Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1013 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 324 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 869 |
| AccI | GTMKAC | 2 cut(s) | 340, 740 |
| AciI | CCGC | 3 cut(s) | 772, 785, 935 |
| AclI | AACGTT | 1 cut(s) | 600 |
| AclWI | GGATC | 5 cut(s) | 281, 447, 455, 1137, 1267 |
| AcsI | RAATTY | 3 cut(s) | 788, 835, 1166 |
| AfaI | GTAC | 4 cut(s) | 241, 476, 727, 910 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 869, 1277 |
| AgsI | TTSAA | 3 cut(s) | 119, 215, 880 |
| AhlI | ACTAGT | 1 cut(s) | 865 |
| AjnI | CCWGG | 1 cut(s) | 586 |
| AluBI | AGCT | 9 cut(s) | 26, 157, 194, 218, 226, 1009, 1034, 1232, 1244 |
| AluI | AGCT | 9 cut(s) | 26, 157, 194, 218, 226, 1009, 1034, 1232, 1244 |
| Alw26I | GTCTC | 4 cut(s) | 835, 962, 1097, 1272 |
| AlwI | GGATC | 5 cut(s) | 281, 447, 455, 1137, 1267 |
| AoxI | GGCC | 1 cut(s) | 143 |
| ApeKI | GCWGC | 2 cut(s) | 578, 641 |
| ApoI | RAATTY | 3 cut(s) | 788, 835, 1166 |
| AspLEI | GCGC | 1 cut(s) | 1003 |
| AspS9I | GGNCC | 1 cut(s) | 1285 |
| AsuHPI | GGTGA | 2 cut(s) | 686, 1157 |
| AsuII | TTCGAA | 1 cut(s) | 381 |
| AsuNHI | GCTAGC | 1 cut(s) | 295 |
| AvaII | GGWCC | 1 cut(s) | 1285 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 715, 747 |
| BbvI | GCAGC | 2 cut(s) | 565, 628 |
| BccI | CCATC | 7 cut(s) | 240, 535, 671, 867, 887, 1271, 1291 |
| BciT130I | CCWGG | 1 cut(s) | 588 |
| BclI | TGATCA | 1 cut(s) | 946 |
| BcoDI | GTCTC | 4 cut(s) | 835, 962, 1097, 1272 |
| BcuI | ACTAGT | 1 cut(s) | 865 |
| BfaI | CTAG | 3 cut(s) | 219, 296, 866 |
| BfmI | CTRYAG | 2 cut(s) | 579, 1227 |
| BfoI | RGCGCY | 1 cut(s) | 1004 |
| BisI | GCNGC | 3 cut(s) | 579, 642, 772 |
| BlsI | GCNGC | 3 cut(s) | 580, 643, 773 |
| BmcAI | AGTACT | 1 cut(s) | 727 |
| Bme1390I | CCNGG | 1 cut(s) | 588 |
| Bme18I | GGWCC | 1 cut(s) | 1285 |
| BmgT120I | GGNCC | 1 cut(s) | 1285 |
| BmrFI | CCNGG | 1 cut(s) | 588 |
| BmsI | GCATC | 3 cut(s) | 61, 653, 671 |
| BmtI | GCTAGC | 1 cut(s) | 299 |
| Bpu14I | TTCGAA | 1 cut(s) | 381 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1065 |
| BsaI | GGTCTC | 2 cut(s) | 962, 1272 |
| BsaJI | CCNNGG | 1 cut(s) | 290 |
| BsaWI | WCCGGW | 2 cut(s) | 1270, 1293 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 869, 1277 |
| Bse1I | ACTGG | 1 cut(s) | 755 |
| Bse3DI | GCAATG | 1 cut(s) | 1026 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1065 |
