Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 656 |
| AatII | GACGTC | 1 cut(s) | 21 |
| AccB1I | GGYRCC | 1 cut(s) | 65 |
| AccIII | TCCGGA | 1 cut(s) | 211 |
| AciI | CCGC | 3 cut(s) | 339, 533, 599 |
| AclWI | GGATC | 2 cut(s) | 311, 324 |
| AcyI | GRCGYC | 2 cut(s) | 18, 66 |
| AfaI | GTAC | 2 cut(s) | 268, 622 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 50, 117, 218 |
| AgeI | ACCGGT | 1 cut(s) | 754 |
| AgsI | TTSAA | 3 cut(s) | 242, 645, 876 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 38 |
| AhlI | ACTAGT | 1 cut(s) | 896 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 137, 169 |
| AluBI | AGCT | 2 cut(s) | 392, 971 |
| AluI | AGCT | 2 cut(s) | 392, 971 |
| Alw26I | GTCTC | 1 cut(s) | 201 |
| AlwI | GGATC | 2 cut(s) | 311, 324 |
| Aor13HI | TCCGGA | 1 cut(s) | 211 |
| AoxI | GGCC | 3 cut(s) | 102, 108, 349 |
| ApeKI | GCWGC | 1 cut(s) | 782 |
| AseI | ATTAAT | 1 cut(s) | 579 |
| AsiGI | ACCGGT | 1 cut(s) | 754 |
| AspLEI | GCGC | 1 cut(s) | 68 |
| AspS9I | GGNCC | 1 cut(s) | 109 |
| AsuHPI | GGTGA | 1 cut(s) | 902 |
| AsuII | TTCGAA | 1 cut(s) | 143 |
| BamHI | GGATCC | 1 cut(s) | 316 |
| BanI | GGYRCC | 1 cut(s) | 65 |
| BauI | CACGAG | 1 cut(s) | 714 |
| BbvI | GCAGC | 1 cut(s) | 794 |
| BccI | CCATC | 4 cut(s) | 115, 301, 328, 414 |
| BciVI | GTATCC | 1 cut(s) | 142 |
| BclI | TGATCA | 2 cut(s) | 174, 540 |
| BcoDI | GTCTC | 1 cut(s) | 201 |
| BcuI | ACTAGT | 1 cut(s) | 896 |
| BfaI | CTAG | 7 cut(s) | 117, 134, 330, 393, 486, 734, 897 |
| BfmI | CTRYAG | 2 cut(s) | 295, 766 |
| BfoI | RGCGCY | 1 cut(s) | 69 |
| BfuI | GTATCC | 1 cut(s) | 142 |
| BisI | GCNGC | 2 cut(s) | 339, 783 |
| BlsI | GCNGC | 2 cut(s) | 340, 784 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 1 cut(s) | 109 |
| BmiI | GGNNCC | 4 cut(s) | 67, 111, 318, 744 |
| BmsI | GCATC | 1 cut(s) | 505 |
| Bpu14I | TTCGAA | 1 cut(s) | 143 |
| BpuEI | CTTGAG | 1 cut(s) | 280 |
| BsaAI | YACGTR | 1 cut(s) | 410 |
| BsaBI | GATNNNNATC | 1 cut(s) | 315 |
| BsaHI | GRCGYC | 2 cut(s) | 18, 66 |
| BsaI | GGTCTC | 1 cut(s) | 201 |
| BsaJI | CCNNGG | 1 cut(s) | 105 |
| BsaWI | WCCGGW | 2 cut(s) | 211, 754 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 823, 853 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 50, 117, 218 |
| Bse118I | RCCGGY | 1 cut(s) | 754 |
