Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 12 - 97 | 1.1e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 50 |
| AcoI | YGGCCR | 1 cut(s) | 267 |
| AfaI | GTAC | 2 cut(s) | 33, 90 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 153, 154 |
| AflIII | ACRYGT | 1 cut(s) | 241 |
| AluBI | AGCT | 3 cut(s) | 41, 62, 75 |
| AluI | AGCT | 3 cut(s) | 41, 62, 75 |
| AoxI | GGCC | 1 cut(s) | 267 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 63 |
| BalI | TGGCCA | 1 cut(s) | 269 |
| BbvI | GCAGC | 1 cut(s) | 17 |
| BccI | CCATC | 2 cut(s) | 93, 154 |
| BfaI | CTAG | 2 cut(s) | 291, 305 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 153, 154 |
| BseGI | GGATG | 2 cut(s) | 104, 350 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 153, 154 |
| BseXI | GCAGC | 1 cut(s) | 17 |
| BshFI | GGCC | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 153, 154 |
| BsnI | GGCC | 1 cut(s) | 269 |
| Bsp1407I | TGTACA | 1 cut(s) | 31 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspACI | CCGC | 1 cut(s) | 50 |
| BspANI | GGCC | 1 cut(s) | 269 |
| BspQI | GCTCTTC | 1 cut(s) | 69 |
| BsrGI | TGTACA | 1 cut(s) | 31 |
| BssMI | GATC | 1 cut(s) | 301 |
| Bst4CI | ACNGT | 2 cut(s) | 36, 128 |
| Bst6I | CTCTTC | 1 cut(s) | 69 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 287 |
| BstAUI | TGTACA | 1 cut(s) | 31 |
| BstC8I | GCNNGC | 1 cut(s) | 73 |
| BstF5I | GGATG | 2 cut(s) | 104, 350 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 11, 47, 68, 287 |
| BstNSI | RCATGY | 1 cut(s) | 245 |
| BstV1I | GCAGC | 1 cut(s) | 17 |
| BsuRI | GGCC | 1 cut(s) | 269 |
| BtsCI | GGATG | 2 cut(s) | 104, 350 |
| Cac8I | GCNNGC | 1 cut(s) | 73 |
| Csp6I | GTAC | 2 cut(s) | 32, 89 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 246, 281 |
| CviAII | CATG | 1 cut(s) | 242 |
| CviJI | RGCY | 5 cut(s) | 41, 62, 75, 168, 269 |
| CviKI_1 | RGCY | 5 cut(s) | 41, 62, 75, 168, 269 |
| CviQI | GTAC | 2 cut(s) | 32, 89 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| EaeI | YGGCCR | 1 cut(s) | 267 |
| Eam1104I | CTCTTC | 1 cut(s) | 69 |
| EarI | CTCTTC | 1 cut(s) | 69 |
| EciI | GGCGGA | 1 cut(s) | 65 |
| FaeI | CATG | 1 cut(s) | 245 |
| FaiI | YATR | 7 cut(s) | 44, 110, 134, 210, 243, 247, 355 |
| FatI | CATG | 1 cut(s) | 241 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 2 cut(s) | 111, 357 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 2 cut(s) | 291, 305 |
| GluI | GCNGC | 1 cut(s) | 6 |
| HaeIII | GGCC | 1 cut(s) | 269 |
| Hin1II | CATG | 1 cut(s) | 245 |
| HinfI | GANTC | 1 cut(s) | 119 |
| Hpy188I | TCNGA | 2 cut(s) | 124, 175 |
| Hpy188III | TCNNGA | 3 cut(s) | 251, 305, 342 |
| HpyCH4III | ACNGT | 2 cut(s) | 36, 128 |
| HpyCH4V | TGCA | 1 cut(s) | 86 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 11, 47, 68, 287 |
| Hsp92II | CATG | 1 cut(s) | 245 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LguI | GCTCTTC | 1 cut(s) | 69 |
| LpnPI | CCDG | 3 cut(s) | 32, 85, 343 |
| Lsp1109I | GCAGC | 1 cut(s) | 17 |
| MaeI | CTAG | 2 cut(s) | 291, 305 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 1 cut(s) | 56 |
| MlsI | TGGCCA | 1 cut(s) | 269 |
| MluCI | AATT | 3 cut(s) | 186, 214, 233 |
| MluNI | TGGCCA | 1 cut(s) | 269 |
| MlyI | GAGTC | 1 cut(s) | 128 |
| MmeI | TCCRAC | 1 cut(s) | 275 |
| MnlI | CCTC | 4 cut(s) | 106, 145, 157, 187 |
| Mox20I | TGGCCA | 1 cut(s) | 269 |
| MroXI | GAANNNNTTC | 1 cut(s) | 63 |
| MscI | TGGCCA | 1 cut(s) | 269 |
| MseI | TTAA | 1 cut(s) | 141 |
| Msp20I | TGGCCA | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 11, 47, 68, 287 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIII | CATG | 1 cut(s) | 245 |
| NspI | RCATGY | 1 cut(s) | 245 |
| PciI | ACATGT | 1 cut(s) | 241 |
| PciSI | GCTCTTC | 1 cut(s) | 69 |
| PdmI | GAANNNNTTC | 1 cut(s) | 63 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PleI | GAGTC | 1 cut(s) | 127 |
| PpsI | GAGTC | 1 cut(s) | 127 |
| PscI | ACATGT | 1 cut(s) | 241 |
| RsaI | GTAC | 2 cut(s) | 33, 90 |
| RsaNI | GTAC | 2 cut(s) | 32, 89 |
| SapI | GCTCTTC | 1 cut(s) | 69 |
| SaqAI | TTAA | 1 cut(s) | 141 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| SchI | GAGTC | 1 cut(s) | 128 |
| SetI | ASST | 7 cut(s) | 43, 64, 77, 117, 209, 278, 332 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| Sse9I | AATT | 3 cut(s) | 186, 214, 233 |
| SsiI | CCGC | 1 cut(s) | 50 |
| SspMI | CTAG | 2 cut(s) | 291, 305 |
| TaaI | ACNGT | 2 cut(s) | 36, 128 |
| TaqI | TCGA | 2 cut(s) | 184, 238 |
| TasI | AATT | 3 cut(s) | 186, 214, 233 |
| TatI | WGTACW | 2 cut(s) | 31, 88 |
| Tru1I | TTAA | 1 cut(s) | 141 |
| Tru9I | TTAA | 1 cut(s) | 141 |
| TseI | GCWGC | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 304 |
| XceI | RCATGY | 1 cut(s) | 245 |
| XmnI | GAANNNNTTC | 1 cut(s) | 63 |
| XspI | CTAG | 2 cut(s) | 291, 305 |