| BseBI | CCWGG | 1 cut(s) | 588 |
| BseDI | CCNNGG | 1 cut(s) | 290 |
| BseGI | GGATG | 9 cut(s) | 270, 397, 686, 822, 856, 878, 898, 1190, 1302 |
| BseJI | GATNNNNATC | 1 cut(s) | 1065 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 869, 1277 |
| BseMI | GCAATG | 1 cut(s) | 1026 |
| BseMII | CTCAG | 1 cut(s) | 1108 |
| BseNI | ACTGG | 1 cut(s) | 755 |
| BseXI | GCAGC | 2 cut(s) | 565, 628 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1275 |
| BshFI | GGCC | 1 cut(s) | 145 |
| BsiEI | CGRYCG | 1 cut(s) | 1275 |
| BsiSI | CCGG | 2 cut(s) | 1271, 1294 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 869, 1277 |
| BsmAI | GTCTC | 4 cut(s) | 835, 962, 1097, 1272 |
| BsnI | GGCC | 1 cut(s) | 145 |
| Bso31I | GGTCTC | 2 cut(s) | 962, 1272 |
| Bsp119I | TTCGAA | 1 cut(s) | 381 |
| Bsp143I | GATC | 7 cut(s) | 286, 439, 460, 946, 1060, 1129, 1259 |
| Bsp19I | CCATGG | 1 cut(s) | 290 |
| BspACI | CCGC | 3 cut(s) | 772, 785, 935 |
| BspANI | GGCC | 1 cut(s) | 145 |
| BspCNI | CTCAG | 1 cut(s) | 1107 |
| BspMAI | CTGCAG | 1 cut(s) | 583 |
| BspOI | GCTAGC | 1 cut(s) | 299 |
| BspPI | GGATC | 5 cut(s) | 281, 447, 455, 1137, 1267 |
| BspQI | GCTCTTC | 1 cut(s) | 12 |
| BspT104I | TTCGAA | 1 cut(s) | 381 |
| BspTNI | GGTCTC | 2 cut(s) | 962, 1272 |
| BsrDI | GCAATG | 1 cut(s) | 1026 |
| BsrI | ACTGG | 1 cut(s) | 755 |
| BssECI | CCNNGG | 1 cut(s) | 290 |
| BssMI | GATC | 7 cut(s) | 286, 439, 460, 946, 1060, 1129, 1259 |
| BssT1I | CCWWGG | 1 cut(s) | 290 |
| Bst2UI | CCWGG | 1 cut(s) | 588 |
| Bst4CI | ACNGT | 2 cut(s) | 745, 801 |
| Bst6I | CTCTTC | 1 cut(s) | 12 |
| BstBI | TTCGAA | 1 cut(s) | 381 |
| BstC8I | GCNNGC | 4 cut(s) | 297, 576, 769, 1027 |
| BstDEI | CTNAG | 2 cut(s) | 173, 1094 |
| BstDSI | CCRYGG | 1 cut(s) | 290 |
| BstF5I | GGATG | 9 cut(s) | 270, 397, 686, 822, 856, 878, 898, 1190, 1302 |
| BstH2I | RGCGCY | 1 cut(s) | 1004 |
| BstHHI | GCGC | 1 cut(s) | 1003 |
| BstKTI | GATC | 7 cut(s) | 289, 442, 463, 949, 1063, 1132, 1262 |
| BstMAI | GTCTC | 4 cut(s) | 835, 962, 1097, 1272 |
| BstMBI | GATC | 7 cut(s) | 286, 439, 460, 946, 1060, 1129, 1259 |
| BstMCI | CGRYCG | 1 cut(s) | 1275 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 11, 791, 1031, 1250 |
| BstNI | CCWGG | 1 cut(s) | 588 |
| BstNSI | RCATGY | 1 cut(s) | 771 |
| BstSCI | CCNGG | 1 cut(s) | 586 |
| BstSFI | CTRYAG | 2 cut(s) | 579, 1227 |
| BstV1I | GCAGC | 2 cut(s) | 565, 628 |
