Ribosomal RNA small subunit methyltransferase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyoxalase | PF00903 | 23 - 144 | 2.8e-20 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| Glyoxalase_4 | PF13669 | 27 - 128 | 2.1e-07 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| Glyoxalase | PF00903 | 156 - 275 | 7.1e-08 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 326, 812 |
| Acc36I | ACCTGC | 2 cut(s) | 326, 812 |
| AccBSI | CCGCTC | 2 cut(s) | 332, 714 |
| AccI | GTMKAC | 3 cut(s) | 572, 656, 705 |
| AccII | CGCG | 1 cut(s) | 72 |
| AciI | CCGC | 3 cut(s) | 248, 332, 714 |
| AclWI | GGATC | 1 cut(s) | 401 |
| AcsI | RAATTY | 2 cut(s) | 122, 506 |
| AcvI | CACGTG | 1 cut(s) | 353 |
| AfaI | GTAC | 1 cut(s) | 551 |
| AflIII | ACRYGT | 1 cut(s) | 350 |
| AgsI | TTSAA | 7 cut(s) | 277, 320, 501, 506, 631, 728, 830 |
| AjnI | CCWGG | 1 cut(s) | 358 |
| AluBI | AGCT | 3 cut(s) | 8, 430, 722 |
| AluI | AGCT | 3 cut(s) | 8, 430, 722 |
| Alw21I | GWGCWC | 1 cut(s) | 432 |
| Alw26I | GTCTC | 1 cut(s) | 200 |
| AlwI | GGATC | 1 cut(s) | 401 |
| AoxI | GGCC | 2 cut(s) | 362, 440 |
| ApeKI | GCWGC | 3 cut(s) | 5, 245, 719 |
| ApoI | RAATTY | 2 cut(s) | 122, 506 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 759 |
| AspLEI | GCGC | 1 cut(s) | 74 |
| AspS9I | GGNCC | 4 cut(s) | 197, 362, 384, 441 |
| AsuC2I | CCSGG | 1 cut(s) | 770 |
| AsuHPI | GGTGA | 2 cut(s) | 101, 793 |
| AvaII | GGWCC | 2 cut(s) | 197, 384 |
| AxyI | CCTNAGG | 1 cut(s) | 437 |
| BanII | GRGCYC | 2 cut(s) | 228, 432 |
| BbrPI | CACGTG | 1 cut(s) | 353 |
| Bbv12I | GWGCWC | 1 cut(s) | 432 |
| BbvI | GCAGC | 3 cut(s) | 17, 257, 731 |
| BccI | CCATC | 1 cut(s) | 577 |
| BceAI | ACGGC | 1 cut(s) | 430 |
| BciT130I | CCWGG | 1 cut(s) | 360 |
| BclI | TGATCA | 1 cut(s) | 345 |
| BcnI | CCSGG | 1 cut(s) | 770 |
| BcoDI | GTCTC | 1 cut(s) | 200 |
| BfaI | CTAG | 1 cut(s) | 221 |
| BfmI | CTRYAG | 3 cut(s) | 180, 418, 576 |
| BfuAI | ACCTGC | 2 cut(s) | 326, 812 |
| BisI | GCNGC | 4 cut(s) | 6, 246, 333, 720 |
| BlsI | GCNGC | 4 cut(s) | 7, 247, 334, 721 |
| Bme1390I | CCNGG | 2 cut(s) | 360, 770 |
| Bme18I | GGWCC | 2 cut(s) | 197, 384 |
| BmgT120I | GGNCC | 4 cut(s) | 197, 362, 384, 441 |
| BmiI | GGNNCC | 3 cut(s) | 199, 443, 598 |
| BmrFI | CCNGG | 2 cut(s) | 360, 770 |
| BmsI | GCATC | 1 cut(s) | 232 |
