Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 98 - 157 | 7.1e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 265, 273 |
| AfaI | GTAC | 1 cut(s) | 61 |
| AgeI | ACCGGT | 1 cut(s) | 33 |
| AgsI | TTSAA | 5 cut(s) | 85, 305, 389, 401, 506 |
| AjnI | CCWGG | 1 cut(s) | 472 |
| AluBI | AGCT | 4 cut(s) | 166, 357, 421, 479 |
| AluI | AGCT | 4 cut(s) | 166, 357, 421, 479 |
| Alw26I | GTCTC | 1 cut(s) | 530 |
| AlwI | GGATC | 2 cut(s) | 265, 273 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 479 |
| AoxI | GGCC | 1 cut(s) | 441 |
| ApeKI | GCWGC | 1 cut(s) | 452 |
| AseI | ATTAAT | 1 cut(s) | 111 |
| AsiGI | ACCGGT | 1 cut(s) | 33 |
| AspS9I | GGNCC | 1 cut(s) | 368 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| AvaII | GGWCC | 1 cut(s) | 368 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 301, 334 |
| BbsI | GAAGAC | 1 cut(s) | 397 |
| BbvI | GCAGC | 1 cut(s) | 464 |
| BccI | CCATC | 2 cut(s) | 67, 95 |
| BceAI | ACGGC | 1 cut(s) | 397 |
| BciT130I | CCWGG | 1 cut(s) | 474 |
| BcoDI | GTCTC | 1 cut(s) | 530 |
| BfaI | CTAG | 1 cut(s) | 516 |
| BisI | GCNGC | 1 cut(s) | 453 |
| BlsI | GCNGC | 1 cut(s) | 454 |
| BmcAI | AGTACT | 1 cut(s) | 61 |
| Bme1390I | CCNGG | 1 cut(s) | 474 |
| Bme18I | GGWCC | 1 cut(s) | 368 |
| BmgT120I | GGNCC | 1 cut(s) | 368 |
| BmiI | GGNNCC | 3 cut(s) | 161, 369, 511 |
| BmrFI | CCNGG | 1 cut(s) | 474 |
| BoxI | GACNNNNGTC | 2 cut(s) | 174, 218 |
| BpiI | GAAGAC | 1 cut(s) | 397 |
| BpmI | CTGGAG | 1 cut(s) | 76 |
| BpuEI | CTTGAG | 1 cut(s) | 298 |
| BsaI | GGTCTC | 1 cut(s) | 530 |
| BsaWI | WCCGGW | 1 cut(s) | 33 |
| Bse118I | RCCGGY | 1 cut(s) | 33 |
| Bse1I | ACTGG | 1 cut(s) | 59 |
| Bse3DI | GCAATG | 1 cut(s) | 339 |
| BseBI | CCWGG | 1 cut(s) | 474 |
| BseGI | GGATG | 3 cut(s) | 106, 298, 469 |
| BseMI | GCAATG | 1 cut(s) | 339 |
| BseMII | CTCAG | 2 cut(s) | 197, 541 |
| BseNI | ACTGG | 1 cut(s) | 59 |
| BseXI | GCAGC | 1 cut(s) | 464 |
| BshFI | GGCC | 1 cut(s) | 443 |
| BshTI | ACCGGT | 1 cut(s) | 33 |
| BsiSI | CCGG | 1 cut(s) | 34 |
| BslFI | GGGAC | 2 cut(s) | 149, 323 |
| BsmAI | GTCTC | 1 cut(s) | 530 |
| BsmFI | GGGAC | 2 cut(s) | 149, 323 |
| BsmI | GAATGC | 1 cut(s) | 384 |
| BsnI | GGCC | 1 cut(s) | 443 |
| Bso31I | GGTCTC | 1 cut(s) | 530 |
| Bsp143I | GATC | 3 cut(s) | 90, 265, 270 |
| BspANI | GGCC | 1 cut(s) | 443 |
| BspCNI | CTCAG | 2 cut(s) | 196, 540 |
| BspLI | GGNNCC | 3 cut(s) | 161, 369, 511 |
| BspPI | GGATC | 2 cut(s) | 265, 273 |
| BspTNI | GGTCTC | 1 cut(s) | 530 |
| BsrDI | GCAATG | 1 cut(s) | 339 |
| BsrFI | RCCGGY | 1 cut(s) | 33 |
| BsrI | ACTGG | 1 cut(s) | 59 |
| BssAI | RCCGGY | 1 cut(s) | 33 |
| BssMI | GATC | 3 cut(s) | 90, 265, 270 |
| Bst2UI | CCWGG | 1 cut(s) | 474 |