| BstX2I | RGATCY | 1 cut(s) | 1259 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1120 |
| BstYI | RGATCY | 1 cut(s) | 1259 |
| BsuRI | GGCC | 1 cut(s) | 145 |
| BtgI | CCRYGG | 1 cut(s) | 290 |
| BtsCI | GGATG | 9 cut(s) | 270, 397, 686, 822, 856, 878, 898, 1190, 1302 |
| BtsI | GCAGTG | 1 cut(s) | 588 |
| BtsIMutI | CAGTG | 2 cut(s) | 361, 588 |
| Cac8I | GCNNGC | 4 cut(s) | 297, 576, 769, 1027 |
| CfoI | GCGC | 1 cut(s) | 1003 |
| Cfr13I | GGNCC | 1 cut(s) | 1285 |
| Csp6I | GTAC | 4 cut(s) | 240, 475, 726, 909 |
| CviAII | CATG | 9 cut(s) | 275, 279, 291, 518, 605, 719, 768, 1058, 1205 |
| CviQI | GTAC | 4 cut(s) | 240, 475, 726, 909 |
| DdeI | CTNAG | 2 cut(s) | 173, 1094 |
| DpnI | GATC | 7 cut(s) | 288, 441, 462, 948, 1062, 1131, 1261 |
| DpnII | GATC | 7 cut(s) | 286, 439, 460, 946, 1060, 1129, 1259 |
| DraI | TTTAAA | 1 cut(s) | 186 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 324 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 324 |
| Eam1104I | CTCTTC | 1 cut(s) | 12 |
| EarI | CTCTTC | 1 cut(s) | 12 |
| EciI | GGCGGA | 1 cut(s) | 800 |
| Eco130I | CCWWGG | 1 cut(s) | 290 |
| Eco31I | GGTCTC | 2 cut(s) | 962, 1272 |
| Eco32I | GATATC | 1 cut(s) | 807 |
| Eco47I | GGWCC | 1 cut(s) | 1285 |
| EcoRI | GAATTC | 2 cut(s) | 788, 835 |
| EcoRII | CCWGG | 1 cut(s) | 586 |
| EcoRV | GATATC | 1 cut(s) | 807 |
| EcoT14I | CCWWGG | 1 cut(s) | 290 |
| EcoT22I | ATGCAT | 1 cut(s) | 280 |
| ErhI | CCWWGG | 1 cut(s) | 290 |
| FaeI | CATG | 9 cut(s) | 278, 282, 294, 521, 608, 722, 771, 1061, 1208 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 650, 682 |
| FatI | CATG | 9 cut(s) | 274, 278, 290, 517, 604, 718, 767, 1057, 1204 |
| FbaI | TGATCA | 1 cut(s) | 946 |
| FblI | GTMKAC | 2 cut(s) | 340, 740 |
| Fnu4HI | GCNGC | 3 cut(s) | 579, 642, 772 |
| FokI | GGATG | 9 cut(s) | 277, 404, 693, 829, 863, 885, 905, 1177, 1309 |
| Fsp4HI | GCNGC | 3 cut(s) | 579, 642, 772 |
| FspBI | CTAG | 3 cut(s) | 219, 296, 866 |
| GlaI | GCGC | 1 cut(s) | 1002 |
| GluI | GCNGC | 3 cut(s) | 579, 642, 772 |
| HaeII | RGCGCY | 1 cut(s) | 1004 |
| HaeIII | GGCC | 1 cut(s) | 145 |
| HapII | CCGG | 2 cut(s) | 1271, 1294 |
| HhaI | GCGC | 1 cut(s) | 1003 |
| Hin1II | CATG | 9 cut(s) | 278, 282, 294, 521, 608, 722, 771, 1061, 1208 |
| Hin6I | GCGC | 1 cut(s) | 1001 |
| HinP1I | GCGC | 1 cut(s) | 1001 |
| HincII | GTYRAC | 1 cut(s) | 741 |
| HindII | GTYRAC | 1 cut(s) | 741 |
| HindIII | AAGCTT | 2 cut(s) | 155, 192 |
