Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 90 - 211 | 1.2e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 293 |
| Acc36I | ACCTGC | 1 cut(s) | 293 |
| AccB1I | GGYRCC | 1 cut(s) | 305 |
| AccII | CGCG | 1 cut(s) | 407 |
| AcsI | RAATTY | 2 cut(s) | 6, 100 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 162, 251 |
| AgsI | TTSAA | 1 cut(s) | 48 |
| AjnI | CCWGG | 1 cut(s) | 161 |
| AluBI | AGCT | 6 cut(s) | 125, 218, 386, 493, 614, 653 |
| AluI | AGCT | 6 cut(s) | 125, 218, 386, 493, 614, 653 |
| Alw26I | GTCTC | 2 cut(s) | 321, 458 |
| AoxI | GGCC | 1 cut(s) | 646 |
| ApeKI | GCWGC | 4 cut(s) | 448, 490, 611, 626 |
| ApoI | RAATTY | 2 cut(s) | 6, 100 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 457, 489 |
| AspA2I | CCTAGG | 1 cut(s) | 544 |
| AvrII | CCTAGG | 1 cut(s) | 544 |
| BanI | GGYRCC | 1 cut(s) | 305 |
| BbsI | GAAGAC | 2 cut(s) | 36, 546 |
| BbvI | GCAGC | 4 cut(s) | 460, 502, 613, 623 |
| BccI | CCATC | 1 cut(s) | 269 |
| BciT130I | CCWGG | 1 cut(s) | 163 |
| BclI | TGATCA | 1 cut(s) | 202 |
| BcoDI | GTCTC | 2 cut(s) | 321, 458 |
| BfaI | CTAG | 7 cut(s) | 105, 126, 365, 498, 519, 545, 718 |
| BfmI | CTRYAG | 1 cut(s) | 642 |
| BfuAI | ACCTGC | 1 cut(s) | 293 |
| BisI | GCNGC | 4 cut(s) | 449, 491, 612, 627 |
| BlnI | CCTAGG | 1 cut(s) | 544 |
| BlpI | GCTNAGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 4 cut(s) | 450, 492, 613, 628 |
| Bme1390I | CCNGG | 1 cut(s) | 163 |
| BmiI | GGNNCC | 2 cut(s) | 307, 426 |
| BmrFI | CCNGG | 1 cut(s) | 163 |
| BmrI | ACTGGG | 1 cut(s) | 533 |
| BmsI | GCATC | 2 cut(s) | 589, 644 |
| BmuI | ACTGGG | 1 cut(s) | 533 |
| BpiI | GAAGAC | 2 cut(s) | 36, 546 |
| BpmI | CTGGAG | 1 cut(s) | 318 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 387 |
| BsaJI | CCNNGG | 1 cut(s) | 544 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 162, 251 |
| Bse1I | ACTGG | 1 cut(s) | 528 |
| Bse3DI | GCAATG | 1 cut(s) | 563 |
| BseBI | CCWGG | 1 cut(s) | 163 |
| BseDI | CCNNGG | 1 cut(s) | 544 |
| BseGI | GGATG | 2 cut(s) | 145, 260 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 162, 251 |
| BseMI | GCAATG | 1 cut(s) | 563 |
| BseMII | CTCAG | 2 cut(s) | 378, 396 |
| BseNI | ACTGG | 1 cut(s) | 528 |
| BseRI | GAGGAG | 1 cut(s) | 228 |
| BseXI | GCAGC | 4 cut(s) | 460, 502, 613, 623 |
| BsgI | GTGCAG | 1 cut(s) | 612 |
| Bsh1236I | CGCG | 1 cut(s) | 407 |
| BshFI | GGCC | 1 cut(s) | 648 |
| BshNI | GGYRCC | 1 cut(s) | 305 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 162, 251 |
| BsmAI | GTCTC | 2 cut(s) | 321, 458 |
| BsnI | GGCC | 1 cut(s) | 648 |
| Bsp143I | GATC | 2 cut(s) | 58, 202 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 387 |
| BspANI | GGCC | 1 cut(s) | 648 |
| BspCNI | CTCAG | 2 cut(s) | 379, 395 |
| BspFNI | CGCG | 1 cut(s) | 407 |
| BspHI | TCATGA | 2 cut(s) | 685, 700 |
| BspLI | GGNNCC | 2 cut(s) | 307, 426 |
| BspMI | ACCTGC | 1 cut(s) | 293 |
| BspT107I | GGYRCC | 1 cut(s) | 305 |
| BsrDI | GCAATG | 1 cut(s) | 563 |
| BsrI | ACTGG | 1 cut(s) | 528 |
| BssECI | CCNNGG | 1 cut(s) | 544 |
| BssMI | GATC | 2 cut(s) | 58, 202 |
| BssT1I | CCWWGG | 1 cut(s) | 544 |
| Bst2UI | CCWGG | 1 cut(s) | 163 |
| Bst4CI | ACNGT | 1 cut(s) | 332 |
