Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 66 - 200 | 2.3e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 348 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 179, 586 |
| AciI | CCGC | 4 cut(s) | 9, 298, 359, 638 |
| AclWI | GGATC | 1 cut(s) | 136 |
| AcsI | RAATTY | 1 cut(s) | 513 |
| AcuI | CTGAAG | 1 cut(s) | 209 |
| AdeI | CACNNNGTG | 1 cut(s) | 179 |
| AfaI | GTAC | 1 cut(s) | 338 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 179, 304, 451, 586 |
| AgsI | TTSAA | 1 cut(s) | 401 |
| AjnI | CCWGG | 2 cut(s) | 302, 640 |
| AluBI | AGCT | 5 cut(s) | 193, 209, 331, 438, 480 |
| AluI | AGCT | 5 cut(s) | 193, 209, 331, 438, 480 |
| Alw21I | GWGCWC | 1 cut(s) | 663 |
| Alw26I | GTCTC | 2 cut(s) | 142, 454 |
| AlwI | GGATC | 1 cut(s) | 136 |
| AoxI | GGCC | 1 cut(s) | 576 |
| ApeKI | GCWGC | 1 cut(s) | 60 |
| ApoI | RAATTY | 1 cut(s) | 513 |
| AspS9I | GGNCC | 1 cut(s) | 577 |
| AsuNHI | GCTAGC | 1 cut(s) | 476 |
| BbsI | GAAGAC | 1 cut(s) | 65 |
| Bbv12I | GWGCWC | 1 cut(s) | 663 |
| BbvI | GCAGC | 1 cut(s) | 72 |
| BccI | CCATC | 3 cut(s) | 197, 402, 588 |
| BceAI | ACGGC | 1 cut(s) | 200 |
| BciT130I | CCWGG | 2 cut(s) | 304, 642 |
| BcoDI | GTCTC | 2 cut(s) | 142, 454 |
| BfaI | CTAG | 5 cut(s) | 68, 200, 477, 600, 673 |
| BfuAI | ACCTGC | 1 cut(s) | 348 |
| BisI | GCNGC | 2 cut(s) | 61, 638 |
| BlsI | GCNGC | 2 cut(s) | 62, 639 |
| Bme1390I | CCNGG | 2 cut(s) | 304, 642 |
| BmgT120I | GGNCC | 1 cut(s) | 577 |
| BmiI | GGNNCC | 3 cut(s) | 235, 270, 296 |
| BmrFI | CCNGG | 2 cut(s) | 304, 642 |
| BmrI | ACTGGG | 2 cut(s) | 271, 296 |
| BmtI | GCTAGC | 1 cut(s) | 480 |
| BmuI | ACTGGG | 2 cut(s) | 271, 296 |
| BpiI | GAAGAC | 1 cut(s) | 65 |
| BpmI | CTGGAG | 1 cut(s) | 255 |
| BsaAI | YACGTR | 1 cut(s) | 19 |
| BsaI | GGTCTC | 1 cut(s) | 142 |
| BsaJI | CCNNGG | 2 cut(s) | 302, 303 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 225, 255 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 179, 304, 451, 586 |
| Bse118I | RCCGGY | 1 cut(s) | 236 |
| Bse1I | ACTGG | 2 cut(s) | 277, 291 |
| Bse3DI | GCAATG | 1 cut(s) | 478 |
| BseBI | CCWGG | 2 cut(s) | 304, 642 |
| BseDI | CCNNGG | 2 cut(s) | 302, 303 |
| BseGI | GGATG | 3 cut(s) | 259, 413, 661 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 179, 304, 451, 586 |
| BseMI | GCAATG | 1 cut(s) | 478 |
| BseMII | CTCAG | 1 cut(s) | 474 |
| BseNI | ACTGG | 2 cut(s) | 277, 291 |
| BseXI | GCAGC | 1 cut(s) | 72 |
| BsgI | GTGCAG | 1 cut(s) | 329 |
| BshFI | GGCC | 1 cut(s) | 578 |
| BsiHKAI | GWGCWC | 1 cut(s) | 663 |
| BsiSI | CCGG | 1 cut(s) | 237 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 179, 304, 451, 586 |
| BsmAI | GTCTC | 2 cut(s) | 142, 454 |
| BsnI | GGCC | 1 cut(s) | 578 |
| Bso31I | GGTCTC | 1 cut(s) | 142 |
| Bsp1286I | GDGCHC | 1 cut(s) | 663 |
| Bsp143I | GATC | 1 cut(s) | 128 |