| Bse1I | ACTGG | 1 cut(s) | 352 |
| Bse8I | GATNNNNATC | 1 cut(s) | 315 |
| BseAI | TCCGGA | 1 cut(s) | 211 |
| BseDI | CCNNGG | 1 cut(s) | 105 |
| BseGI | GGATG | 3 cut(s) | 59, 126, 571 |
| BseJI | GATNNNNATC | 1 cut(s) | 315 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 50, 117, 218 |
| BseMII | CTCAG | 1 cut(s) | 962 |
| BseNI | ACTGG | 1 cut(s) | 352 |
| BseRI | GAGGAG | 4 cut(s) | 489, 492, 495, 735 |
| BseXI | GCAGC | 1 cut(s) | 794 |
| BsgI | GTGCAG | 1 cut(s) | 735 |
| BshFI | GGCC | 3 cut(s) | 104, 110, 351 |
| BshNI | GGYRCC | 1 cut(s) | 65 |
| BshTI | ACCGGT | 1 cut(s) | 754 |
| BsiSI | CCGG | 2 cut(s) | 212, 755 |
| BslFI | GGGAC | 3 cut(s) | 26, 247, 355 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 50, 117, 218 |
| BsmAI | GTCTC | 1 cut(s) | 201 |
| BsmFI | GGGAC | 3 cut(s) | 26, 247, 355 |
| BsnI | GGCC | 3 cut(s) | 104, 110, 351 |
| Bso31I | GGTCTC | 1 cut(s) | 201 |
| Bsp119I | TTCGAA | 1 cut(s) | 143 |
| Bsp13I | TCCGGA | 1 cut(s) | 211 |
| Bsp1407I | TGTACA | 1 cut(s) | 266 |
| Bsp143I | GATC | 3 cut(s) | 174, 316, 540 |
| Bsp19I | CCATGG | 1 cut(s) | 105 |
| BspACI | CCGC | 3 cut(s) | 339, 533, 599 |
| BspANI | GGCC | 3 cut(s) | 104, 110, 351 |
| BspCNI | CTCAG | 1 cut(s) | 961 |
| BspEI | TCCGGA | 1 cut(s) | 211 |
| BspHI | TCATGA | 1 cut(s) | 199 |
| BspLI | GGNNCC | 4 cut(s) | 67, 111, 318, 744 |
| BspPI | GGATC | 2 cut(s) | 311, 324 |
| BspT104I | TTCGAA | 1 cut(s) | 143 |
| BspT107I | GGYRCC | 1 cut(s) | 65 |
| BspTNI | GGTCTC | 1 cut(s) | 201 |
| BsrFI | RCCGGY | 1 cut(s) | 754 |
| BsrGI | TGTACA | 1 cut(s) | 266 |
| BsrI | ACTGG | 1 cut(s) | 352 |
| BssAI | RCCGGY | 1 cut(s) | 754 |
| BssECI | CCNNGG | 1 cut(s) | 105 |
| BssMI | GATC | 3 cut(s) | 174, 316, 540 |
| BssNI | GRCGYC | 2 cut(s) | 18, 66 |
| BssSI | CACGAG | 1 cut(s) | 714 |
| BssT1I | CCWWGG | 1 cut(s) | 105 |
| Bst2BI | CACGAG | 1 cut(s) | 714 |
| Bst4CI | ACNGT | 1 cut(s) | 400 |
| BstACI | GRCGYC | 2 cut(s) | 18, 66 |
| BstAUI | TGTACA | 1 cut(s) | 266 |
| BstBAI | YACGTR | 1 cut(s) | 410 |
| BstBI | TTCGAA | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 353, 467, 795 |
| BstDEI | CTNAG | 2 cut(s) | 948, 972 |
| BstDSI | CCRYGG | 1 cut(s) | 105 |
| BstF5I | GGATG | 3 cut(s) | 59, 126, 571 |
| BstH2I | RGCGCY | 1 cut(s) | 69 |
| BstHHI | GCGC | 1 cut(s) | 68 |
