Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1518 |
| Acc36I | ACCTGC | 1 cut(s) | 1234 |
| AccB1I | GGYRCC | 1 cut(s) | 12 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1330, 2022 |
| AccBSI | CCGCTC | 1 cut(s) | 418 |
| AccII | CGCG | 1 cut(s) | 580 |
| AccIII | TCCGGA | 1 cut(s) | 706 |
| AciI | CCGC | 3 cut(s) | 87, 418, 575 |
| AclWI | GGATC | 4 cut(s) | 618, 978, 1274, 1785 |
| AcoI | YGGCCR | 1 cut(s) | 397 |
| AcsI | RAATTY | 3 cut(s) | 136, 783, 1200 |
| AcuI | CTGAAG | 1 cut(s) | 750 |
| AcyI | GRCGYC | 1 cut(s) | 13 |
| AfaI | GTAC | 5 cut(s) | 113, 636, 793, 1447, 1859 |
| AflIII | ACRYGT | 1 cut(s) | 1646 |
| AgeI | ACCGGT | 1 cut(s) | 1700 |
| AgsI | TTSAA | 6 cut(s) | 218, 679, 925, 1460, 1847, 2072 |
| AjnI | CCWGG | 2 cut(s) | 500, 1505 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1633, 1665 |
| Alw21I | GWGCWC | 2 cut(s) | 838, 1609 |
| Alw26I | GTCTC | 4 cut(s) | 495, 648, 771, 1391 |
| Alw44I | GTGCAC | 2 cut(s) | 834, 1605 |
| AlwI | GGATC | 4 cut(s) | 618, 978, 1274, 1785 |
| Ama87I | CYCGRG | 1 cut(s) | 1054 |
| Aor13HI | TCCGGA | 1 cut(s) | 706 |
| AoxI | GGCC | 5 cut(s) | 45, 397, 1050, 1057, 1295 |
| ApaI | GGGCCC | 1 cut(s) | 1061 |
| ApaLI | GTGCAC | 2 cut(s) | 834, 1605 |
| ApeKI | GCWGC | 7 cut(s) | 125, 196, 442, 871, 1160, 1418, 2219 |
| ApoI | RAATTY | 3 cut(s) | 136, 783, 1200 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1302, 1334, 1751, 1783 |
| AseI | ATTAAT | 1 cut(s) | 1833 |
| AsiGI | ACCGGT | 1 cut(s) | 1700 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1204, 1790 |
| AspLEI | GCGC | 3 cut(s) | 15, 125, 580 |
| AspS9I | GGNCC | 7 cut(s) | 46, 433, 961, 1051, 1057, 1058, 1257 |
| AsuC2I | CCSGG | 2 cut(s) | 1055, 1056 |
| AsuHPI | GGTGA | 5 cut(s) | 1357, 1690, 1715, 1933, 1958 |
| AsuII | TTCGAA | 2 cut(s) | 238, 664 |
| AvaI | CYCGRG | 1 cut(s) | 1054 |
| AvaII | GGWCC | 3 cut(s) | 433, 961, 1257 |
| AxyI | CCTNAGG | 1 cut(s) | 648 |
| BaeGI | GKGCMC | 3 cut(s) | 838, 1061, 1609 |
| BanI | GGYRCC | 1 cut(s) | 12 |
| BanII | GRGCYC | 1 cut(s) | 1061 |
| Bbv12I | GWGCWC | 2 cut(s) | 838, 1609 |
| BbvCI | CCTCAGC | 1 cut(s) | 957 |
| BbvI | GCAGC | 7 cut(s) | 137, 183, 429, 858, 1147, 1405, 2231 |
| BccI | CCATC | 6 cut(s) | 353, 408, 1233, 1700, 2016, 2055 |
| BceAI | ACGGC | 2 cut(s) | 304, 412 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1397, 1431 |
| BciT130I | CCWGG | 2 cut(s) | 502, 1507 |
| BciVI | GTATCC | 2 cut(s) | 768, 1050 |
| BcnI | CCSGG | 2 cut(s) | 1055, 1056 |
| BcoDI | GTCTC | 4 cut(s) | 495, 648, 771, 1391 |
| BfaI | CTAG | 5 cut(s) | 302, 638, 1395, 1563, 1802 |