| BspACI | CCGC | 4 cut(s) | 9, 298, 359, 638 |
| BspANI | GGCC | 1 cut(s) | 578 |
| BspCNI | CTCAG | 1 cut(s) | 475 |
| BspLI | GGNNCC | 3 cut(s) | 235, 270, 296 |
| BspMI | ACCTGC | 1 cut(s) | 348 |
| BspOI | GCTAGC | 1 cut(s) | 480 |
| BspPI | GGATC | 1 cut(s) | 136 |
| BspTNI | GGTCTC | 1 cut(s) | 142 |
| BsrDI | GCAATG | 1 cut(s) | 478 |
| BsrFI | RCCGGY | 1 cut(s) | 236 |
| BsrI | ACTGG | 2 cut(s) | 277, 291 |
| BssAI | RCCGGY | 1 cut(s) | 236 |
| BssECI | CCNNGG | 2 cut(s) | 302, 303 |
| BssMI | GATC | 1 cut(s) | 128 |
| Bst2UI | CCWGG | 2 cut(s) | 304, 642 |
| Bst4CI | ACNGT | 3 cut(s) | 528, 560, 616 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 596 |
| BstBAI | YACGTR | 1 cut(s) | 19 |
| BstC8I | GCNNGC | 4 cut(s) | 293, 357, 373, 478 |
| BstDEI | CTNAG | 1 cut(s) | 483 |
| BstF5I | GGATG | 3 cut(s) | 259, 413, 661 |
| BstKTI | GATC | 1 cut(s) | 131 |
| BstMAI | GTCTC | 2 cut(s) | 142, 454 |
| BstMBI | GATC | 1 cut(s) | 128 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 297, 477, 596 |
| BstNI | CCWGG | 2 cut(s) | 304, 642 |
| BstNSI | RCATGY | 2 cut(s) | 48, 375 |
| BstSCI | CCNGG | 2 cut(s) | 302, 640 |
| BstV1I | GCAGC | 1 cut(s) | 72 |
| BstV2I | GAAGAC | 1 cut(s) | 65 |
| BsuRI | GGCC | 1 cut(s) | 578 |
| BtsCI | GGATG | 3 cut(s) | 259, 413, 661 |
| BtsIMutI | CAGTG | 1 cut(s) | 621 |
| BveI | ACCTGC | 1 cut(s) | 348 |
| Cac8I | GCNNGC | 4 cut(s) | 293, 357, 373, 478 |
| Cfr10I | RCCGGY | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 1 cut(s) | 577 |
| Csp6I | GTAC | 1 cut(s) | 337 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 84, 119, 555, 590 |
| CviAII | CATG | 5 cut(s) | 13, 45, 77, 132, 372 |
| CviQI | GTAC | 1 cut(s) | 337 |
| DdeI | CTNAG | 1 cut(s) | 483 |
| DpnI | GATC | 1 cut(s) | 130 |
| DpnII | GATC | 1 cut(s) | 128 |
| DraI | TTTAAA | 1 cut(s) | 214 |
| DraIII | CACNNNGTG | 1 cut(s) | 179 |
| EciI | GGCGGA | 1 cut(s) | 287 |
| Eco31I | GGTCTC | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 1 cut(s) | 209 |
| EcoRII | CCWGG | 2 cut(s) | 302, 640 |
| FaeI | CATG | 5 cut(s) | 16, 48, 80, 135, 375 |
| FatI | CATG | 5 cut(s) | 12, 44, 76, 131, 371 |
| Fnu4HI | GCNGC | 2 cut(s) | 61, 638 |
| FokI | GGATG | 3 cut(s) | 266, 420, 668 |
| Fsp4HI | GCNGC | 2 cut(s) | 61, 638 |
| FspBI | CTAG | 5 cut(s) | 68, 200, 477, 600, 673 |
| GluI | GCNGC | 2 cut(s) | 61, 638 |
| GsuI | CTGGAG | 1 cut(s) | 255 |
| HaeIII | GGCC | 1 cut(s) | 578 |
| HapII | CCGG | 1 cut(s) | 237 |
| Hin1II | CATG | 5 cut(s) | 16, 48, 80, 135, 375 |
| HincII | GTYRAC | 1 cut(s) | 118 |
| HindII | GTYRAC | 1 cut(s) | 118 |
| HpaII | CCGG | 1 cut(s) | 237 |
| Hpy166II | GTNNAC | 3 cut(s) | 118, 173, 182 |
| Hpy188I | TCNGA | 2 cut(s) | 465, 484 |
| Hpy188III | TCNNGA | 2 cut(s) | 251, 282 |
| Hpy8I | GTNNAC | 3 cut(s) | 118, 173, 182 |
| HpyCH4III | ACNGT | 3 cut(s) | 528, 560, 616 |