| BstDEI | CTNAG | 2 cut(s) | 183, 527 |
| BstF5I | GGATG | 3 cut(s) | 106, 298, 469 |
| BstKTI | GATC | 3 cut(s) | 93, 268, 273 |
| BstMAI | GTCTC | 1 cut(s) | 530 |
| BstMBI | GATC | 3 cut(s) | 90, 265, 270 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 449 |
| BstNI | CCWGG | 1 cut(s) | 474 |
| BstNSI | RCATGY | 1 cut(s) | 191 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 174, 218 |
| BstSCI | CCNGG | 1 cut(s) | 472 |
| BstV1I | GCAGC | 1 cut(s) | 464 |
| BstV2I | GAAGAC | 1 cut(s) | 397 |
| BstX2I | RGATCY | 1 cut(s) | 270 |
| BstYI | RGATCY | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 443 |
| BtsCI | GGATG | 3 cut(s) | 106, 298, 469 |
| BtsIMutI | CAGTG | 1 cut(s) | 52 |
| CaiI | CAGNNNCTG | 1 cut(s) | 479 |
| Cfr10I | RCCGGY | 1 cut(s) | 33 |
| Cfr13I | GGNCC | 1 cut(s) | 368 |
| Csp6I | GTAC | 1 cut(s) | 60 |
| CspAI | ACCGGT | 1 cut(s) | 33 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 502, 537 |
| CviAII | CATG | 4 cut(s) | 13, 188, 428, 499 |
| CviJI | RGCY | 6 cut(s) | 166, 357, 421, 443, 467, 479 |
| CviKI_1 | RGCY | 6 cut(s) | 166, 357, 421, 443, 467, 479 |
| CviQI | GTAC | 1 cut(s) | 60 |
| DdeI | CTNAG | 2 cut(s) | 183, 527 |
| DpnI | GATC | 3 cut(s) | 92, 267, 272 |
| DpnII | GATC | 3 cut(s) | 90, 265, 270 |
| Eco31I | GGTCTC | 1 cut(s) | 530 |
| Eco32I | GATATC | 1 cut(s) | 121 |
| Eco47I | GGWCC | 1 cut(s) | 368 |
| EcoRII | CCWGG | 1 cut(s) | 472 |
| EcoRV | GATATC | 1 cut(s) | 121 |
| FaeI | CATG | 4 cut(s) | 16, 191, 431, 502 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 381, 413 |
| FaqI | GGGAC | 2 cut(s) | 149, 323 |
| FatI | CATG | 4 cut(s) | 12, 187, 427, 498 |
| Fnu4HI | GCNGC | 1 cut(s) | 453 |
| FokI | GGATG | 3 cut(s) | 113, 305, 456 |
| Fsp4HI | GCNGC | 1 cut(s) | 453 |
| FspBI | CTAG | 1 cut(s) | 516 |
| GluI | GCNGC | 1 cut(s) | 453 |
| GsuI | CTGGAG | 1 cut(s) | 76 |
| HaeIII | GGCC | 1 cut(s) | 443 |
| HapII | CCGG | 1 cut(s) | 34 |
| Hin1II | CATG | 4 cut(s) | 16, 191, 431, 502 |
| HincII | GTYRAC | 1 cut(s) | 79 |
| HindII | GTYRAC | 1 cut(s) | 79 |
| HinfI | GANTC | 3 cut(s) | 311, 337, 424 |
| HpaI | GTTAAC | 1 cut(s) | 79 |
| HpaII | CCGG | 1 cut(s) | 34 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 5 cut(s) | 9, 72, 270, 372, 530 |
| Hpy188III | TCNNGA | 1 cut(s) | 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 79 |
| HpyAV | CCTTC | 1 cut(s) | 299 |
| HpyCH4V | TGCA | 2 cut(s) | 211, 332 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 449 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 527 |
| Hsp92II | CATG | 4 cut(s) | 16, 191, 431, 502 |
| KspAI | GTTAAC | 1 cut(s) | 79 |
| Kzo9I | GATC | 3 cut(s) | 90, 265, 270 |
| LmnI | GCTCC | 1 cut(s) | 476 |