| BfmI | CTRYAG | 1 cut(s) | 872 |
| BfoI | RGCGCY | 1 cut(s) | 16 |
| BfuAI | ACCTGC | 1 cut(s) | 1234 |
| BfuI | GTATCC | 2 cut(s) | 768, 1050 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 10 |
| BglII | AGATCT | 1 cut(s) | 886 |
| BisI | GCNGC | 9 cut(s) | 126, 197, 419, 443, 576, 872, 1161, 1419, 2220 |
| BlsI | GCNGC | 9 cut(s) | 127, 198, 420, 444, 577, 873, 1162, 1420, 2221 |
| BmcAI | AGTACT | 2 cut(s) | 793, 1447 |
| Bme1390I | CCNGG | 4 cut(s) | 502, 1055, 1056, 1507 |
| Bme18I | GGWCC | 3 cut(s) | 433, 961, 1257 |
| BmeT110I | CYCGRG | 1 cut(s) | 1054 |
| BmgT120I | GGNCC | 7 cut(s) | 46, 433, 961, 1051, 1057, 1058, 1257 |
| BmiI | GGNNCC | 7 cut(s) | 14, 48, 434, 1053, 1059, 1258, 1335 |
| BmrFI | CCNGG | 4 cut(s) | 502, 1055, 1056, 1507 |
| BmsI | GCATC | 3 cut(s) | 430, 1405, 1600 |
| BpmI | CTGGAG | 2 cut(s) | 397, 1791 |
| Bpu10I | CCTNAGC | 2 cut(s) | 903, 957 |
| Bpu14I | TTCGAA | 2 cut(s) | 238, 664 |
| BpuEI | CTTGAG | 1 cut(s) | 753 |
| BpuMI | CCSGG | 2 cut(s) | 1055, 1056 |
| BsaHI | GRCGYC | 1 cut(s) | 13 |
| BsaI | GGTCTC | 3 cut(s) | 495, 648, 1391 |
| BsaJI | CCNNGG | 6 cut(s) | 987, 1053, 1054, 1283, 1292, 2177 |
| BsaWI | WCCGGW | 3 cut(s) | 706, 1700, 1914 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1162, 1192 |
| Bse118I | RCCGGY | 4 cut(s) | 9, 1700, 1943, 1968 |
| Bse1I | ACTGG | 2 cut(s) | 248, 1610 |
| Bse21I | CCTNAGG | 1 cut(s) | 648 |
| Bse3DI | GCAATG | 1 cut(s) | 2214 |
| BseAI | TCCGGA | 1 cut(s) | 706 |
| BseBI | CCWGG | 2 cut(s) | 502, 1507 |
| BseDI | CCNNGG | 6 cut(s) | 987, 1053, 1054, 1283, 1292, 2177 |
| BseGI | GGATG | 5 cut(s) | 400, 703, 1156, 1417, 2152 |
| BseMI | GCAATG | 1 cut(s) | 2214 |
| BseMII | CTCAG | 7 cut(s) | 662, 802, 894, 948, 1178, 1740, 1809 |
| BseNI | ACTGG | 2 cut(s) | 248, 1610 |
| BseRI | GAGGAG | 3 cut(s) | 636, 1908, 2012 |
| BseSI | GKGCMC | 3 cut(s) | 838, 1061, 1609 |
| BseXI | GCAGC | 7 cut(s) | 137, 183, 429, 858, 1147, 1405, 2231 |
| BseYI | CCCAGC | 1 cut(s) | 1183 |
| BsgI | GTGCAG | 2 cut(s) | 182, 1404 |
| Bsh1236I | CGCG | 1 cut(s) | 580 |
| BshFI | GGCC | 5 cut(s) | 47, 399, 1052, 1059, 1297 |
| BshNI | GGYRCC | 1 cut(s) | 12 |
| BshTI | ACCGGT | 1 cut(s) | 1700 |
| BsiHKAI | GWGCWC | 2 cut(s) | 838, 1609 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1054 |
| BsiSI | CCGG | 8 cut(s) | 10, 32, 707, 1055, 1701, 1915, 1944, 1969 |
| BslFI | GGGAC | 2 cut(s) | 446, 891 |
| BsmAI | GTCTC | 4 cut(s) | 495, 648, 771, 1391 |
| BsmFI | GGGAC | 2 cut(s) | 446, 891 |
| BsnI | GGCC | 5 cut(s) | 47, 399, 1052, 1059, 1297 |
