ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 40 - 133 | 3e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 84 |
| AclWI | GGATC | 2 cut(s) | 389, 447 |
| AcoI | YGGCCR | 1 cut(s) | 48 |
| AcsI | RAATTY | 2 cut(s) | 21, 499 |
| AcyI | GRCGYC | 1 cut(s) | 408 |
| AfaI | GTAC | 1 cut(s) | 340 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 84, 101, 528 |
| AflIII | ACRYGT | 1 cut(s) | 346 |
| AgsI | TTSAA | 6 cut(s) | 241, 287, 308, 314, 369, 510 |
| AhlI | ACTAGT | 1 cut(s) | 89 |
| AluBI | AGCT | 3 cut(s) | 150, 464, 534 |
| AluI | AGCT | 3 cut(s) | 150, 464, 534 |
| Alw26I | GTCTC | 2 cut(s) | 399, 489 |
| AlwI | GGATC | 2 cut(s) | 389, 447 |
| AoxI | GGCC | 1 cut(s) | 48 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| ApoI | RAATTY | 2 cut(s) | 21, 499 |
| AseI | ATTAAT | 1 cut(s) | 117 |
| AsuC2I | CCSGG | 1 cut(s) | 523 |
| AsuHPI | GGTGA | 2 cut(s) | 76, 346 |
| BalI | TGGCCA | 1 cut(s) | 50 |
| BanII | GRGCYC | 1 cut(s) | 76 |
| BccI | CCATC | 2 cut(s) | 86, 347 |
| BcnI | CCSGG | 1 cut(s) | 523 |
| BcoDI | GTCTC | 2 cut(s) | 399, 489 |
| BcuI | ACTAGT | 1 cut(s) | 89 |
| BfaI | CTAG | 2 cut(s) | 59, 90 |
| BfmI | CTRYAG | 1 cut(s) | 394 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 1 cut(s) | 523 |
| BmiI | GGNNCC | 2 cut(s) | 75, 520 |
| BmrFI | CCNGG | 1 cut(s) | 523 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 58, 90 |
| BpmI | CTGGAG | 1 cut(s) | 174 |
| BpuMI | CCSGG | 1 cut(s) | 523 |
| BsaHI | GRCGYC | 1 cut(s) | 408 |
| BsaJI | CCNNGG | 1 cut(s) | 98 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 84, 101, 528 |
| BseDI | CCNNGG | 1 cut(s) | 98 |
| BseGI | GGATG | 3 cut(s) | 195, 394, 430 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 84, 101, 528 |
| BseRI | GAGGAG | 3 cut(s) | 17, 82, 417 |
| BshFI | GGCC | 1 cut(s) | 50 |
| BsiSI | CCGG | 1 cut(s) | 522 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 84, 101, 528 |
| BsmAI | GTCTC | 2 cut(s) | 399, 489 |
| BsmBI | CGTCTC | 1 cut(s) | 399 |
| BsnI | GGCC | 1 cut(s) | 50 |
| Bsp1286I | GDGCHC | 1 cut(s) | 76 |
| Bsp143I | GATC | 2 cut(s) | 381, 439 |
| BspANI | GGCC | 1 cut(s) | 50 |
| BspLI | GGNNCC | 2 cut(s) | 75, 520 |
| BspPI | GGATC | 2 cut(s) | 389, 447 |
| BssECI | CCNNGG | 1 cut(s) | 98 |
| BssMI | GATC | 2 cut(s) | 381, 439 |
| BssNI | GRCGYC | 1 cut(s) | 408 |
| Bst4CI | ACNGT | 2 cut(s) | 216, 395 |
| Bst6I | CTCTTC | 1 cut(s) | 394 |
| BstACI | GRCGYC | 1 cut(s) | 408 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 232 |
| BstC8I | GCNNGC | 1 cut(s) | 197 |
| BstDEI | CTNAG | 1 cut(s) | 259 |