| BpmI | CTGGAG | 1 cut(s) | 435 |
| BpuMI | CCSGG | 1 cut(s) | 770 |
| BsaAI | YACGTR | 1 cut(s) | 353 |
| BsaBI | GATNNNNATC | 2 cut(s) | 96, 492 |
| BsaJI | CCNNGG | 1 cut(s) | 359 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 708, 738 |
| Bse1I | ACTGG | 2 cut(s) | 568, 735 |
| Bse21I | CCTNAGG | 1 cut(s) | 437 |
| Bse3DI | GCAATG | 1 cut(s) | 684 |
| Bse8I | GATNNNNATC | 2 cut(s) | 96, 492 |
| BseBI | CCWGG | 1 cut(s) | 360 |
| BseDI | CCNNGG | 1 cut(s) | 359 |
| BseGI | GGATG | 2 cut(s) | 138, 889 |
| BseJI | GATNNNNATC | 2 cut(s) | 96, 492 |
| BseMI | GCAATG | 1 cut(s) | 684 |
| BseMII | CTCAG | 3 cut(s) | 451, 575, 623 |
| BseNI | ACTGG | 2 cut(s) | 568, 735 |
| BseRI | GAGGAG | 2 cut(s) | 422, 425 |
| BseXI | GCAGC | 3 cut(s) | 17, 257, 731 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| BshFI | GGCC | 2 cut(s) | 364, 442 |
| BsiHKAI | GWGCWC | 1 cut(s) | 432 |
| BsiSI | CCGG | 1 cut(s) | 770 |
| BsmAI | GTCTC | 1 cut(s) | 200 |
| BsnI | GGCC | 2 cut(s) | 364, 442 |
| Bsp1286I | GDGCHC | 2 cut(s) | 228, 432 |
| Bsp143I | GATC | 5 cut(s) | 91, 97, 345, 406, 493 |
| BspACI | CCGC | 3 cut(s) | 248, 332, 714 |
| BspANI | GGCC | 2 cut(s) | 364, 442 |
| BspCNI | CTCAG | 3 cut(s) | 450, 574, 622 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspLI | GGNNCC | 3 cut(s) | 199, 443, 598 |
| BspMAI | CTGCAG | 1 cut(s) | 184 |
| BspMI | ACCTGC | 2 cut(s) | 326, 812 |
| BspPI | GGATC | 1 cut(s) | 401 |
| BsrBI | CCGCTC | 2 cut(s) | 332, 714 |
| BsrDI | GCAATG | 1 cut(s) | 684 |
| BsrI | ACTGG | 2 cut(s) | 568, 735 |
| BssECI | CCNNGG | 1 cut(s) | 359 |
| BssMI | GATC | 5 cut(s) | 91, 97, 345, 406, 493 |
| BssNAI | GTATAC | 3 cut(s) | 573, 657, 706 |
| Bst1107I | GTATAC | 3 cut(s) | 573, 657, 706 |
| Bst2UI | CCWGG | 1 cut(s) | 360 |
| Bst4CI | ACNGT | 3 cut(s) | 316, 422, 462 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 188, 683 |
| BstBAI | YACGTR | 1 cut(s) | 353 |
| BstC8I | GCNNGC | 2 cut(s) | 149, 684 |
| BstDEI | CTNAG | 3 cut(s) | 437, 561, 609 |
| BstF5I | GGATG | 2 cut(s) | 138, 889 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstHHI | GCGC | 1 cut(s) | 74 |
| BstKTI | GATC | 5 cut(s) | 94, 100, 348, 409, 496 |
| BstMAI | GTCTC | 1 cut(s) | 200 |
| BstMBI | GATC | 5 cut(s) | 91, 97, 345, 406, 493 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 683 |