| Bso31I | GGTCTC | 3 cut(s) | 495, 648, 1391 |
| BsoBI | CYCGRG | 1 cut(s) | 1054 |
| Bsp119I | TTCGAA | 2 cut(s) | 238, 664 |
| Bsp120I | GGGCCC | 1 cut(s) | 1057 |
| Bsp1286I | GDGCHC | 3 cut(s) | 838, 1061, 1609 |
| Bsp13I | TCCGGA | 1 cut(s) | 706 |
| Bsp143I | GATC | 8 cut(s) | 314, 454, 610, 886, 983, 1279, 1777, 2107 |
| Bsp19I | CCATGG | 2 cut(s) | 1283, 2177 |
| BspACI | CCGC | 3 cut(s) | 87, 418, 575 |
| BspANI | GGCC | 5 cut(s) | 47, 399, 1052, 1059, 1297 |
| BspCNI | CTCAG | 7 cut(s) | 661, 801, 895, 949, 1177, 1739, 1810 |
| BspEI | TCCGGA | 1 cut(s) | 706 |
| BspFNI | CGCG | 1 cut(s) | 580 |
| BspLI | GGNNCC | 7 cut(s) | 14, 48, 434, 1053, 1059, 1258, 1335 |
| BspMAI | CTGCAG | 1 cut(s) | 876 |
| BspMI | ACCTGC | 1 cut(s) | 1234 |
| BspPI | GGATC | 4 cut(s) | 618, 978, 1274, 1785 |
| BspQI | GCTCTTC | 1 cut(s) | 666 |
| BspT104I | TTCGAA | 2 cut(s) | 238, 664 |
| BspT107I | GGYRCC | 1 cut(s) | 12 |
| BspTNI | GGTCTC | 3 cut(s) | 495, 648, 1391 |
| BsrBI | CCGCTC | 1 cut(s) | 418 |
| BsrDI | GCAATG | 1 cut(s) | 2214 |
| BsrFI | RCCGGY | 4 cut(s) | 9, 1700, 1943, 1968 |
| BsrI | ACTGG | 2 cut(s) | 248, 1610 |
| BssAI | RCCGGY | 4 cut(s) | 9, 1700, 1943, 1968 |
| BssECI | CCNNGG | 6 cut(s) | 987, 1053, 1054, 1283, 1292, 2177 |
| BssMI | GATC | 8 cut(s) | 314, 454, 610, 886, 983, 1279, 1777, 2107 |
| BssNI | GRCGYC | 1 cut(s) | 13 |
| BssT1I | CCWWGG | 3 cut(s) | 987, 1283, 2177 |
| Bst2UI | CCWGG | 2 cut(s) | 502, 1507 |
| Bst4CI | ACNGT | 7 cut(s) | 412, 949, 1092, 1314, 1431, 1763, 1862 |
| Bst6I | CTCTTC | 2 cut(s) | 230, 666 |
| BstACI | GRCGYC | 1 cut(s) | 13 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2173 |
| BstBI | TTCGAA | 2 cut(s) | 238, 664 |
| BstC8I | GCNNGC | 8 cut(s) | 11, 130, 1524, 1605, 1617, 1907, 2017, 2232 |
| BstDSI | CCRYGG | 2 cut(s) | 1283, 2177 |
| BstF5I | GGATG | 5 cut(s) | 400, 703, 1156, 1417, 2152 |
| BstFNI | CGCG | 1 cut(s) | 580 |
| BstH2I | RGCGCY | 1 cut(s) | 16 |
| BstHHI | GCGC | 3 cut(s) | 15, 125, 580 |
| BstKTI | GATC | 8 cut(s) | 317, 457, 613, 889, 986, 1282, 1780, 2110 |
| BstMAI | GTCTC | 4 cut(s) | 495, 648, 771, 1391 |
| BstMBI | GATC | 8 cut(s) | 314, 454, 610, 886, 983, 1279, 1777, 2107 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 10, 129, 396, 551, 1474, 2173, 2189 |
| BstNI | CCWGG | 2 cut(s) | 502, 1507 |
| BstNSI | RCATGY | 4 cut(s) | 1072, 1304, 1650, 2031 |
| BstSCI | CCNGG | 4 cut(s) | 500, 1053, 1054, 1505 |
| BstSFI | CTRYAG | 1 cut(s) | 872 |
| BstSLI | GKGCMC | 3 cut(s) | 838, 1061, 1609 |
| BstUI | CGCG | 1 cut(s) | 580 |
