Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 71 - 141 | 8.7e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 87 |
| AcuI | CTGAAG | 2 cut(s) | 186, 303 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 119 |
| AgsI | TTSAA | 1 cut(s) | 154 |
| AleI | CACNNNNGTG | 1 cut(s) | 305 |
| AluBI | AGCT | 2 cut(s) | 149, 416 |
| AluI | AGCT | 2 cut(s) | 149, 416 |
| Alw26I | GTCTC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 2 cut(s) | 32, 413 |
| ApoI | RAATTY | 1 cut(s) | 87 |
| AsuHPI | GGTGA | 1 cut(s) | 145 |
| BanII | GRGCYC | 1 cut(s) | 112 |
| BbsI | GAAGAC | 1 cut(s) | 220 |
| BbvI | GCAGC | 2 cut(s) | 19, 425 |
| BccI | CCATC | 2 cut(s) | 137, 347 |
| BciVI | GTATCC | 1 cut(s) | 241 |
| BcoDI | GTCTC | 1 cut(s) | 189 |
| BfaI | CTAG | 1 cut(s) | 410 |
| BfuI | GTATCC | 1 cut(s) | 241 |
| BisI | GCNGC | 2 cut(s) | 33, 414 |
| BlsI | GCNGC | 2 cut(s) | 34, 415 |
| BmiI | GGNNCC | 1 cut(s) | 111 |
| BpiI | GAAGAC | 1 cut(s) | 220 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 97, 129 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 119 |
| Bse3DI | GCAATG | 1 cut(s) | 27 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseMI | GCAATG | 1 cut(s) | 27 |
| BseMII | CTCAG | 1 cut(s) | 232 |
| BseRI | GAGGAG | 1 cut(s) | 102 |
| BseXI | GCAGC | 2 cut(s) | 19, 425 |
| BsgI | GTGCAG | 1 cut(s) | 289 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 1 cut(s) | 112 |
| Bsp143I | GATC | 1 cut(s) | 13 |
| BspCNI | CTCAG | 1 cut(s) | 231 |
| BspLI | GGNNCC | 1 cut(s) | 111 |
| BsrDI | GCAATG | 1 cut(s) | 27 |
| BssMI | GATC | 1 cut(s) | 13 |
| Bst4CI | ACNGT | 1 cut(s) | 397 |
| Bst6I | CTCTTC | 1 cut(s) | 205 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 419 |
| BstDEI | CTNAG | 3 cut(s) | 17, 116, 218 |
| BstKTI | GATC | 1 cut(s) | 16 |
| BstMAI | GTCTC | 1 cut(s) | 189 |
| BstMBI | GATC | 1 cut(s) | 13 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 419 |
| BstNSI | RCATGY | 1 cut(s) | 98 |
| BstV1I | GCAGC | 2 cut(s) | 19, 425 |
| BstV2I | GAAGAC | 1 cut(s) | 220 |
| BsuI | GTATCC | 1 cut(s) | 241 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| CseI | GACGC | 1 cut(s) | 263 |
| CviAII | CATG | 4 cut(s) | 95, 158, 224, 419 |
| CviJI | RGCY | 6 cut(s) | 8, 110, 149, 319, 389, 416 |
| CviKI_1 | RGCY | 6 cut(s) | 8, 110, 149, 319, 389, 416 |
| DdeI | CTNAG | 3 cut(s) | 17, 116, 218 |
| DpnI | GATC | 1 cut(s) | 15 |
| DpnII | GATC | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 1 cut(s) | 205 |
| EarI | CTCTTC | 1 cut(s) | 205 |
| Eco24I | GRGCYC | 1 cut(s) | 112 |
| Eco57I | CTGAAG | 2 cut(s) | 186, 303 |
| EcoRI | GAATTC | 1 cut(s) | 87 |
| EcoT38I | GRGCYC | 1 cut(s) | 112 |
| FaeI | CATG | 4 cut(s) | 98, 161, 227, 422 |