| BstNI | CCWGG | 1 cut(s) | 360 |
| BstSCI | CCNGG | 2 cut(s) | 358, 768 |
| BstSFI | CTRYAG | 3 cut(s) | 180, 418, 576 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 3 cut(s) | 17, 257, 731 |
| BstZ17I | GTATAC | 3 cut(s) | 573, 657, 706 |
| Bsu36I | CCTNAGG | 1 cut(s) | 437 |
| BsuRI | GGCC | 2 cut(s) | 364, 442 |
| BtgZI | GCGATG | 1 cut(s) | 596 |
| BtsCI | GGATG | 2 cut(s) | 138, 889 |
| BtsIMutI | CAGTG | 2 cut(s) | 458, 693 |
| BveI | ACCTGC | 2 cut(s) | 326, 812 |
| Cac8I | GCNNGC | 2 cut(s) | 149, 684 |
| CfoI | GCGC | 1 cut(s) | 74 |
| Cfr13I | GGNCC | 4 cut(s) | 197, 362, 384, 441 |
| CseI | GACGC | 1 cut(s) | 563 |
| Csp6I | GTAC | 1 cut(s) | 550 |
| CviAII | CATG | 2 cut(s) | 23, 821 |
| CviQI | GTAC | 1 cut(s) | 550 |
| DdeI | CTNAG | 3 cut(s) | 437, 561, 609 |
| DpnI | GATC | 5 cut(s) | 93, 99, 347, 408, 495 |
| DpnII | GATC | 5 cut(s) | 91, 97, 345, 406, 493 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Ecl136II | GAGCTC | 1 cut(s) | 430 |
| Eco24I | GRGCYC | 2 cut(s) | 228, 432 |
| Eco47I | GGWCC | 2 cut(s) | 197, 384 |
| Eco53kI | GAGCTC | 1 cut(s) | 430 |
| Eco72I | CACGTG | 1 cut(s) | 353 |
| Eco81I | CCTNAGG | 1 cut(s) | 437 |
| EcoICRI | GAGCTC | 1 cut(s) | 430 |
| EcoO109I | RGGNCCY | 1 cut(s) | 441 |
| EcoRI | GAATTC | 1 cut(s) | 506 |
| EcoRII | CCWGG | 1 cut(s) | 358 |
| EcoT38I | GRGCYC | 2 cut(s) | 228, 432 |
| FaeI | CATG | 2 cut(s) | 26, 824 |
| FatI | CATG | 2 cut(s) | 22, 820 |
| FbaI | TGATCA | 1 cut(s) | 345 |
| FblI | GTMKAC | 3 cut(s) | 572, 656, 705 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 246, 333, 720 |
| FokI | GGATG | 1 cut(s) | 145 |
| FriOI | GRGCYC | 2 cut(s) | 228, 432 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 246, 333, 720 |
| FspBI | CTAG | 1 cut(s) | 221 |
| GlaI | GCGC | 1 cut(s) | 73 |
| GluI | GCNGC | 4 cut(s) | 6, 246, 333, 720 |
| GsuI | CTGGAG | 1 cut(s) | 435 |
| HaeIII | GGCC | 2 cut(s) | 364, 442 |
| HapII | CCGG | 1 cut(s) | 770 |
| HgaI | GACGC | 1 cut(s) | 563 |
| HhaI | GCGC | 1 cut(s) | 74 |
| Hin1II | CATG | 2 cut(s) | 26, 824 |
| Hin6I | GCGC | 1 cut(s) | 72 |
| HinP1I | GCGC | 1 cut(s) | 72 |
| HincII | GTYRAC | 1 cut(s) | 736 |
| HindII | GTYRAC | 1 cut(s) | 736 |
| HinfI | GANTC | 4 cut(s) | 208, 288, 815, 830 |
| HpaI | GTTAAC | 1 cut(s) | 736 |
