Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 81 - 202 | 3.6e-24 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 380 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 224 |
| AciI | CCGC | 1 cut(s) | 502 |
| AcvI | CACGTG | 1 cut(s) | 186 |
| AdeI | CACNNNGTG | 1 cut(s) | 224 |
| AfaI | GTAC | 2 cut(s) | 313, 669 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 224, 333 |
| AflIII | ACRYGT | 1 cut(s) | 185 |
| AgsI | TTSAA | 2 cut(s) | 469, 512 |
| AjnI | CCWGG | 2 cut(s) | 172, 660 |
| AluBI | AGCT | 2 cut(s) | 255, 447 |
| AluI | AGCT | 2 cut(s) | 255, 447 |
| Alw26I | GTCTC | 2 cut(s) | 355, 651 |
| AoxI | GGCC | 1 cut(s) | 132 |
| ApaI | GGGCCC | 1 cut(s) | 136 |
| ApeKI | GCWGC | 3 cut(s) | 122, 323, 380 |
| AseI | ATTAAT | 2 cut(s) | 21, 741 |
| AspS9I | GGNCC | 3 cut(s) | 61, 132, 133 |
| AsuC2I | CCSGG | 1 cut(s) | 569 |
| AsuHPI | GGTGA | 3 cut(s) | 401, 469, 593 |
| AvaII | GGWCC | 1 cut(s) | 61 |
| BaeGI | GKGCMC | 1 cut(s) | 136 |
| BanII | GRGCYC | 1 cut(s) | 136 |
| BbrPI | CACGTG | 1 cut(s) | 186 |
| BbsI | GAAGAC | 1 cut(s) | 185 |
| BbvCI | CCTCAGC | 1 cut(s) | 375 |
| BbvI | GCAGC | 3 cut(s) | 109, 310, 367 |
| BccI | CCATC | 2 cut(s) | 242, 269 |
| BciT130I | CCWGG | 2 cut(s) | 174, 662 |
| BciVI | GTATCC | 1 cut(s) | 404 |
| BclI | TGATCA | 2 cut(s) | 28, 265 |
| BcnI | CCSGG | 1 cut(s) | 569 |
| BcoDI | GTCTC | 2 cut(s) | 355, 651 |
| BfaI | CTAG | 5 cut(s) | 146, 222, 384, 609, 696 |
| BfuAI | ACCTGC | 1 cut(s) | 380 |
| BfuI | GTATCC | 1 cut(s) | 404 |
| BglII | AGATCT | 1 cut(s) | 488 |
| BisI | GCNGC | 3 cut(s) | 123, 324, 381 |
| BlsI | GCNGC | 3 cut(s) | 124, 325, 382 |
| Bme1390I | CCNGG | 3 cut(s) | 174, 569, 662 |
| Bme18I | GGWCC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 3 cut(s) | 61, 132, 133 |
| BmiI | GGNNCC | 2 cut(s) | 62, 134 |
| BmrFI | CCNGG | 3 cut(s) | 174, 569, 662 |
| BpiI | GAAGAC | 1 cut(s) | 185 |
| Bpu10I | CCTNAGC | 1 cut(s) | 375 |
| BpuEI | CTTGAG | 1 cut(s) | 218 |
| BpuMI | CCSGG | 1 cut(s) | 569 |
| BsaAI | YACGTR | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 1 cut(s) | 173 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 224, 333 |
| BseBI | CCWGG | 2 cut(s) | 174, 662 |
| BseDI | CCNNGG | 1 cut(s) | 173 |
| BseGI | GGATG | 3 cut(s) | 253, 280, 670 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 224, 333 |
| BseMII | CTCAG | 1 cut(s) | 366 |
| BseSI | GKGCMC | 1 cut(s) | 136 |
| BseXI | GCAGC | 3 cut(s) | 109, 310, 367 |
| BsgI | GTGCAG | 1 cut(s) | 108 |
| BshFI | GGCC | 1 cut(s) | 134 |
| BsiSI | CCGG | 1 cut(s) | 568 |