| HinfI | GANTC | 7 cut(s) | 207, 521, 544, 551, 663, 886, 1082 |
| HpaII | CCGG | 2 cut(s) | 1271, 1294 |
| HphI | GGTGA | 2 cut(s) | 686, 1157 |
| Hpy166II | GTNNAC | 3 cut(s) | 341, 741, 748 |
| Hpy188I | TCNGA | 3 cut(s) | 330, 700, 1087 |
| Hpy188III | TCNNGA | 5 cut(s) | 119, 371, 548, 840, 890 |
| Hpy8I | GTNNAC | 3 cut(s) | 341, 741, 748 |
| Hpy99I | CGWCG | 1 cut(s) | 745 |
| HpyAV | CCTTC | 4 cut(s) | 741, 820, 1193, 1197 |
| HpyCH4III | ACNGT | 2 cut(s) | 745, 801 |
| HpyCH4IV | ACGT | 1 cut(s) | 600 |
| HpyCH4V | TGCA | 6 cut(s) | 278, 434, 517, 581, 644, 767 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 11, 791, 1031, 1250 |
| HpyF3I | CTNAG | 2 cut(s) | 173, 1094 |
| HpySE526I | ACGT | 1 cut(s) | 600 |
| Hsp92II | CATG | 9 cut(s) | 278, 282, 294, 521, 608, 722, 771, 1061, 1208 |
| HspAI | GCGC | 1 cut(s) | 1001 |
| Ksp22I | TGATCA | 1 cut(s) | 946 |
| Kzo9I | GATC | 7 cut(s) | 286, 439, 460, 946, 1060, 1129, 1259 |
| LguI | GCTCTTC | 1 cut(s) | 12 |
| LmnI | GCTCC | 1 cut(s) | 373 |
| Lsp1109I | GCAGC | 2 cut(s) | 565, 628 |
| LweI | GCATC | 3 cut(s) | 61, 653, 671 |
| MaeI | CTAG | 3 cut(s) | 219, 296, 866 |
| MaeII | ACGT | 1 cut(s) | 600 |
| MaeIII | GTNAC | 1 cut(s) | 507 |
| MalI | GATC | 7 cut(s) | 288, 441, 462, 948, 1062, 1131, 1261 |
| MboI | GATC | 7 cut(s) | 286, 439, 460, 946, 1060, 1129, 1259 |
| MboII | GAAGA | 2 cut(s) | 574, 577 |
| MfeI | CAATTG | 2 cut(s) | 497, 711 |
| MflI | RGATCY | 1 cut(s) | 1259 |
| MlyI | GAGTC | 1 cut(s) | 1091 |
| MmeI | TCCRAC | 3 cut(s) | 179, 850, 1107 |
| MnlI | CCTC | 8 cut(s) | 94, 170, 382, 645, 694, 870, 1150, 1204 |
| Mph1103I | ATGCAT | 1 cut(s) | 280 |
| MseI | TTAA | 6 cut(s) | 35, 185, 401, 597, 1065, 1164 |
| MspI | CCGG | 2 cut(s) | 1271, 1294 |
| MspR9I | CCNGG | 1 cut(s) | 588 |
| MunI | CAATTG | 2 cut(s) | 497, 711 |
| MvaI | CCWGG | 1 cut(s) | 588 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 11, 791, 1031, 1250 |
| NcoI | CCATGG | 1 cut(s) | 290 |
| NdeII | GATC | 7 cut(s) | 286, 439, 460, 946, 1060, 1129, 1259 |
| NheI | GCTAGC | 1 cut(s) | 295 |
| NlaIII | CATG | 9 cut(s) | 278, 282, 294, 521, 608, 722, 771, 1061, 1208 |
| NmuCI | GTSAC | 1 cut(s) | 507 |
| NsiI | ATGCAT | 1 cut(s) | 280 |
| NspI | RCATGY | 1 cut(s) | 771 |
| NspV | TTCGAA | 1 cut(s) | 381 |
| PaeI | GCATGC | 1 cut(s) | 771 |
| PciSI | GCTCTTC | 1 cut(s) | 12 |