| BstV1I | GCAGC | 7 cut(s) | 137, 183, 429, 858, 1147, 1405, 2231 |
| BstX2I | RGATCY | 3 cut(s) | 886, 983, 1777 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1191 |
| BstYI | RGATCY | 3 cut(s) | 886, 983, 1777 |
| Bsu36I | CCTNAGG | 1 cut(s) | 648 |
| BsuI | GTATCC | 2 cut(s) | 768, 1050 |
| BsuRI | GGCC | 5 cut(s) | 47, 399, 1052, 1059, 1297 |
| BtgI | CCRYGG | 2 cut(s) | 1283, 2177 |
| BtsCI | GGATG | 5 cut(s) | 400, 703, 1156, 1417, 2152 |
| BtsI | GCAGTG | 1 cut(s) | 464 |
| BtsIMutI | CAGTG | 3 cut(s) | 255, 464, 1617 |
| BveI | ACCTGC | 1 cut(s) | 1234 |
| Cac8I | GCNNGC | 8 cut(s) | 11, 130, 1524, 1605, 1617, 1907, 2017, 2232 |
| CfoI | GCGC | 3 cut(s) | 15, 125, 580 |
| Cfr10I | RCCGGY | 4 cut(s) | 9, 1700, 1943, 1968 |
| Cfr13I | GGNCC | 7 cut(s) | 46, 433, 961, 1051, 1057, 1058, 1257 |
| Cfr9I | CCCGGG | 1 cut(s) | 1054 |
| Csp6I | GTAC | 5 cut(s) | 112, 635, 792, 1446, 1858 |
| CspAI | ACCGGT | 1 cut(s) | 1700 |
| CviQI | GTAC | 5 cut(s) | 112, 635, 792, 1446, 1858 |
| DinI | GGCGCC | 1 cut(s) | 14 |
| DpnI | GATC | 8 cut(s) | 316, 456, 612, 888, 985, 1281, 1779, 2109 |
| DpnII | GATC | 8 cut(s) | 314, 454, 610, 886, 983, 1279, 1777, 2107 |
| DraI | TTTAAA | 1 cut(s) | 1224 |
| EaeI | YGGCCR | 1 cut(s) | 397 |
| Eam1104I | CTCTTC | 2 cut(s) | 230, 666 |
| EarI | CTCTTC | 2 cut(s) | 230, 666 |
| Eco130I | CCWWGG | 3 cut(s) | 987, 1283, 2177 |
| Eco24I | GRGCYC | 1 cut(s) | 1061 |
| Eco31I | GGTCTC | 3 cut(s) | 495, 648, 1391 |
| Eco47I | GGWCC | 3 cut(s) | 433, 961, 1257 |
| Eco57I | CTGAAG | 1 cut(s) | 750 |
| Eco81I | CCTNAGG | 1 cut(s) | 648 |
| Eco88I | CYCGRG | 1 cut(s) | 1054 |
| EcoO109I | RGGNCCY | 4 cut(s) | 46, 433, 1051, 1257 |
| EcoRI | GAATTC | 1 cut(s) | 783 |
| EcoRII | CCWGG | 2 cut(s) | 500, 1505 |
| EcoT14I | CCWWGG | 3 cut(s) | 987, 1283, 2177 |
| EcoT38I | GRGCYC | 1 cut(s) | 1061 |
| EgeI | GGCGCC | 1 cut(s) | 14 |
| EheI | GGCGCC | 1 cut(s) | 14 |
| ErhI | CCWWGG | 3 cut(s) | 987, 1283, 2177 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1511, 1543 |
| FaqI | GGGAC | 2 cut(s) | 446, 891 |
| FauNDI | CATATG | 2 cut(s) | 52, 95 |
| Fnu4HI | GCNGC | 9 cut(s) | 126, 197, 419, 443, 576, 872, 1161, 1419, 2220 |
| FokI | GGATG | 5 cut(s) | 387, 690, 1163, 1424, 2159 |
| FriOI | GRGCYC | 1 cut(s) | 1061 |
| Fsp4HI | GCNGC | 9 cut(s) | 126, 197, 419, 443, 576, 872, 1161, 1419, 2220 |
| FspBI | CTAG | 5 cut(s) | 302, 638, 1395, 1563, 1802 |
| GlaI | GCGC | 3 cut(s) | 14, 124, 579 |
| GluI | GCNGC | 9 cut(s) | 126, 197, 419, 443, 576, 872, 1161, 1419, 2220 |
| GsaI | CCCAGC | 1 cut(s) | 1187 |
| GsuI | CTGGAG | 2 cut(s) | 397, 1791 |