| HpaII | CCGG | 1 cut(s) | 770 |
| HphI | GGTGA | 2 cut(s) | 101, 793 |
| Hpy166II | GTNNAC | 8 cut(s) | 356, 403, 573, 657, 706, 736, 778, 844 |
| Hpy188I | TCNGA | 5 cut(s) | 83, 266, 329, 601, 612 |
| Hpy188III | TCNNGA | 5 cut(s) | 95, 400, 410, 452, 851 |
| Hpy8I | GTNNAC | 8 cut(s) | 356, 403, 573, 657, 706, 736, 778, 844 |
| Hpy99I | CGWCG | 4 cut(s) | 63, 416, 557, 619 |
| HpyAV | CCTTC | 2 cut(s) | 283, 406 |
| HpyCH4III | ACNGT | 3 cut(s) | 316, 422, 462 |
| HpyCH4IV | ACGT | 2 cut(s) | 352, 702 |
| HpyCH4V | TGCA | 5 cut(s) | 46, 182, 245, 371, 677 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 683 |
| HpyF3I | CTNAG | 3 cut(s) | 437, 561, 609 |
| HpySE526I | ACGT | 2 cut(s) | 352, 702 |
| Hsp92II | CATG | 2 cut(s) | 26, 824 |
| HspAI | GCGC | 1 cut(s) | 72 |
| Ksp22I | TGATCA | 1 cut(s) | 345 |
| KspAI | GTTAAC | 1 cut(s) | 736 |
| Kzo9I | GATC | 5 cut(s) | 91, 97, 345, 406, 493 |
| LmnI | GCTCC | 3 cut(s) | 13, 435, 716 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 257, 731 |
| LweI | GCATC | 1 cut(s) | 232 |
| MaeI | CTAG | 1 cut(s) | 221 |
| MaeII | ACGT | 2 cut(s) | 352, 702 |
| MaeIII | GTNAC | 2 cut(s) | 481, 646 |
| MalI | GATC | 5 cut(s) | 93, 99, 347, 408, 495 |
| MbiI | CCGCTC | 2 cut(s) | 332, 714 |
| MboI | GATC | 5 cut(s) | 91, 97, 345, 406, 493 |
| MboII | GAAGA | 1 cut(s) | 215 |
| MfeI | CAATTG | 2 cut(s) | 366, 501 |
| MhlI | GDGCHC | 2 cut(s) | 228, 432 |
| MluCI | AATT | 5 cut(s) | 122, 366, 501, 506, 759 |
| MlyI | GAGTC | 2 cut(s) | 202, 282 |
| MmeI | TCCRAC | 1 cut(s) | 15 |
| MnlI | CCTC | 5 cut(s) | 367, 375, 443, 446, 743 |
| MroXI | GAANNNNTTC | 1 cut(s) | 759 |
| MseI | TTAA | 3 cut(s) | 108, 477, 735 |
| MslI | CAYNNNNRTG | 2 cut(s) | 27, 240 |
| MspA1I | CMGCKG | 2 cut(s) | 248, 722 |
| MspI | CCGG | 1 cut(s) | 770 |
| MspR9I | CCNGG | 2 cut(s) | 360, 770 |
| MunI | CAATTG | 2 cut(s) | 366, 501 |
| MvaI | CCWGG | 1 cut(s) | 360 |
| MvnI | CGCG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 683 |
| NciI | CCSGG | 1 cut(s) | 770 |
| NdeII | GATC | 5 cut(s) | 91, 97, 345, 406, 493 |
| NlaIII | CATG | 2 cut(s) | 26, 824 |
| NlaIV | GGNNCC | 3 cut(s) | 199, 443, 598 |
| NmuCI | GTSAC | 2 cut(s) | 481, 646 |
| PaqCI | CACCTGC | 2 cut(s) | 326, 812 |
| PdmI | GAANNNNTTC | 1 cut(s) | 759 |
| PfeI | GAWTC | 2 cut(s) | 815, 830 |