| BstDSI | CCRYGG | 1 cut(s) | 98 |
| BstF5I | GGATG | 3 cut(s) | 195, 394, 430 |
| BstKTI | GATC | 2 cut(s) | 384, 442 |
| BstMAI | GTCTC | 2 cut(s) | 399, 489 |
| BstMBI | GATC | 2 cut(s) | 381, 439 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 205, 232, 262 |
| BstNSI | RCATGY | 2 cut(s) | 199, 350 |
| BstSCI | CCNGG | 1 cut(s) | 521 |
| BstSFI | CTRYAG | 1 cut(s) | 394 |
| BstX2I | RGATCY | 1 cut(s) | 381 |
| BstYI | RGATCY | 1 cut(s) | 381 |
| BsuRI | GGCC | 1 cut(s) | 50 |
| BtgI | CCRYGG | 1 cut(s) | 98 |
| BtsCI | GGATG | 3 cut(s) | 195, 394, 430 |
| Cac8I | GCNNGC | 1 cut(s) | 197 |
| CseI | GACGC | 1 cut(s) | 416 |
| Csp6I | GTAC | 1 cut(s) | 339 |
| CviAII | CATG | 4 cut(s) | 46, 196, 347, 467 |
| CviJI | RGCY | 8 cut(s) | 5, 50, 74, 109, 150, 256, 464, 534 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 50, 74, 109, 150, 256, 464, 534 |
| CviQI | GTAC | 1 cut(s) | 339 |
| DdeI | CTNAG | 1 cut(s) | 259 |
| DpnI | GATC | 2 cut(s) | 383, 441 |
| DpnII | GATC | 2 cut(s) | 381, 439 |
| EaeI | YGGCCR | 1 cut(s) | 48 |
| Eam1104I | CTCTTC | 1 cut(s) | 394 |
| EarI | CTCTTC | 1 cut(s) | 394 |
| Eco24I | GRGCYC | 1 cut(s) | 76 |
| EcoRI | GAATTC | 1 cut(s) | 21 |
| EcoT22I | ATGCAT | 1 cut(s) | 228 |
| EcoT38I | GRGCYC | 1 cut(s) | 76 |
| Esp3I | CGTCTC | 1 cut(s) | 399 |
| FaeI | CATG | 4 cut(s) | 49, 199, 350, 470 |
| FatI | CATG | 4 cut(s) | 45, 195, 346, 466 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 3 cut(s) | 202, 401, 437 |
| FriOI | GRGCYC | 1 cut(s) | 76 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 2 cut(s) | 59, 90 |
| GluI | GCNGC | 1 cut(s) | 6 |
| GsuI | CTGGAG | 1 cut(s) | 174 |
| HaeIII | GGCC | 1 cut(s) | 50 |
| HapII | CCGG | 1 cut(s) | 522 |
| HgaI | GACGC | 1 cut(s) | 416 |
| Hin1I | GRCGYC | 1 cut(s) | 408 |
| Hin1II | CATG | 4 cut(s) | 49, 199, 350, 470 |
| HpaII | CCGG | 1 cut(s) | 522 |
| HphI | GGTGA | 2 cut(s) | 76, 346 |
| Hpy166II | GTNNAC | 3 cut(s) | 87, 95, 328 |
| Hpy188I | TCNGA | 1 cut(s) | 424 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 153 |
| Hpy8I | GTNNAC | 3 cut(s) | 87, 95, 328 |
| HpyAV | CCTTC | 3 cut(s) | 99, 179, 372 |
| HpyCH4III | ACNGT | 2 cut(s) | 216, 395 |
| HpyCH4V | TGCA | 6 cut(s) | 195, 208, 226, 235, 281, 496 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 205, 232, 262 |
| HpyF3I | CTNAG | 1 cut(s) | 259 |
| Hsp92I | GRCGYC | 1 cut(s) | 408 |
| Hsp92II | CATG | 4 cut(s) | 49, 199, 350, 470 |
| Kzo9I | GATC | 2 cut(s) | 381, 439 |
| LmnI | GCTCC | 2 cut(s) | 79, 531 |
| LpnPI | CCDG | 5 cut(s) | 138, 251, 275, 424, 459 |