| HaeII | RGCGCY | 1 cut(s) | 16 |
| HaeIII | GGCC | 5 cut(s) | 47, 399, 1052, 1059, 1297 |
| HapII | CCGG | 8 cut(s) | 10, 32, 707, 1055, 1701, 1915, 1944, 1969 |
| HhaI | GCGC | 3 cut(s) | 15, 125, 580 |
| Hin1I | GRCGYC | 1 cut(s) | 13 |
| Hin6I | GCGC | 3 cut(s) | 13, 123, 578 |
| HinP1I | GCGC | 3 cut(s) | 13, 123, 578 |
| HincII | GTYRAC | 3 cut(s) | 384, 1002, 2055 |
| HindII | GTYRAC | 3 cut(s) | 384, 1002, 2055 |
| HindIII | AAGCTT | 3 cut(s) | 1520, 1787, 2228 |
| HpaI | GTTAAC | 2 cut(s) | 384, 1002 |
| HpaII | CCGG | 8 cut(s) | 10, 32, 707, 1055, 1701, 1915, 1944, 1969 |
| HphI | GGTGA | 5 cut(s) | 1357, 1690, 1715, 1933, 1958 |
| Hpy166II | GTNNAC | 7 cut(s) | 384, 570, 836, 1002, 1607, 1858, 2055 |
| Hpy188III | TCNNGA | 6 cut(s) | 215, 302, 707, 914, 1273, 2005 |
| Hpy8I | GTNNAC | 7 cut(s) | 384, 570, 836, 1002, 1607, 1858, 2055 |
| Hpy99I | CGWCG | 3 cut(s) | 149, 282, 290 |
| HpyAV | CCTTC | 8 cut(s) | 113, 446, 499, 725, 1083, 1342, 1483, 1912 |
| HpyCH4III | ACNGT | 7 cut(s) | 412, 949, 1092, 1314, 1431, 1763, 1862 |
| HpyCH4IV | ACGT | 3 cut(s) | 147, 339, 1756 |
| HpyCH4V | TGCA | 8 cut(s) | 199, 445, 836, 874, 1421, 1607, 2167, 2219 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 10, 129, 396, 551, 1474, 2173, 2189 |
| HpySE526I | ACGT | 3 cut(s) | 147, 339, 1756 |
| Hsp92I | GRCGYC | 1 cut(s) | 13 |
| HspAI | GCGC | 3 cut(s) | 13, 123, 578 |
| KasI | GGCGCC | 1 cut(s) | 12 |
| Kpn2I | TCCGGA | 1 cut(s) | 706 |
| KroI | GCCGGC | 1 cut(s) | 9 |
| KroNI | GCCGGC | 1 cut(s) | 11 |
| KspAI | GTTAAC | 2 cut(s) | 384, 1002 |
| Kzo9I | GATC | 8 cut(s) | 314, 454, 610, 886, 983, 1279, 1777, 2107 |
| LguI | GCTCTTC | 1 cut(s) | 666 |
| LmnI | GCTCC | 2 cut(s) | 601, 1810 |
| Lsp1109I | GCAGC | 7 cut(s) | 137, 183, 429, 858, 1147, 1405, 2231 |
| LweI | GCATC | 3 cut(s) | 430, 1405, 1600 |
| MaeI | CTAG | 5 cut(s) | 302, 638, 1395, 1563, 1802 |
| MaeII | ACGT | 3 cut(s) | 147, 339, 1756 |
| MaeIII | GTNAC | 7 cut(s) | 583, 1117, 1579, 1721, 1757, 2041, 2124 |
| MalI | GATC | 8 cut(s) | 316, 456, 612, 888, 985, 1281, 1779, 2109 |
| MbiI | CCGCTC | 1 cut(s) | 418 |
| MboI | GATC | 8 cut(s) | 314, 454, 610, 886, 983, 1279, 1777, 2107 |
| MboII | GAAGA | 6 cut(s) | 65, 217, 307, 653, 1352, 1745 |
| MfeI | CAATTG | 3 cut(s) | 101, 446, 2033 |
| MflI | RGATCY | 3 cut(s) | 886, 983, 1777 |
| MhlI | GDGCHC | 3 cut(s) | 838, 1061, 1609 |
| MluCI | AATT | 8 cut(s) | 101, 136, 151, 262, 446, 783, 1200, 2033 |
| Mly113I | GGCGCC | 1 cut(s) | 13 |
| MlyI | GAGTC | 3 cut(s) | 591, 1905, 2050 |
| MmeI | TCCRAC | 5 cut(s) | 207, 428, 1067, 1111, 1172 |
