Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 566 |
| Acc36I | ACCTGC | 1 cut(s) | 566 |
| AccI | GTMKAC | 2 cut(s) | 73, 784 |
| AclWI | GGATC | 2 cut(s) | 721, 734 |
| AcsI | RAATTY | 4 cut(s) | 162, 186, 321, 686 |
| AfaI | GTAC | 2 cut(s) | 582, 741 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 294, 537, 736 |
| AgsI | TTSAA | 3 cut(s) | 113, 382, 441 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 310, 342, 665, 697 |
| AluBI | AGCT | 6 cut(s) | 171, 336, 407, 509, 828, 875 |
| AluI | AGCT | 6 cut(s) | 171, 336, 407, 509, 828, 875 |
| Alw26I | GTCTC | 3 cut(s) | 303, 456, 697 |
| AlwI | GGATC | 2 cut(s) | 721, 734 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 889 |
| AoxI | GGCC | 3 cut(s) | 21, 156, 665 |
| ApeKI | GCWGC | 2 cut(s) | 634, 767 |
| ApoI | RAATTY | 4 cut(s) | 162, 186, 321, 686 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 434, 466 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 436 |
| AsuHPI | GGTGA | 1 cut(s) | 608 |
| AsuII | TTCGAA | 1 cut(s) | 684 |
| BamHI | GGATCC | 1 cut(s) | 726 |
| BauI | CACGAG | 1 cut(s) | 876 |
| BbvI | GCAGC | 2 cut(s) | 621, 754 |
| BccI | CCATC | 5 cut(s) | 35, 535, 593, 616, 662 |
| BciVI | GTATCC | 1 cut(s) | 295 |
| BcoDI | GTCTC | 3 cut(s) | 303, 456, 697 |
| BfaI | CTAG | 1 cut(s) | 404 |
| BfmI | CTRYAG | 1 cut(s) | 890 |
| BfuAI | ACCTGC | 1 cut(s) | 566 |
| BfuI | GTATCC | 1 cut(s) | 295 |
| BisI | GCNGC | 2 cut(s) | 635, 768 |
| BlsI | GCNGC | 2 cut(s) | 636, 769 |
| BmiI | GGNNCC | 2 cut(s) | 525, 728 |
| BmsI | GCATC | 1 cut(s) | 293 |
| BpmI | CTGGAG | 2 cut(s) | 448, 844 |
| Bpu14I | TTCGAA | 1 cut(s) | 684 |
| BsaBI | GATNNNNATC | 1 cut(s) | 270 |
| BsaJI | CCNNGG | 1 cut(s) | 771 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 790, 820 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 294, 537, 736 |
| Bse8I | GATNNNNATC | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 771 |
| BseGI | GGATG | 5 cut(s) | 27, 284, 527, 627, 654 |
| BseJI | GATNNNNATC | 1 cut(s) | 270 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 294, 537, 736 |
| BseMII | CTCAG | 2 cut(s) | 461, 669 |
| BseRI | GAGGAG | 2 cut(s) | 346, 556 |
| BseXI | GCAGC | 2 cut(s) | 621, 754 |
| BseYI | CCCAGC | 1 cut(s) | 336 |
| BsgI | GTGCAG | 2 cut(s) | 59, 195 |
| BshFI | GGCC | 3 cut(s) | 23, 158, 667 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 294, 537, 736 |
| BsmAI | GTCTC | 3 cut(s) | 303, 456, 697 |
| BsnI | GGCC | 3 cut(s) | 23, 158, 667 |
| Bsp119I | TTCGAA | 1 cut(s) | 684 |
| Bsp1407I | TGTACA | 1 cut(s) | 580 |
| Bsp143I | GATC | 1 cut(s) | 726 |
| BspANI | GGCC | 3 cut(s) | 23, 158, 667 |