| PkrI | GCNGC | 4 cut(s) | 7, 247, 334, 721 |
| PleI | GAGTC | 2 cut(s) | 202, 282 |
| PmaCI | CACGTG | 1 cut(s) | 353 |
| PmlI | CACGTG | 1 cut(s) | 353 |
| PpsI | GAGTC | 2 cut(s) | 202, 282 |
| Ppu21I | YACGTR | 1 cut(s) | 353 |
| Psp124BI | GAGCTC | 1 cut(s) | 432 |
| Psp6I | CCWGG | 1 cut(s) | 358 |
| PspCI | CACGTG | 1 cut(s) | 353 |
| PspGI | CCWGG | 1 cut(s) | 358 |
| PspN4I | GGNNCC | 3 cut(s) | 199, 443, 598 |
| PspPI | GGNCC | 4 cut(s) | 197, 362, 384, 441 |
| PstI | CTGCAG | 1 cut(s) | 184 |
| PvuII | CAGCTG | 1 cut(s) | 722 |
| RsaI | GTAC | 1 cut(s) | 551 |
| RsaNI | GTAC | 1 cut(s) | 550 |
| RseI | CAYNNNNRTG | 2 cut(s) | 27, 240 |
| SacI | GAGCTC | 1 cut(s) | 432 |
| SaqAI | TTAA | 3 cut(s) | 108, 477, 735 |
| SatI | GCNGC | 4 cut(s) | 6, 246, 333, 720 |
| Sau3AI | GATC | 5 cut(s) | 91, 97, 345, 406, 493 |
| Sau96I | GGNCC | 4 cut(s) | 197, 362, 384, 441 |
| SchI | GAGTC | 2 cut(s) | 202, 282 |
| ScrFI | CCNGG | 2 cut(s) | 360, 770 |
| SduI | GDGCHC | 2 cut(s) | 228, 432 |
| SetI | ASST | 8 cut(s) | 10, 340, 355, 432, 537, 705, 724, 806 |
| SfaNI | GCATC | 1 cut(s) | 232 |
| SfcI | CTRYAG | 3 cut(s) | 180, 418, 576 |
| SinI | GGWCC | 2 cut(s) | 197, 384 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 27, 240 |
| Sse9I | AATT | 5 cut(s) | 122, 366, 501, 506, 759 |
| SsiI | CCGC | 3 cut(s) | 248, 332, 714 |
| SspMI | CTAG | 1 cut(s) | 221 |
| SstI | GAGCTC | 1 cut(s) | 432 |
| StyD4I | CCNGG | 2 cut(s) | 358, 768 |
| TaaI | ACNGT | 3 cut(s) | 316, 422, 462 |
| TaiI | ACGT | 2 cut(s) | 355, 705 |
| TaqI | TCGA | 3 cut(s) | 100, 624, 763 |
| TasI | AATT | 5 cut(s) | 122, 366, 501, 506, 759 |
| TauI | GCSGC | 1 cut(s) | 335 |
| TfiI | GAWTC | 2 cut(s) | 815, 830 |
| Tru1I | TTAA | 3 cut(s) | 108, 477, 735 |
| Tru9I | TTAA | 3 cut(s) | 108, 477, 735 |
| TscAI | CASTG | 2 cut(s) | 465, 700 |
| TseFI | GTSAC | 2 cut(s) | 481, 646 |
| TseI | GCWGC | 3 cut(s) | 5, 245, 719 |
| Tsp45I | GTSAC | 2 cut(s) | 481, 646 |
| TspDTI | ATGAA | 2 cut(s) | 149, 545 |
| TspRI | CASTG | 2 cut(s) | 465, 700 |
| VpaK11BI | GGWCC | 2 cut(s) | 197, 384 |
| XapI | RAATTY | 2 cut(s) | 122, 506 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 305 |
| XmiI | GTMKAC | 3 cut(s) | 572, 656, 705 |
| XmnI | GAANNNNTTC | 1 cut(s) | 759 |
| XspI | CTAG | 1 cut(s) | 221 |