| MroI | TCCGGA | 1 cut(s) | 706 |
| MroNI | GCCGGC | 1 cut(s) | 9 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1204, 1790 |
| MseI | TTAA | 7 cut(s) | 150, 383, 807, 1001, 1215, 1223, 1833 |
| MslI | CAYNNNNRTG | 3 cut(s) | 354, 469, 1545 |
| MspA1I | CMGCKG | 1 cut(s) | 575 |
| MspI | CCGG | 8 cut(s) | 10, 32, 707, 1055, 1701, 1915, 1944, 1969 |
| MspR9I | CCNGG | 4 cut(s) | 502, 1055, 1056, 1507 |
| MunI | CAATTG | 3 cut(s) | 101, 446, 2033 |
| MvaI | CCWGG | 2 cut(s) | 502, 1507 |
| MvnI | CGCG | 1 cut(s) | 580 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 10, 129, 396, 551, 1474, 2173, 2189 |
| NaeI | GCCGGC | 1 cut(s) | 11 |
| NarI | GGCGCC | 1 cut(s) | 13 |
| NciI | CCSGG | 2 cut(s) | 1055, 1056 |
| NcoI | CCATGG | 2 cut(s) | 1283, 2177 |
| NdeI | CATATG | 2 cut(s) | 52, 95 |
| NdeII | GATC | 8 cut(s) | 314, 454, 610, 886, 983, 1279, 1777, 2107 |
| NgoMIV | GCCGGC | 1 cut(s) | 9 |
| NlaIV | GGNNCC | 7 cut(s) | 14, 48, 434, 1053, 1059, 1258, 1335 |
| NmuCI | GTSAC | 4 cut(s) | 583, 1117, 1757, 2124 |
| NspI | RCATGY | 4 cut(s) | 1072, 1304, 1650, 2031 |
| NspV | TTCGAA | 2 cut(s) | 238, 664 |
| PciI | ACATGT | 1 cut(s) | 1646 |
| PciSI | GCTCTTC | 1 cut(s) | 666 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1600 |
| PdiI | GCCGGC | 1 cut(s) | 11 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1204, 1790 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1330, 2022 |
| PinAI | ACCGGT | 1 cut(s) | 1700 |
| PkrI | GCNGC | 9 cut(s) | 127, 198, 420, 444, 577, 873, 1162, 1420, 2221 |
| PleI | GAGTC | 3 cut(s) | 590, 1904, 2050 |
| PluTI | GGCGCC | 1 cut(s) | 16 |
| PpsI | GAGTC | 3 cut(s) | 590, 1904, 2050 |
| PpuMI | RGGWCCY | 2 cut(s) | 433, 1257 |
| PscI | ACATGT | 1 cut(s) | 1646 |
| PshBI | ATTAAT | 1 cut(s) | 1833 |
| PsiI | TTATAA | 1 cut(s) | 1518 |
| Psp5II | RGGWCCY | 2 cut(s) | 433, 1257 |
| Psp6I | CCWGG | 2 cut(s) | 500, 1505 |
| PspFI | CCCAGC | 1 cut(s) | 1183 |
| PspGI | CCWGG | 2 cut(s) | 500, 1505 |
| PspN4I | GGNNCC | 7 cut(s) | 14, 48, 434, 1053, 1059, 1258, 1335 |
| PspOMI | GGGCCC | 1 cut(s) | 1057 |
| PspPI | GGNCC | 7 cut(s) | 46, 433, 961, 1051, 1057, 1058, 1257 |
| PspPPI | RGGWCCY | 2 cut(s) | 433, 1257 |
| PstI | CTGCAG | 1 cut(s) | 876 |
| PsuI | RGATCY | 3 cut(s) | 886, 983, 1777 |
| RsaI | GTAC | 5 cut(s) | 113, 636, 793, 1447, 1859 |
| RsaNI | GTAC | 5 cut(s) | 112, 635, 792, 1446, 1858 |
| RseI | CAYNNNNRTG | 3 cut(s) | 354, 469, 1545 |
| SapI | GCTCTTC | 1 cut(s) | 666 |
| SaqAI | TTAA | 7 cut(s) | 150, 383, 807, 1001, 1215, 1223, 1833 |