| BslFI | GGGAC | 1 cut(s) | 700 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 224, 333 |
| BsmAI | GTCTC | 2 cut(s) | 355, 651 |
| BsmFI | GGGAC | 1 cut(s) | 700 |
| BsmI | GAATGC | 1 cut(s) | 466 |
| BsnI | GGCC | 1 cut(s) | 134 |
| Bsp120I | GGGCCC | 1 cut(s) | 132 |
| Bsp1286I | GDGCHC | 1 cut(s) | 136 |
| Bsp143I | GATC | 3 cut(s) | 28, 265, 488 |
| BspACI | CCGC | 1 cut(s) | 502 |
| BspANI | GGCC | 1 cut(s) | 134 |
| BspCNI | CTCAG | 1 cut(s) | 367 |
| BspLI | GGNNCC | 2 cut(s) | 62, 134 |
| BspMI | ACCTGC | 1 cut(s) | 380 |
| BspQI | GCTCTTC | 1 cut(s) | 366 |
| BssECI | CCNNGG | 1 cut(s) | 173 |
| BssMI | GATC | 3 cut(s) | 28, 265, 488 |
| Bst2UI | CCWGG | 2 cut(s) | 174, 662 |
| Bst4CI | ACNGT | 1 cut(s) | 260 |
| Bst6I | CTCTTC | 2 cut(s) | 358, 366 |
| BstBAI | YACGTR | 1 cut(s) | 186 |
| BstC8I | GCNNGC | 2 cut(s) | 597, 729 |
| BstDEI | CTNAG | 2 cut(s) | 204, 375 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 331 |
| BstF5I | GGATG | 3 cut(s) | 253, 280, 670 |
| BstKTI | GATC | 3 cut(s) | 31, 268, 491 |
| BstMAI | GTCTC | 2 cut(s) | 355, 651 |
| BstMBI | GATC | 3 cut(s) | 28, 265, 488 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 119, 131, 329, 380, 386, 605 |
| BstNI | CCWGG | 2 cut(s) | 174, 662 |
| BstNSI | RCATGY | 2 cut(s) | 122, 731 |
| BstSCI | CCNGG | 3 cut(s) | 172, 567, 660 |
| BstSLI | GKGCMC | 1 cut(s) | 136 |
| BstV1I | GCAGC | 3 cut(s) | 109, 310, 367 |
| BstV2I | GAAGAC | 1 cut(s) | 185 |
| BstX2I | RGATCY | 1 cut(s) | 488 |
| BstYI | RGATCY | 1 cut(s) | 488 |
| BsuI | GTATCC | 1 cut(s) | 404 |
| BsuRI | GGCC | 1 cut(s) | 134 |
| BtsCI | GGATG | 3 cut(s) | 253, 280, 670 |
| BveI | ACCTGC | 1 cut(s) | 380 |
| Cac8I | GCNNGC | 2 cut(s) | 597, 729 |
| Cfr13I | GGNCC | 3 cut(s) | 61, 132, 133 |
| Csp6I | GTAC | 2 cut(s) | 312, 668 |
| CviAII | CATG | 3 cut(s) | 119, 347, 728 |
| CviQI | GTAC | 2 cut(s) | 312, 668 |
| DdeI | CTNAG | 2 cut(s) | 204, 375 |
| DpnI | GATC | 3 cut(s) | 30, 267, 490 |
| DpnII | GATC | 3 cut(s) | 28, 265, 488 |
| DraIII | CACNNNGTG | 1 cut(s) | 224 |
| Eam1104I | CTCTTC | 2 cut(s) | 358, 366 |
| EarI | CTCTTC | 2 cut(s) | 358, 366 |
| EciI | GGCGGA | 1 cut(s) | 517 |
| Eco24I | GRGCYC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 1 cut(s) | 61 |
| Eco72I | CACGTG | 1 cut(s) | 186 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 331 |
| EcoO109I | RGGNCCY | 1 cut(s) | 61 |
| EcoRII | CCWGG | 2 cut(s) | 172, 660 |
| EcoT22I | ATGCAT | 1 cut(s) | 729 |
| EcoT38I | GRGCYC | 1 cut(s) | 136 |
| FaeI | CATG | 3 cut(s) | 122, 350, 731 |
| FaqI | GGGAC | 1 cut(s) | 700 |