| HpyCH4IV | ACGT | 1 cut(s) | 18 |
| HpyCH4V | TGCA | 9 cut(s) | 16, 44, 60, 135, 310, 343, 355, 375, 523 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 297, 477, 596 |
| HpyF3I | CTNAG | 1 cut(s) | 483 |
| HpySE526I | ACGT | 1 cut(s) | 18 |
| Hsp92II | CATG | 5 cut(s) | 16, 48, 80, 135, 375 |
| Kzo9I | GATC | 1 cut(s) | 128 |
| LmnI | GCTCC | 6 cut(s) | 206, 233, 274, 300, 443, 619 |
| Lsp1109I | GCAGC | 1 cut(s) | 72 |
| MaeI | CTAG | 5 cut(s) | 68, 200, 477, 600, 673 |
| MaeII | ACGT | 1 cut(s) | 18 |
| MalI | GATC | 1 cut(s) | 130 |
| MboI | GATC | 1 cut(s) | 128 |
| MboII | GAAGA | 2 cut(s) | 65, 119 |
| MhlI | GDGCHC | 1 cut(s) | 663 |
| MluCI | AATT | 1 cut(s) | 513 |
| MnlI | CCTC | 6 cut(s) | 75, 259, 355, 478, 496, 661 |
| MseI | TTAA | 2 cut(s) | 23, 213 |
| MslI | CAYNNNNRTG | 1 cut(s) | 49 |
| MspI | CCGG | 1 cut(s) | 237 |
| MspR9I | CCNGG | 2 cut(s) | 304, 642 |
| MvaI | CCWGG | 2 cut(s) | 304, 642 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 297, 477, 596 |
| NdeII | GATC | 1 cut(s) | 128 |
| NheI | GCTAGC | 1 cut(s) | 476 |
| NlaIII | CATG | 5 cut(s) | 16, 48, 80, 135, 375 |
| NlaIV | GGNNCC | 3 cut(s) | 235, 270, 296 |
| NmeAIII | GCCGAG | 1 cut(s) | 431 |
| NspI | RCATGY | 2 cut(s) | 48, 375 |
| PaeI | GCATGC | 1 cut(s) | 375 |
| PasI | CCCWGGG | 1 cut(s) | 303 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 179, 586 |
| PkrI | GCNGC | 2 cut(s) | 62, 639 |
| Ppu21I | YACGTR | 1 cut(s) | 19 |
| Psp6I | CCWGG | 2 cut(s) | 302, 640 |
| PspGI | CCWGG | 2 cut(s) | 302, 640 |
| PspN4I | GGNNCC | 3 cut(s) | 235, 270, 296 |
| PspPI | GGNCC | 1 cut(s) | 577 |
| RsaI | GTAC | 1 cut(s) | 338 |
| RsaNI | GTAC | 1 cut(s) | 337 |
| RseI | CAYNNNNRTG | 1 cut(s) | 49 |
| SaqAI | TTAA | 2 cut(s) | 23, 213 |
| SatI | GCNGC | 2 cut(s) | 61, 638 |
| Sau3AI | GATC | 1 cut(s) | 128 |
| Sau96I | GGNCC | 1 cut(s) | 577 |
| ScrFI | CCNGG | 2 cut(s) | 304, 642 |
| SduI | GDGCHC | 1 cut(s) | 663 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 49 |
| SphI | GCATGC | 1 cut(s) | 375 |
| Sse9I | AATT | 1 cut(s) | 513 |
| SsiI | CCGC | 4 cut(s) | 9, 298, 359, 638 |
| SspMI | CTAG | 5 cut(s) | 68, 200, 477, 600, 673 |
| StyD4I | CCNGG | 2 cut(s) | 302, 640 |
| TaaI | ACNGT | 3 cut(s) | 528, 560, 616 |
| TaiI | ACGT | 1 cut(s) | 21 |
| TasI | AATT | 1 cut(s) | 513 |
| TauI | GCSGC | 1 cut(s) | 640 |
| Tru1I | TTAA | 2 cut(s) | 23, 213 |
| Tru9I | TTAA | 2 cut(s) | 23, 213 |
| TscAI | CASTG | 1 cut(s) | 621 |
| TseI | GCWGC | 1 cut(s) | 60 |
| TspDTI | ATGAA | 1 cut(s) | 65 |
| TspGWI | ACGGA | 2 cut(s) | 428, 430 |
| TspRI | CASTG | 1 cut(s) | 621 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 179, 586 |
| XapI | RAATTY | 1 cut(s) | 513 |
| XceI | RCATGY | 2 cut(s) | 48, 375 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 159 |
| XspI | CTAG | 5 cut(s) | 68, 200, 477, 600, 673 |