| SatI | GCNGC | 9 cut(s) | 126, 197, 419, 443, 576, 872, 1161, 1419, 2220 |
| Sau3AI | GATC | 8 cut(s) | 314, 454, 610, 886, 983, 1279, 1777, 2107 |
| Sau96I | GGNCC | 7 cut(s) | 46, 433, 961, 1051, 1057, 1058, 1257 |
| ScaI | AGTACT | 2 cut(s) | 793, 1447 |
| SchI | GAGTC | 3 cut(s) | 591, 1905, 2050 |
| ScrFI | CCNGG | 4 cut(s) | 502, 1055, 1056, 1507 |
| SduI | GDGCHC | 3 cut(s) | 838, 1061, 1609 |
| SfaNI | GCATC | 3 cut(s) | 430, 1405, 1600 |
| SfcI | CTRYAG | 1 cut(s) | 872 |
| SfoI | GGCGCC | 1 cut(s) | 14 |
| SfuI | TTCGAA | 2 cut(s) | 238, 664 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1700 |
| SinI | GGWCC | 3 cut(s) | 433, 961, 1257 |
| SmaI | CCCGGG | 1 cut(s) | 1056 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 354, 469, 1545 |
| SmlI | CTYRAG | 1 cut(s) | 768 |
| SmoI | CTYRAG | 1 cut(s) | 768 |
| Sse9I | AATT | 8 cut(s) | 101, 136, 151, 262, 446, 783, 1200, 2033 |
| SsiI | CCGC | 3 cut(s) | 87, 418, 575 |
| SspDI | GGCGCC | 1 cut(s) | 12 |
| SspI | AATATT | 4 cut(s) | 748, 971, 1136, 1219 |
| SspMI | CTAG | 5 cut(s) | 302, 638, 1395, 1563, 1802 |
| StyD4I | CCNGG | 4 cut(s) | 500, 1053, 1054, 1505 |
| StyI | CCWWGG | 3 cut(s) | 987, 1283, 2177 |
| TaaI | ACNGT | 7 cut(s) | 412, 949, 1092, 1314, 1431, 1763, 1862 |
| TaiI | ACGT | 3 cut(s) | 150, 342, 1759 |
| TaqI | TCGA | 6 cut(s) | 238, 285, 323, 531, 664, 2004 |
| TasI | AATT | 8 cut(s) | 101, 136, 151, 262, 446, 783, 1200, 2033 |
| TatI | WGTACW | 4 cut(s) | 634, 791, 1445, 1857 |
| TauI | GCSGC | 2 cut(s) | 421, 578 |
| Tru1I | TTAA | 7 cut(s) | 150, 383, 807, 1001, 1215, 1223, 1833 |
| Tru9I | TTAA | 7 cut(s) | 150, 383, 807, 1001, 1215, 1223, 1833 |
| TscAI | CASTG | 3 cut(s) | 255, 471, 1617 |
| TseFI | GTSAC | 4 cut(s) | 583, 1117, 1757, 2124 |
| TseI | GCWGC | 7 cut(s) | 125, 196, 442, 871, 1160, 1418, 2219 |
| Tsp45I | GTSAC | 4 cut(s) | 583, 1117, 1757, 2124 |
| TspDTI | ATGAA | 8 cut(s) | 59, 338, 593, 899, 981, 1622, 1799, 1977 |
| TspGWI | ACGGA | 1 cut(s) | 165 |
| TspMI | CCCGGG | 1 cut(s) | 1054 |
| TspRI | CASTG | 3 cut(s) | 255, 471, 1617 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1330, 2022 |
| VneI | GTGCAC | 2 cut(s) | 834, 1605 |
| VpaK11BI | GGWCC | 3 cut(s) | 433, 961, 1257 |
| VspI | ATTAAT | 1 cut(s) | 1833 |
| XapI | RAATTY | 3 cut(s) | 136, 783, 1200 |
| XbaI | TCTAGA | 1 cut(s) | 301 |
| XceI | RCATGY | 4 cut(s) | 1072, 1304, 1650, 2031 |
| XmaI | CCCGGG | 1 cut(s) | 1054 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1204, 1790 |
| XspI | CTAG | 5 cut(s) | 302, 638, 1395, 1563, 1802 |
| ZrmI | AGTACT | 2 cut(s) | 793, 1447 |