| BstKTI | GATC | 3 cut(s) | 177, 319, 543 |
| BstMAI | GTCTC | 1 cut(s) | 201 |
| BstMBI | GATC | 3 cut(s) | 174, 316, 540 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 101, 749, 824 |
| BstNSI | RCATGY | 1 cut(s) | 797 |
| BstSFI | CTRYAG | 2 cut(s) | 295, 766 |
| BstV1I | GCAGC | 1 cut(s) | 794 |
| BstX2I | RGATCY | 1 cut(s) | 316 |
| BstYI | RGATCY | 1 cut(s) | 316 |
| BsuI | GTATCC | 1 cut(s) | 142 |
| BsuRI | GGCC | 3 cut(s) | 104, 110, 351 |
| BtgI | CCRYGG | 1 cut(s) | 105 |
| BtgZI | GCGATG | 1 cut(s) | 528 |
| BtsCI | GGATG | 3 cut(s) | 59, 126, 571 |
| BtsIMutI | CAGTG | 3 cut(s) | 345, 590, 956 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 353, 467, 795 |
| CciI | TCATGA | 1 cut(s) | 199 |
| CfoI | GCGC | 1 cut(s) | 68 |
| Cfr10I | RCCGGY | 1 cut(s) | 754 |
| Cfr13I | GGNCC | 1 cut(s) | 109 |
| CseI | GACGC | 3 cut(s) | 28, 244, 344 |
| Csp6I | GTAC | 2 cut(s) | 267, 621 |
| CspAI | ACCGGT | 1 cut(s) | 754 |
| CviAII | CATG | 6 cut(s) | 50, 62, 106, 200, 794, 824 |
| CviQI | GTAC | 2 cut(s) | 267, 621 |
| DdeI | CTNAG | 2 cut(s) | 948, 972 |
| DinI | GGCGCC | 1 cut(s) | 67 |
| DpnI | GATC | 3 cut(s) | 176, 318, 542 |
| DpnII | GATC | 3 cut(s) | 174, 316, 540 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 656 |
| DriI | GACNNNNNGTC | 1 cut(s) | 38 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 656 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 1 cut(s) | 105 |
| Eco31I | GGTCTC | 1 cut(s) | 201 |
| EcoT14I | CCWWGG | 1 cut(s) | 105 |
| EgeI | GGCGCC | 1 cut(s) | 67 |
| EheI | GGCGCC | 1 cut(s) | 67 |
| ErhI | CCWWGG | 1 cut(s) | 105 |
| FaeI | CATG | 6 cut(s) | 53, 65, 109, 203, 797, 827 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 37 |
| FaqI | GGGAC | 3 cut(s) | 26, 247, 355 |
| FatI | CATG | 6 cut(s) | 49, 61, 105, 199, 793, 823 |
| FbaI | TGATCA | 2 cut(s) | 174, 540 |
| Fnu4HI | GCNGC | 2 cut(s) | 339, 783 |
| FokI | GGATG | 3 cut(s) | 66, 133, 578 |
| Fsp4HI | GCNGC | 2 cut(s) | 339, 783 |
| FspBI | CTAG | 7 cut(s) | 117, 134, 330, 393, 486, 734, 897 |
| GlaI | GCGC | 1 cut(s) | 67 |
| GluI | GCNGC | 2 cut(s) | 339, 783 |
| HaeII | RGCGCY | 1 cut(s) | 69 |
| HaeIII | GGCC | 3 cut(s) | 104, 110, 351 |
| HapII | CCGG | 2 cut(s) | 212, 755 |
| HgaI | GACGC | 3 cut(s) | 28, 244, 344 |
| HhaI | GCGC | 1 cut(s) | 68 |