| BspCNI | CTCAG | 2 cut(s) | 460, 670 |
| BspLI | GGNNCC | 2 cut(s) | 525, 728 |
| BspMI | ACCTGC | 1 cut(s) | 566 |
| BspPI | GGATC | 2 cut(s) | 721, 734 |
| BspT104I | TTCGAA | 1 cut(s) | 684 |
| BsrGI | TGTACA | 1 cut(s) | 580 |
| BssECI | CCNNGG | 1 cut(s) | 771 |
| BssMI | GATC | 1 cut(s) | 726 |
| BssNAI | GTATAC | 1 cut(s) | 785 |
| BssSI | CACGAG | 1 cut(s) | 876 |
| BssT1I | CCWWGG | 1 cut(s) | 771 |
| Bst1107I | GTATAC | 1 cut(s) | 785 |
| Bst2BI | CACGAG | 1 cut(s) | 876 |
| Bst4CI | ACNGT | 1 cut(s) | 585 |
| BstAUI | TGTACA | 1 cut(s) | 580 |
| BstBI | TTCGAA | 1 cut(s) | 684 |
| BstC8I | GCNNGC | 2 cut(s) | 414, 669 |
| BstDEI | CTNAG | 3 cut(s) | 167, 447, 678 |
| BstF5I | GGATG | 5 cut(s) | 27, 284, 527, 627, 654 |
| BstKTI | GATC | 1 cut(s) | 729 |
| BstMAI | GTCTC | 3 cut(s) | 303, 456, 697 |
| BstMBI | GATC | 1 cut(s) | 726 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 413, 418 |
| BstSFI | CTRYAG | 1 cut(s) | 890 |
| BstV1I | GCAGC | 2 cut(s) | 621, 754 |
| BstX2I | RGATCY | 1 cut(s) | 726 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 142 |
| BstYI | RGATCY | 1 cut(s) | 726 |
| BstZ17I | GTATAC | 1 cut(s) | 785 |
| BsuI | GTATCC | 1 cut(s) | 295 |
| BsuRI | GGCC | 3 cut(s) | 23, 158, 667 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 5 cut(s) | 27, 284, 527, 627, 654 |
| BtsIMutI | CAGTG | 1 cut(s) | 590 |
| BveI | ACCTGC | 1 cut(s) | 566 |
| Cac8I | GCNNGC | 2 cut(s) | 414, 669 |
| CaiI | CAGNNNCTG | 1 cut(s) | 889 |
| Csp6I | GTAC | 2 cut(s) | 581, 740 |
| CviAII | CATG | 3 cut(s) | 56, 83, 214 |
| CviQI | GTAC | 2 cut(s) | 581, 740 |
| DdeI | CTNAG | 3 cut(s) | 167, 447, 678 |
| DpnI | GATC | 1 cut(s) | 728 |
| DpnII | GATC | 1 cut(s) | 726 |
| DraI | TTTAAA | 1 cut(s) | 552 |
| Eco130I | CCWWGG | 1 cut(s) | 771 |
| EcoT14I | CCWWGG | 1 cut(s) | 771 |
| EcoT22I | ATGCAT | 1 cut(s) | 397 |
| ErhI | CCWWGG | 1 cut(s) | 771 |
| FaeI | CATG | 3 cut(s) | 59, 86, 217 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 114, 146, 801, 833 |
| FatI | CATG | 3 cut(s) | 55, 82, 213 |
| FblI | GTMKAC | 2 cut(s) | 73, 784 |
| Fnu4HI | GCNGC | 2 cut(s) | 635, 768 |
| FokI | GGATG | 5 cut(s) | 14, 271, 514, 634, 641 |
| Fsp4HI | GCNGC | 2 cut(s) | 635, 768 |
| FspBI | CTAG | 1 cut(s) | 404 |
| GluI | GCNGC | 2 cut(s) | 635, 768 |
| GsaI | CCCAGC | 1 cut(s) | 340 |
| GsuI | CTGGAG | 2 cut(s) | 448, 844 |
| HaeIII | GGCC | 3 cut(s) | 23, 158, 667 |
| Hin1II | CATG | 3 cut(s) | 59, 86, 217 |
| HinfI | GANTC | 1 cut(s) | 793 |
| HphI | GGTGA | 1 cut(s) | 608 |
| Hpy166II | GTNNAC | 5 cut(s) | 74, 581, 742, 785, 881 |
| Hpy188I | TCNGA | 2 cut(s) | 679, 798 |
| Hpy188III | TCNNGA | 3 cut(s) | 809, 823, 878 |