| MaeI | CTAG | 2 cut(s) | 59, 90 |
| MalI | GATC | 2 cut(s) | 383, 441 |
| MboI | GATC | 2 cut(s) | 381, 439 |
| MboII | GAAGA | 1 cut(s) | 411 |
| MflI | RGATCY | 1 cut(s) | 381 |
| MhlI | GDGCHC | 1 cut(s) | 76 |
| MlsI | TGGCCA | 1 cut(s) | 50 |
| MluCI | AATT | 7 cut(s) | 21, 114, 178, 236, 282, 303, 499 |
| MluNI | TGGCCA | 1 cut(s) | 50 |
| MnlI | CCTC | 7 cut(s) | 38, 55, 60, 63, 149, 395, 430 |
| Mox20I | TGGCCA | 1 cut(s) | 50 |
| Mph1103I | ATGCAT | 1 cut(s) | 228 |
| MscI | TGGCCA | 1 cut(s) | 50 |
| MseI | TTAA | 1 cut(s) | 117 |
| MslI | CAYNNNNRTG | 2 cut(s) | 351, 423 |
| Msp20I | TGGCCA | 1 cut(s) | 50 |
| MspI | CCGG | 1 cut(s) | 522 |
| MspR9I | CCNGG | 1 cut(s) | 523 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 205, 232, 262 |
| NciI | CCSGG | 1 cut(s) | 523 |
| NdeII | GATC | 2 cut(s) | 381, 439 |
| NlaIII | CATG | 4 cut(s) | 49, 199, 350, 470 |
| NlaIV | GGNNCC | 2 cut(s) | 75, 520 |
| NsiI | ATGCAT | 1 cut(s) | 228 |
| NspI | RCATGY | 2 cut(s) | 199, 350 |
| PaeI | GCATGC | 1 cut(s) | 199 |
| PciI | ACATGT | 1 cut(s) | 346 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 84 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PscI | ACATGT | 1 cut(s) | 346 |
| PshBI | ATTAAT | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 2 cut(s) | 75, 520 |
| PsuI | RGATCY | 1 cut(s) | 381 |
| RsaI | GTAC | 1 cut(s) | 340 |
| RsaNI | GTAC | 1 cut(s) | 339 |
| RseI | CAYNNNNRTG | 2 cut(s) | 351, 423 |
| SaqAI | TTAA | 1 cut(s) | 117 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 2 cut(s) | 381, 439 |
| ScrFI | CCNGG | 1 cut(s) | 523 |
| SduI | GDGCHC | 1 cut(s) | 76 |
| SetI | ASST | 7 cut(s) | 66, 152, 160, 205, 466, 478, 536 |
| SfcI | CTRYAG | 1 cut(s) | 394 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 351, 423 |
| SpeI | ACTAGT | 1 cut(s) | 89 |
| SphI | GCATGC | 1 cut(s) | 199 |
| Sse9I | AATT | 7 cut(s) | 21, 114, 178, 236, 282, 303, 499 |
| SspMI | CTAG | 2 cut(s) | 59, 90 |
| StyD4I | CCNGG | 1 cut(s) | 521 |
| TaaI | ACNGT | 2 cut(s) | 216, 395 |
| TasI | AATT | 7 cut(s) | 21, 114, 178, 236, 282, 303, 499 |
| TatI | WGTACW | 1 cut(s) | 338 |
| Tru1I | TTAA | 1 cut(s) | 117 |
| Tru9I | TTAA | 1 cut(s) | 117 |
| TseI | GCWGC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 2 cut(s) | 44, 198 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 84 |
| VspI | ATTAAT | 1 cut(s) | 117 |
| XapI | RAATTY | 2 cut(s) | 21, 499 |
| XbaI | TCTAGA | 1 cut(s) | 58 |
| XceI | RCATGY | 2 cut(s) | 199, 350 |
| XspI | CTAG | 2 cut(s) | 59, 90 |
| Zsp2I | ATGCAT | 1 cut(s) | 228 |