| Hin1I | GRCGYC | 2 cut(s) | 18, 66 |
| Hin1II | CATG | 6 cut(s) | 53, 65, 109, 203, 797, 827 |
| Hin6I | GCGC | 1 cut(s) | 66 |
| HinP1I | GCGC | 1 cut(s) | 66 |
| HincII | GTYRAC | 1 cut(s) | 760 |
| HindII | GTYRAC | 1 cut(s) | 760 |
| HindIII | AAGCTT | 1 cut(s) | 969 |
| HinfI | GANTC | 3 cut(s) | 184, 440, 476 |
| HpaII | CCGG | 2 cut(s) | 212, 755 |
| HphI | GGTGA | 1 cut(s) | 902 |
| Hpy166II | GTNNAC | 4 cut(s) | 359, 591, 760, 937 |
| Hpy188III | TCNNGA | 4 cut(s) | 181, 200, 212, 716 |
| Hpy8I | GTNNAC | 4 cut(s) | 359, 591, 760, 937 |
| Hpy99I | CGWCG | 1 cut(s) | 639 |
| HpyAV | CCTTC | 4 cut(s) | 7, 139, 504, 670 |
| HpyCH4III | ACNGT | 1 cut(s) | 400 |
| HpyCH4IV | ACGT | 3 cut(s) | 18, 379, 409 |
| HpyCH4V | TGCA | 3 cut(s) | 8, 701, 752 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 101, 749, 824 |
| HpyF3I | CTNAG | 2 cut(s) | 948, 972 |
| HpySE526I | ACGT | 3 cut(s) | 18, 379, 409 |
| Hsp92I | GRCGYC | 2 cut(s) | 18, 66 |
| Hsp92II | CATG | 6 cut(s) | 53, 65, 109, 203, 797, 827 |
| HspAI | GCGC | 1 cut(s) | 66 |
| KasI | GGCGCC | 1 cut(s) | 65 |
| Kpn2I | TCCGGA | 1 cut(s) | 211 |
| Ksp22I | TGATCA | 2 cut(s) | 174, 540 |
| Kzo9I | GATC | 3 cut(s) | 174, 316, 540 |
| LmnI | GCTCC | 2 cut(s) | 523, 748 |
| Lsp1109I | GCAGC | 1 cut(s) | 794 |
| LweI | GCATC | 1 cut(s) | 505 |
| MaeI | CTAG | 7 cut(s) | 117, 134, 330, 393, 486, 734, 897 |
| MaeII | ACGT | 3 cut(s) | 18, 379, 409 |
| MaeIII | GTNAC | 5 cut(s) | 83, 96, 431, 890, 911 |
| MalI | GATC | 3 cut(s) | 176, 318, 542 |
| MboI | GATC | 3 cut(s) | 174, 316, 540 |
| MboII | GAAGA | 1 cut(s) | 200 |
| MfeI | CAATTG | 1 cut(s) | 270 |
| MflI | RGATCY | 1 cut(s) | 316 |
| MluCI | AATT | 5 cut(s) | 270, 414, 426, 576, 612 |
| Mly113I | GGCGCC | 1 cut(s) | 66 |
| MlyI | GAGTC | 2 cut(s) | 178, 449 |
| MmeI | TCCRAC | 1 cut(s) | 550 |
| MnlI | CCTC | 8 cut(s) | 23, 123, 376, 510, 513, 516, 756, 825 |
| MroI | TCCGGA | 1 cut(s) | 211 |
| MseI | TTAA | 2 cut(s) | 579, 611 |
| MspA1I | CMGCKG | 1 cut(s) | 599 |
| MspI | CCGG | 2 cut(s) | 212, 755 |
| MunI | CAATTG | 1 cut(s) | 270 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 101, 749, 824 |
| NarI | GGCGCC | 1 cut(s) | 66 |
| NcoI | CCATGG | 1 cut(s) | 105 |
| NdeII | GATC | 3 cut(s) | 174, 316, 540 |
| NlaIII | CATG | 6 cut(s) | 53, 65, 109, 203, 797, 827 |