| LpnPI | CCDG | 6 cut(s) | 40, 47, 152, 176, 459, 486 |
| Lsp1109I | GCAGC | 1 cut(s) | 464 |
| MaeI | CTAG | 1 cut(s) | 516 |
| MaeIII | GTNAC | 1 cut(s) | 200 |
| MalI | GATC | 3 cut(s) | 92, 267, 272 |
| MboI | GATC | 3 cut(s) | 90, 265, 270 |
| MboII | GAAGA | 3 cut(s) | 37, 359, 397 |
| MflI | RGATCY | 1 cut(s) | 270 |
| MluCI | AATT | 3 cut(s) | 108, 124, 145 |
| MlyI | GAGTC | 1 cut(s) | 305 |
| MnlI | CCTC | 6 cut(s) | 9, 15, 42, 91, 433, 485 |
| MseI | TTAA | 2 cut(s) | 78, 111 |
| MspA1I | CMGCKG | 1 cut(s) | 166 |
| MspI | CCGG | 1 cut(s) | 34 |
| MspR9I | CCNGG | 1 cut(s) | 474 |
| Mva1269I | GAATGC | 1 cut(s) | 384 |
| MvaI | CCWGG | 1 cut(s) | 474 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 449 |
| NdeII | GATC | 3 cut(s) | 90, 265, 270 |
| NlaIII | CATG | 4 cut(s) | 16, 191, 431, 502 |
| NlaIV | GGNNCC | 3 cut(s) | 161, 369, 511 |
| NspI | RCATGY | 1 cut(s) | 191 |
| PctI | GAATGC | 1 cut(s) | 384 |
| PfeI | GAWTC | 2 cut(s) | 337, 424 |
| PfoI | TCCNGGA | 1 cut(s) | 472 |
| PinAI | ACCGGT | 1 cut(s) | 33 |
| PkrI | GCNGC | 1 cut(s) | 454 |
| PleI | GAGTC | 1 cut(s) | 305 |
| PpsI | GAGTC | 1 cut(s) | 305 |
| PshAI | GACNNNNGTC | 2 cut(s) | 174, 218 |
| PshBI | ATTAAT | 1 cut(s) | 111 |
| Psp6I | CCWGG | 1 cut(s) | 472 |
| PspGI | CCWGG | 1 cut(s) | 472 |
| PspN4I | GGNNCC | 3 cut(s) | 161, 369, 511 |
| PspPI | GGNCC | 1 cut(s) | 368 |
| PstNI | CAGNNNCTG | 1 cut(s) | 479 |
| PsuI | RGATCY | 1 cut(s) | 270 |
| PvuII | CAGCTG | 1 cut(s) | 166 |
| RsaI | GTAC | 1 cut(s) | 61 |
| RsaNI | GTAC | 1 cut(s) | 60 |
| SaqAI | TTAA | 2 cut(s) | 78, 111 |
| SatI | GCNGC | 1 cut(s) | 453 |
| Sau3AI | GATC | 3 cut(s) | 90, 265, 270 |
| Sau96I | GGNCC | 1 cut(s) | 368 |
| ScaI | AGTACT | 1 cut(s) | 61 |
| SchI | GAGTC | 1 cut(s) | 305 |
| ScrFI | CCNGG | 1 cut(s) | 474 |
| SetI | ASST | 6 cut(s) | 20, 168, 359, 423, 481, 521 |
| SinI | GGWCC | 1 cut(s) | 368 |
| SmlI | CTYRAG | 1 cut(s) | 313 |
| SmoI | CTYRAG | 1 cut(s) | 313 |
| Sse9I | AATT | 3 cut(s) | 108, 124, 145 |
| SspMI | CTAG | 1 cut(s) | 516 |
| StyD4I | CCNGG | 1 cut(s) | 472 |
| TaqI | TCGA | 2 cut(s) | 222, 490 |
| TasI | AATT | 3 cut(s) | 108, 124, 145 |
| TatI | WGTACW | 1 cut(s) | 59 |
| TfiI | GAWTC | 2 cut(s) | 337, 424 |
| Tru1I | TTAA | 2 cut(s) | 78, 111 |
| Tru9I | TTAA | 2 cut(s) | 78, 111 |
| TscAI | CASTG | 1 cut(s) | 59 |
| TseI | GCWGC | 1 cut(s) | 452 |
| TspDTI | ATGAA | 1 cut(s) | 350 |
| TspRI | CASTG | 1 cut(s) | 59 |
| VpaK11BI | GGWCC | 1 cut(s) | 368 |
| VspI | ATTAAT | 1 cut(s) | 111 |
| XceI | RCATGY | 1 cut(s) | 191 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 170 |
| XspI | CTAG | 1 cut(s) | 516 |
| ZrmI | AGTACT | 1 cut(s) | 61 |