| FatI | CATG | 3 cut(s) | 118, 346, 727 |
| FauNDI | CATATG | 1 cut(s) | 366 |
| FbaI | TGATCA | 2 cut(s) | 28, 265 |
| Fnu4HI | GCNGC | 3 cut(s) | 123, 324, 381 |
| FokI | GGATG | 3 cut(s) | 260, 287, 677 |
| FriOI | GRGCYC | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 3 cut(s) | 123, 324, 381 |
| FspBI | CTAG | 5 cut(s) | 146, 222, 384, 609, 696 |
| GluI | GCNGC | 3 cut(s) | 123, 324, 381 |
| HaeIII | GGCC | 1 cut(s) | 134 |
| HapII | CCGG | 1 cut(s) | 568 |
| Hin1II | CATG | 3 cut(s) | 122, 350, 731 |
| HinfI | GANTC | 4 cut(s) | 231, 305, 644, 680 |
| HpaII | CCGG | 1 cut(s) | 568 |
| HphI | GGTGA | 3 cut(s) | 401, 469, 593 |
| Hpy166II | GTNNAC | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 493, 552 |
| Hpy188III | TCNNGA | 3 cut(s) | 146, 299, 623 |
| Hpy8I | GTNNAC | 1 cut(s) | 13 |
| HpyAV | CCTTC | 3 cut(s) | 88, 186, 407 |
| HpyCH4III | ACNGT | 1 cut(s) | 260 |
| HpyCH4IV | ACGT | 2 cut(s) | 76, 185 |
| HpyCH4V | TGCA | 2 cut(s) | 125, 727 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 119, 131, 329, 380, 386, 605 |
| HpyF3I | CTNAG | 2 cut(s) | 204, 375 |
| HpySE526I | ACGT | 2 cut(s) | 76, 185 |
| Hsp92II | CATG | 3 cut(s) | 122, 350, 731 |
| Ksp22I | TGATCA | 2 cut(s) | 28, 265 |
| Kzo9I | GATC | 3 cut(s) | 28, 265, 488 |
| LguI | GCTCTTC | 1 cut(s) | 366 |
| Lsp1109I | GCAGC | 3 cut(s) | 109, 310, 367 |
| MaeI | CTAG | 5 cut(s) | 146, 222, 384, 609, 696 |
| MaeII | ACGT | 2 cut(s) | 76, 185 |
| MaeIII | GTNAC | 2 cut(s) | 77, 440 |
| MalI | GATC | 3 cut(s) | 30, 267, 490 |
| MboI | GATC | 3 cut(s) | 28, 265, 488 |
| MboII | GAAGA | 7 cut(s) | 161, 190, 345, 353, 494, 524, 689 |
| MflI | RGATCY | 1 cut(s) | 488 |
| MhlI | GDGCHC | 1 cut(s) | 136 |
| MluCI | AATT | 3 cut(s) | 18, 294, 735 |
| MlyI | GAGTC | 2 cut(s) | 225, 653 |
| MnlI | CCTC | 7 cut(s) | 124, 327, 354, 364, 370, 692, 730 |
| Mph1103I | ATGCAT | 1 cut(s) | 729 |
| MseI | TTAA | 5 cut(s) | 21, 108, 240, 734, 741 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspI | CCGG | 1 cut(s) | 568 |
| MspR9I | CCNGG | 3 cut(s) | 174, 569, 662 |
| Mva1269I | GAATGC | 1 cut(s) | 466 |
| MvaI | CCWGG | 2 cut(s) | 174, 662 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 119, 131, 329, 380, 386, 605 |
| NciI | CCSGG | 1 cut(s) | 569 |
| NdeI | CATATG | 1 cut(s) | 366 |
| NdeII | GATC | 3 cut(s) | 28, 265, 488 |
| NlaIII | CATG | 3 cut(s) | 122, 350, 731 |
| NlaIV | GGNNCC | 2 cut(s) | 62, 134 |
| NmuCI | GTSAC | 1 cut(s) | 440 |
| NsiI | ATGCAT | 1 cut(s) | 729 |
| NspI | RCATGY | 2 cut(s) | 122, 731 |
| PaeI | GCATGC | 1 cut(s) | 731 |
