(s) | 272 |
| BsrI | ACTGG | 1 cut(s) | 267 |
| BssECI | CCNNGG | 1 cut(s) | 379 |
| BssMI | GATC | 1 cut(s) | 145 |
| BssSI | CACGAG | 1 cut(s) | 234 |
| Bst2BI | CACGAG | 1 cut(s) | 234 |
| Bst2UI | CCWGG | 1 cut(s) | 381 |
| Bst6I | CTCTTC | 1 cut(s) | 124 |
| BstAFI | CTTAAG | 1 cut(s) | 272 |
| BstC8I | GCNNGC | 1 cut(s) | 201 |
| BstDEI | CTNAG | 1 cut(s) | 356 |
| BstKTI | GATC | 1 cut(s) | 148 |
| BstMAI | GTCTC | 1 cut(s) | 169 |
| BstMBI | GATC | 1 cut(s) | 145 |
| BstNI | CCWGG | 1 cut(s) | 381 |
| BstNSI | RCATGY | 1 cut(s) | 203 |
| BstSCI | CCNGG | 1 cut(s) | 379 |
| BstV1I | GCAGC | 3 cut(s) | 249, 251, 271 |
| Cac8I | GCNNGC | 1 cut(s) | 201 |
| Csp6I | GTAC | 1 cut(s) | 330 |
| CviAII | CATG | 3 cut(s) | 44, 200, 204 |
| CviJI | RGCY | 5 cut(s) | 110, 242, 262, 355, 476 |
| CviKI_1 | RGCY | 5 cut(s) | 110, 242, 262, 355, 476 |
| CviQI | GTAC | 1 cut(s) | 330 |
| DdeI | CTNAG | 1 cut(s) | 356 |
| DpnI | GATC | 1 cut(s) | 147 |
| DpnII | GATC | 1 cut(s) | 145 |
| Eam1104I | CTCTTC | 1 cut(s) | 124 |
| EarI | CTCTTC | 1 cut(s) | 124 |
| EcoRII | CCWGG | 1 cut(s) | 379 |
| EcoT22I | ATGCAT | 2 cut(s) | 105, 205 |
| FaeI | CATG | 3 cut(s) | 47, 203, 207 |
| FaqI | GGGAC | 1 cut(s) | 305 |
| FatI | CATG | 3 cut(s) | 43, 199, 203 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| Fnu4HI | GCNGC | 3 cut(s) | 240, 260, 263 |
| Fsp4HI | GCNGC | 3 cut(s) | 240, 260, 263 |
| GluI | GCNGC | 3 cut(s) | 240, 260, 263 |
| Hin1II | CATG | 3 cut(s) | 47, 203, 207 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HinfI | GANTC | 2 cut(s) | 177, 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 394 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 416 |
| Hpy188III | TCNNGA | 4 cut(s) | 61, 166, 449, 460 |
| Hpy8I | GTNNAC | 1 cut(s) | 394 |
| HpyCH4V | TGCA | 5 cut(s) | 103, 199, 203, 239, 259 |
| HpyF3I | CTNAG | 1 cut(s) | 356 |
| Hsp92II | CATG | 3 cut(s) | 47, 203, 207 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 1 cut(s) | 145 |
| LpnPI | CCDG | 5 cut(s) | 151, 280, 366, 393, 423 |
| Lsp1109I | GCAGC | 3 cut(s) | 249, 251, 271 |
| LweI | GCATC | 2 cut(s) | 90, 246 |
| MalI | GATC | 1 cut(s) | 147 |
| MboI | GATC | 1 cut(s) | 145 |
| MboII | GAAGA | 4 cut(s) | 105, 111, 314, 435 |
| MluCI | AATT | 4 cut(s) | 91, 149, 194, 345 |
| MlyI | GAGTC | 2 cut(s) | 171, 389 |
| MnlI | CCTC | 2 cut(s) | 127, 410 |
| Mph1103I | ATGCAT | 2 cut(s) | 105, 205 |
| MseI | TTAA | 3 cut(s) | 215, 273, 344 |
| MspA1I | CMGCKG | 1 cut(s) | 262 |
| MspCI | CTTAAG | 1 cut(s) | 272 |
| MspR9I | CCNGG | 1 cut(s) | 381 |
| MvaI | CCWGG | 1 cut(s) | 381 |
| NdeII | GATC | 1 cut(s) | 145 |
| NlaIII | CATG | 3 cut(s) | 47, 203, 207 |
| NsiI | ATGCAT | 2 cut(s) | 105, 205 |
| NspI | RCATGY | 1 cut(s) | 203 |
| PaeI | GCATGC | 1 cut(s) | 203 |
| PkrI | GCNGC | 3 cut(s) | 241, 261, 264 |
| PleI | GAGTC | 2 cut(s) | 171, 389 |
| PpsI | GAGTC | 2 cut(s) | 171, 389 |
| Psp6I | CCWGG | 1 cut(s) | 379 |
| PspGI | CCWGG | 1 cut(s) | 379 |
| PvuII | CAGCTG | 1 cut(s) | 262 |
| RsaI | GTAC | 1 cut(s) | 331 |
| RsaNI | GTAC | 1 cut(s) | 330 |
| SaqAI | TTAA | 3 cut(s) | 215, 273, 344 |
| SatI | GCNGC | 3 cut(s) | 240, 260, 263 |
| Sau3AI | GATC | 1 cut(s) | 145 |
| SchI | GAGTC | 2 cut(s) | 171, 389 |
| ScrFI | CCNGG | 1 cut(s) | 381 |
| SetI | ASST | 6 cut(s) | 187, 264, 335, 357, 421, 442 |
| SfaNI | GCATC | 2 cut(s) | 90, 246 |
| SmlI | CTYRAG | 2 cut(s) | 272, 449 |
| SmoI | CTYRAG | 2 cut(s) | 272, 449 |
| SphI | GCATGC | 1 cut(s) | 203 |
| Sse9I | AATT | 4 cut(s) | 91, 149, 194, 345 |
| StyD4I | CCNGG | 1 cut(s) | 379 |
| TaqI | TCGA | 2 cut(s) | 248, 426 |
| TasI | AATT | 4 cut(s) | 91, 149, 194, 345 |
| Tru1I | TTAA | 3 cut(s) | 215, 273, 344 |
| Tru9I | TTAA | 3 cut(s) | 215, 273, 344 |
| TseI | GCWGC | 3 cut(s) | 239, 259, 262 |
| TspDTI | ATGAA | 2 cut(s) | 310, 314 |
| Vha464I | CTTAAG | 1 cut(s) | 272 |
| XceI | RCATGY | 1 cut(s) | 203 |
| Zsp2I | ATGCAT | 2 cut(s) | 105, 205 |