| NlaIV | GGNNCC | 4 cut(s) | 67, 111, 318, 744 |
| NmuCI | GTSAC | 2 cut(s) | 83, 890 |
| NspI | RCATGY | 1 cut(s) | 797 |
| NspV | TTCGAA | 1 cut(s) | 143 |
| PaeI | GCATGC | 1 cut(s) | 797 |
| PagI | TCATGA | 1 cut(s) | 199 |
| PfeI | GAWTC | 1 cut(s) | 476 |
| PinAI | ACCGGT | 1 cut(s) | 754 |
| PkrI | GCNGC | 2 cut(s) | 340, 784 |
| PleI | GAGTC | 2 cut(s) | 178, 448 |
| PluTI | GGCGCC | 1 cut(s) | 69 |
| PpsI | GAGTC | 2 cut(s) | 178, 448 |
| Ppu21I | YACGTR | 1 cut(s) | 410 |
| PshBI | ATTAAT | 1 cut(s) | 579 |
| PspN4I | GGNNCC | 4 cut(s) | 67, 111, 318, 744 |
| PspPI | GGNCC | 1 cut(s) | 109 |
| PsuI | RGATCY | 1 cut(s) | 316 |
| RsaI | GTAC | 2 cut(s) | 268, 622 |
| RsaNI | GTAC | 2 cut(s) | 267, 621 |
| SaqAI | TTAA | 2 cut(s) | 579, 611 |
| SatI | GCNGC | 2 cut(s) | 339, 783 |
| Sau3AI | GATC | 3 cut(s) | 174, 316, 540 |
| Sau96I | GGNCC | 1 cut(s) | 109 |
| SchI | GAGTC | 2 cut(s) | 178, 449 |
| SetI | ASST | 9 cut(s) | 21, 382, 394, 412, 475, 531, 656, 836, 973 |
| SfaNI | GCATC | 1 cut(s) | 505 |
| SfcI | CTRYAG | 2 cut(s) | 295, 766 |
| SfoI | GGCGCC | 1 cut(s) | 67 |
| SfuI | TTCGAA | 1 cut(s) | 143 |
| SmlI | CTYRAG | 1 cut(s) | 259 |
| SmoI | CTYRAG | 1 cut(s) | 259 |
| SpeI | ACTAGT | 1 cut(s) | 896 |
| SphI | GCATGC | 1 cut(s) | 797 |
| Sse9I | AATT | 5 cut(s) | 270, 414, 426, 576, 612 |
| SsiI | CCGC | 3 cut(s) | 339, 533, 599 |
| SspDI | GGCGCC | 1 cut(s) | 65 |
| SspMI | CTAG | 7 cut(s) | 117, 134, 330, 393, 486, 734, 897 |
| StyI | CCWWGG | 1 cut(s) | 105 |
| TaaI | ACNGT | 1 cut(s) | 400 |
| TaiI | ACGT | 3 cut(s) | 21, 382, 412 |
| TaqI | TCGA | 3 cut(s) | 143, 253, 447 |
| TaqII | GACCGA | 1 cut(s) | 183 |
| TasI | AATT | 5 cut(s) | 270, 414, 426, 576, 612 |
| TatI | WGTACW | 1 cut(s) | 266 |
| TauI | GCSGC | 1 cut(s) | 341 |
| TfiI | GAWTC | 1 cut(s) | 476 |
| Tru1I | TTAA | 2 cut(s) | 579, 611 |
| Tru9I | TTAA | 2 cut(s) | 579, 611 |
| TscAI | CASTG | 3 cut(s) | 352, 590, 956 |
| TseFI | GTSAC | 2 cut(s) | 83, 890 |
| TseI | GCWGC | 1 cut(s) | 782 |
| Tsp45I | GTSAC | 2 cut(s) | 83, 890 |
| TspDTI | ATGAA | 1 cut(s) | 659 |
| TspRI | CASTG | 3 cut(s) | 352, 590, 956 |
| VspI | ATTAAT | 1 cut(s) | 579 |
| XceI | RCATGY | 1 cut(s) | 797 |
| XspI | CTAG | 7 cut(s) | 117, 134, 330, 393, 486, 734, 897 |
| ZraI | GACGTC | 1 cut(s) | 19 |