| PfeI | GAWTC | 6 cut(s) | 207, 521, 544, 551, 663, 886 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 869 |
| PkrI | GCNGC | 3 cut(s) | 580, 643, 773 |
| PleI | GAGTC | 1 cut(s) | 1090 |
| PpsI | GAGTC | 1 cut(s) | 1090 |
| PsiI | TTATAA | 1 cut(s) | 1013 |
| Psp1406I | AACGTT | 1 cut(s) | 600 |
| Psp6I | CCWGG | 1 cut(s) | 586 |
| PspGI | CCWGG | 1 cut(s) | 586 |
| PspPI | GGNCC | 1 cut(s) | 1285 |
| PstI | CTGCAG | 1 cut(s) | 583 |
| PsuI | RGATCY | 1 cut(s) | 1259 |
| RsaI | GTAC | 4 cut(s) | 241, 476, 727, 910 |
| RsaNI | GTAC | 4 cut(s) | 240, 475, 726, 909 |
| SalI | GTCGAC | 1 cut(s) | 739 |
| SapI | GCTCTTC | 1 cut(s) | 12 |
| SaqAI | TTAA | 6 cut(s) | 35, 185, 401, 597, 1065, 1164 |
| SatI | GCNGC | 3 cut(s) | 579, 642, 772 |
| Sau3AI | GATC | 7 cut(s) | 286, 439, 460, 946, 1060, 1129, 1259 |
| Sau96I | GGNCC | 1 cut(s) | 1285 |
| ScaI | AGTACT | 1 cut(s) | 727 |
| SchI | GAGTC | 1 cut(s) | 1091 |
| ScrFI | CCNGG | 1 cut(s) | 588 |
| SfaNI | GCATC | 3 cut(s) | 61, 653, 671 |
| SfcI | CTRYAG | 2 cut(s) | 579, 1227 |
| SfuI | TTCGAA | 1 cut(s) | 381 |
| SinI | GGWCC | 1 cut(s) | 1285 |
| SpeI | ACTAGT | 1 cut(s) | 865 |
| SphI | GCATGC | 1 cut(s) | 771 |
| SsiI | CCGC | 3 cut(s) | 772, 785, 935 |
| SspI | AATATT | 1 cut(s) | 994 |
| SspMI | CTAG | 3 cut(s) | 219, 296, 866 |
| StyD4I | CCNGG | 1 cut(s) | 586 |
| StyI | CCWWGG | 1 cut(s) | 290 |
| TaaI | ACNGT | 2 cut(s) | 745, 801 |
| TaiI | ACGT | 1 cut(s) | 603 |
| TaqI | TCGA | 6 cut(s) | 244, 381, 442, 740, 839, 1275 |
| TaqII | GACCGA | 1 cut(s) | 495 |
| TatI | WGTACW | 2 cut(s) | 474, 725 |
| TauI | GCSGC | 1 cut(s) | 774 |
| TfiI | GAWTC | 6 cut(s) | 207, 521, 544, 551, 663, 886 |
| Tru1I | TTAA | 6 cut(s) | 35, 185, 401, 597, 1065, 1164 |
| Tru9I | TTAA | 6 cut(s) | 35, 185, 401, 597, 1065, 1164 |
| TscAI | CASTG | 2 cut(s) | 361, 588 |
| TseFI | GTSAC | 1 cut(s) | 507 |
| TseI | GCWGC | 2 cut(s) | 578, 641 |
| Tsp45I | GTSAC | 1 cut(s) | 507 |
| TspDTI | ATGAA | 4 cut(s) | 263, 593, 1179, 1193 |
| TspGWI | ACGGA | 1 cut(s) | 932 |
| TspRI | CASTG | 2 cut(s) | 361, 588 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 869 |
| VpaK11BI | GGWCC | 1 cut(s) | 1285 |
| XapI | RAATTY | 3 cut(s) | 788, 835, 1166 |
| XceI | RCATGY | 1 cut(s) | 771 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 555, 870 |
| XmiI | GTMKAC | 2 cut(s) | 340, 740 |
| XspI | CTAG | 3 cut(s) | 219, 296, 866 |
| ZrmI | AGTACT | 1 cut(s) | 727 |
| Zsp2I | ATGCAT | 1 cut(s) | 280 |