| Hpy8I | GTNNAC | 5 cut(s) | 74, 581, 742, 785, 881 |
| HpyAV | CCTTC | 2 cut(s) | 148, 298 |
| HpyCH4III | ACNGT | 1 cut(s) | 585 |
| HpyCH4V | TGCA | 5 cut(s) | 40, 104, 176, 284, 395 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 413, 418 |
| HpyF3I | CTNAG | 3 cut(s) | 167, 447, 678 |
| Hsp92II | CATG | 3 cut(s) | 59, 86, 217 |
| Kzo9I | GATC | 1 cut(s) | 726 |
| LmnI | GCTCC | 3 cut(s) | 333, 529, 825 |
| Lsp1109I | GCAGC | 2 cut(s) | 621, 754 |
| LweI | GCATC | 1 cut(s) | 293 |
| MaeI | CTAG | 1 cut(s) | 404 |
| MalI | GATC | 1 cut(s) | 728 |
| MboI | GATC | 1 cut(s) | 726 |
| MboII | GAAGA | 1 cut(s) | 233 |
| MflI | RGATCY | 1 cut(s) | 726 |
| MlyI | GAGTC | 1 cut(s) | 802 |
| MmeI | TCCRAC | 1 cut(s) | 776 |
| Mph1103I | ATGCAT | 1 cut(s) | 397 |
| MroXI | GAANNNNTTC | 1 cut(s) | 436 |
| MseI | TTAA | 2 cut(s) | 147, 551 |
| MslI | CAYNNNNRTG | 1 cut(s) | 721 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 413, 418 |
| NdeII | GATC | 1 cut(s) | 726 |
| NlaIII | CATG | 3 cut(s) | 59, 86, 217 |
| NlaIV | GGNNCC | 2 cut(s) | 525, 728 |
| NsiI | ATGCAT | 1 cut(s) | 397 |
| NspV | TTCGAA | 1 cut(s) | 684 |
| PaqCI | CACCTGC | 1 cut(s) | 566 |
| PdmI | GAANNNNTTC | 1 cut(s) | 436 |
| PkrI | GCNGC | 2 cut(s) | 636, 769 |
| PleI | GAGTC | 1 cut(s) | 801 |
| PpsI | GAGTC | 1 cut(s) | 801 |
| PspFI | CCCAGC | 1 cut(s) | 336 |
| PspN4I | GGNNCC | 2 cut(s) | 525, 728 |
| PstNI | CAGNNNCTG | 1 cut(s) | 889 |
| PsuI | RGATCY | 1 cut(s) | 726 |
| RsaI | GTAC | 2 cut(s) | 582, 741 |
| RsaNI | GTAC | 2 cut(s) | 581, 740 |
| RseI | CAYNNNNRTG | 1 cut(s) | 721 |
| SaqAI | TTAA | 2 cut(s) | 147, 551 |
| SatI | GCNGC | 2 cut(s) | 635, 768 |
| Sau3AI | GATC | 1 cut(s) | 726 |
| SchI | GAGTC | 1 cut(s) | 802 |
| SfaNI | GCATC | 1 cut(s) | 293 |
| SfcI | CTRYAG | 1 cut(s) | 890 |
| SfuI | TTCGAA | 1 cut(s) | 684 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 721 |
| SspMI | CTAG | 1 cut(s) | 404 |
| StyI | CCWWGG | 1 cut(s) | 771 |
| TaaI | ACNGT | 1 cut(s) | 585 |
| TaqI | TCGA | 1 cut(s) | 684 |
| TaqII | GACCGA | 1 cut(s) | 59 |
| TatI | WGTACW | 1 cut(s) | 580 |
| Tru1I | TTAA | 2 cut(s) | 147, 551 |
| Tru9I | TTAA | 2 cut(s) | 147, 551 |
| TscAI | CASTG | 1 cut(s) | 590 |
| TseI | GCWGC | 2 cut(s) | 634, 767 |
| TspDTI | ATGAA | 4 cut(s) | 71, 245, 260, 314 |
| TspGWI | ACGGA | 1 cut(s) | 602 |
| TspRI | CASTG | 1 cut(s) | 590 |
| XapI | RAATTY | 4 cut(s) | 162, 186, 321, 686 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 534 |
| XmiI | GTMKAC | 2 cut(s) | 73, 784 |
| XmnI | GAANNNNTTC | 1 cut(s) | 436 |
| XspI | CTAG | 1 cut(s) | 404 |
| Zsp2I | ATGCAT | 1 cut(s) | 397 |