| PciSI | GCTCTTC | 1 cut(s) | 366 |
| PctI | GAATGC | 1 cut(s) | 466 |
| PfeI | GAWTC | 2 cut(s) | 305, 680 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 224 |
| PfoI | TCCNGGA | 2 cut(s) | 567, 660 |
| PkrI | GCNGC | 3 cut(s) | 124, 325, 382 |
| PleI | GAGTC | 2 cut(s) | 225, 652 |
| PmaCI | CACGTG | 1 cut(s) | 186 |
| PmlI | CACGTG | 1 cut(s) | 186 |
| PpsI | GAGTC | 2 cut(s) | 225, 652 |
| Ppu21I | YACGTR | 1 cut(s) | 186 |
| PpuMI | RGGWCCY | 1 cut(s) | 61 |
| PshBI | ATTAAT | 2 cut(s) | 21, 741 |
| Psp5II | RGGWCCY | 1 cut(s) | 61 |
| Psp6I | CCWGG | 2 cut(s) | 172, 660 |
| PspCI | CACGTG | 1 cut(s) | 186 |
| PspGI | CCWGG | 2 cut(s) | 172, 660 |
| PspN4I | GGNNCC | 2 cut(s) | 62, 134 |
| PspOMI | GGGCCC | 1 cut(s) | 132 |
| PspPI | GGNCC | 3 cut(s) | 61, 132, 133 |
| PspPPI | RGGWCCY | 1 cut(s) | 61 |
| PsuI | RGATCY | 1 cut(s) | 488 |
| RsaI | GTAC | 2 cut(s) | 313, 669 |
| RsaNI | GTAC | 2 cut(s) | 312, 668 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SapI | GCTCTTC | 1 cut(s) | 366 |
| SaqAI | TTAA | 5 cut(s) | 21, 108, 240, 734, 741 |
| SatI | GCNGC | 3 cut(s) | 123, 324, 381 |
| Sau3AI | GATC | 3 cut(s) | 28, 265, 488 |
| Sau96I | GGNCC | 3 cut(s) | 61, 132, 133 |
| SchI | GAGTC | 2 cut(s) | 225, 653 |
| ScrFI | CCNGG | 3 cut(s) | 174, 569, 662 |
| SduI | GDGCHC | 1 cut(s) | 136 |
| SinI | GGWCC | 1 cut(s) | 61 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 1 cut(s) | 233 |
| SmoI | CTYRAG | 1 cut(s) | 233 |
| SphI | GCATGC | 1 cut(s) | 731 |
| Sse9I | AATT | 3 cut(s) | 18, 294, 735 |
| SsiI | CCGC | 1 cut(s) | 502 |
| SspI | AATATT | 1 cut(s) | 691 |
| SspMI | CTAG | 5 cut(s) | 146, 222, 384, 609, 696 |
| StyD4I | CCNGG | 3 cut(s) | 172, 567, 660 |
| TaaI | ACNGT | 1 cut(s) | 260 |
| TaiI | ACGT | 2 cut(s) | 79, 188 |
| TasI | AATT | 3 cut(s) | 18, 294, 735 |
| TatI | WGTACW | 1 cut(s) | 667 |
| TfiI | GAWTC | 2 cut(s) | 305, 680 |
| Tru1I | TTAA | 5 cut(s) | 21, 108, 240, 734, 741 |
| Tru9I | TTAA | 5 cut(s) | 21, 108, 240, 734, 741 |
| TseFI | GTSAC | 1 cut(s) | 440 |
| TseI | GCWGC | 3 cut(s) | 122, 323, 380 |
| Tsp45I | GTSAC | 1 cut(s) | 440 |
| TspDTI | ATGAA | 6 cut(s) | 17, 155, 318, 353, 525, 759 |
| TspGWI | ACGGA | 1 cut(s) | 535 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 224 |
| VpaK11BI | GGWCC | 1 cut(s) | 61 |
| VspI | ATTAAT | 2 cut(s) | 21, 741 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 331 |
| XbaI | TCTAGA | 1 cut(s) | 145 |
| XceI | RCATGY | 2 cut(s) | 122, 731 |
| XspI | CTAG | 5 cut(s) | 146, 222, 384, 609, 696 |
| Zsp2I | ATGCAT | 1 cut(s) | 729 |