| FaiI | YATR | 9 cut(s) | 96, 127, 159, 225, 293, 322, 324, 375, 420 |
| FatI | CATG | 4 cut(s) | 94, 157, 223, 418 |
| Fnu4HI | GCNGC | 2 cut(s) | 33, 414 |
| FriOI | GRGCYC | 1 cut(s) | 112 |
| Fsp4HI | GCNGC | 2 cut(s) | 33, 414 |
| FspBI | CTAG | 1 cut(s) | 410 |
| GluI | GCNGC | 2 cut(s) | 33, 414 |
| HgaI | GACGC | 1 cut(s) | 263 |
| Hin1II | CATG | 4 cut(s) | 98, 161, 227, 422 |
| HinfI | GANTC | 2 cut(s) | 58, 197 |
| HphI | GGTGA | 1 cut(s) | 145 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| HpyAV | CCTTC | 3 cut(s) | 124, 162, 340 |
| HpyCH4III | ACNGT | 1 cut(s) | 397 |
| HpyCH4IV | ACGT | 1 cut(s) | 330 |
| HpyCH4V | TGCA | 3 cut(s) | 35, 270, 401 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 419 |
| HpyF3I | CTNAG | 3 cut(s) | 17, 116, 218 |
| HpySE526I | ACGT | 1 cut(s) | 330 |
| Hsp92II | CATG | 4 cut(s) | 98, 161, 227, 422 |
| Kzo9I | GATC | 1 cut(s) | 13 |
| LmnI | GCTCC | 2 cut(s) | 115, 146 |
| Lsp1109I | GCAGC | 2 cut(s) | 19, 425 |
| MaeI | CTAG | 1 cut(s) | 410 |
| MaeII | ACGT | 1 cut(s) | 330 |
| MaeIII | GTNAC | 2 cut(s) | 160, 380 |
| MalI | GATC | 1 cut(s) | 15 |
| MboI | GATC | 1 cut(s) | 13 |
| MboII | GAAGA | 5 cut(s) | 192, 220, 223, 296, 362 |
| MhlI | GDGCHC | 1 cut(s) | 112 |
| MluCI | AATT | 1 cut(s) | 87 |
| MlyI | GAGTC | 1 cut(s) | 191 |
| MnlI | CCTC | 4 cut(s) | 99, 123, 167, 319 |
| MslI | CAYNNNNRTG | 1 cut(s) | 305 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 419 |
| NdeII | GATC | 1 cut(s) | 13 |
| NlaIII | CATG | 4 cut(s) | 98, 161, 227, 422 |
| NlaIV | GGNNCC | 1 cut(s) | 111 |
| NmuCI | GTSAC | 2 cut(s) | 160, 380 |
| NspI | RCATGY | 1 cut(s) | 98 |
| OliI | CACNNNNGTG | 1 cut(s) | 305 |
| PfeI | GAWTC | 1 cut(s) | 58 |
| PkrI | GCNGC | 2 cut(s) | 34, 415 |
| PleI | GAGTC | 1 cut(s) | 191 |
| PpsI | GAGTC | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 1 cut(s) | 111 |
| RseI | CAYNNNNRTG | 1 cut(s) | 305 |
| SatI | GCNGC | 2 cut(s) | 33, 414 |
| Sau3AI | GATC | 1 cut(s) | 13 |
| SchI | GAGTC | 1 cut(s) | 191 |
| SduI | GDGCHC | 1 cut(s) | 112 |
| SetI | ASST | 6 cut(s) | 135, 151, 178, 316, 333, 418 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 305 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SspI | AATATT | 1 cut(s) | 139 |
| SspMI | CTAG | 1 cut(s) | 410 |
| TaaI | ACNGT | 1 cut(s) | 397 |
| TaiI | ACGT | 1 cut(s) | 333 |
| TasI | AATT | 1 cut(s) | 87 |
| TfiI | GAWTC | 1 cut(s) | 58 |
| TscAI | CASTG | 1 cut(s) | 210 |
| TseFI | GTSAC | 2 cut(s) | 160, 380 |
| TseI | GCWGC | 2 cut(s) | 32, 413 |
| Tsp45I | GTSAC | 2 cut(s) | 160, 380 |
| TspDTI | ATGAA | 1 cut(s) | 359 |
| TspRI | CASTG | 1 cut(s) | 210 |
| XapI | RAATTY | 1 cut(s) | 87 |
| XceI | RCATGY | 1 cut(s) | 98 |
| XspI | CTAG | 1 cut(s) | 410 |