| Bst6I | CTCTTC | 1 cut(s) | 589 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 445 |
| BstC8I | GCNNGC | 3 cut(s) | 393, 409, 453 |
| BstDEI | CTNAG | 2 cut(s) | 382, 387 |
| BstF5I | GGATG | 2 cut(s) | 145, 260 |
| BstFNI | CGCG | 1 cut(s) | 407 |
| BstKTI | GATC | 2 cut(s) | 61, 205 |
| BstMAI | GTCTC | 2 cut(s) | 321, 458 |
| BstMBI | GATC | 2 cut(s) | 58, 202 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 299, 392, 445, 608, 632 |
| BstNI | CCWGG | 1 cut(s) | 163 |
| BstNSI | RCATGY | 1 cut(s) | 395 |
| BstSCI | CCNGG | 1 cut(s) | 161 |
| BstSFI | CTRYAG | 1 cut(s) | 642 |
| BstUI | CGCG | 1 cut(s) | 407 |
| BstV1I | GCAGC | 4 cut(s) | 460, 502, 613, 623 |
| BstV2I | GAAGAC | 2 cut(s) | 36, 546 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 316 |
| BsuRI | GGCC | 1 cut(s) | 648 |
| BtsCI | GGATG | 2 cut(s) | 145, 260 |
| BveI | ACCTGC | 1 cut(s) | 293 |
| Cac8I | GCNNGC | 3 cut(s) | 393, 409, 453 |
| CciI | TCATGA | 2 cut(s) | 685, 700 |
| CviAII | CATG | 4 cut(s) | 206, 392, 686, 701 |
| DdeI | CTNAG | 2 cut(s) | 382, 387 |
| DpnI | GATC | 2 cut(s) | 60, 204 |
| DpnII | GATC | 2 cut(s) | 58, 202 |
| Eam1104I | CTCTTC | 1 cut(s) | 589 |
| EarI | CTCTTC | 1 cut(s) | 589 |
| Eco130I | CCWWGG | 1 cut(s) | 544 |
| EcoRI | GAATTC | 2 cut(s) | 6, 100 |
| EcoRII | CCWGG | 1 cut(s) | 161 |
| EcoT14I | CCWWGG | 1 cut(s) | 544 |
| ErhI | CCWWGG | 1 cut(s) | 544 |
| FaeI | CATG | 4 cut(s) | 209, 395, 689, 704 |
| FatI | CATG | 4 cut(s) | 205, 391, 685, 700 |
| FbaI | TGATCA | 1 cut(s) | 202 |
| Fnu4HI | GCNGC | 4 cut(s) | 449, 491, 612, 627 |
| FokI | GGATG | 2 cut(s) | 152, 267 |
| Fsp4HI | GCNGC | 4 cut(s) | 449, 491, 612, 627 |
| FspBI | CTAG | 7 cut(s) | 105, 126, 365, 498, 519, 545, 718 |
| GluI | GCNGC | 4 cut(s) | 449, 491, 612, 627 |
| GsuI | CTGGAG | 1 cut(s) | 318 |
| HaeIII | GGCC | 1 cut(s) | 648 |
| Hin1II | CATG | 4 cut(s) | 209, 395, 689, 704 |
| HincII | GTYRAC | 1 cut(s) | 511 |
| HindII | GTYRAC | 1 cut(s) | 511 |
| HinfI | GANTC | 1 cut(s) | 470 |
| HpaI | GTTAAC | 1 cut(s) | 511 |
| Hpy166II | GTNNAC | 1 cut(s) | 511 |
| Hpy188I | TCNGA | 1 cut(s) | 579 |
| Hpy188III | TCNNGA | 8 cut(s) | 11, 105, 200, 297, 336, 519, 686, 701 |
| Hpy8I | GTNNAC | 1 cut(s) | 511 |
| HpyAV | CCTTC | 3 cut(s) | 110, 354, 684 |
| HpyCH4III | ACNGT | 1 cut(s) | 332 |
| HpyCH4V | TGCA | 6 cut(s) | 411, 448, 455, 586, 602, 629 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 299, 392, 445, 608, 632 |
| HpyF3I | CTNAG | 2 cut(s) | 382, 387 |
| Hsp92II | CATG | 4 cut(s) | 209, 395, 689, 704 |
| Ksp22I | TGATCA | 1 cut(s) | 202 |
| KspAI | GTTAAC | 1 cut(s) | 511 |
| Kzo9I | GATC | 2 cut(s) | 58, 202 |
| LmnI | GCTCC | 3 cut(s) | 215, 299, 424 |
| LpnPI | CCDG | 8 cut(s) | 148, 175, 282, 288, 321, 465, 509, 630 |
| Lsp1109I | GCAGC | 4 cut(s) | 460, 502, 613, 623 |
| LweI | GCATC | 2 cut(s) | 589, 644 |
| MaeI | CTAG | 7 cut(s) | 105, 126, 365, 498, 519, 545, 718 |
| MaeIII | GTNAC | 1 cut(s) | 286 |
| MalI | GATC | 2 cut(s) | 60, 204 |
| MboI | GATC | 2 cut(s) | 58, 202 |
| MboII | GAAGA | 5 cut(s) | 36, 551, 606, 657, 674 |
| MfeI | CAATTG | 2 cut(s) | 249, 456 |
| MluCI | AATT | 6 cut(s) | 6, 100, 187, 249, 432, 456 |
| MmeI | TCCRAC | 1 cut(s) | 537 |
| MnlI | CCTC | 5 cut(s) | 206, 220, 255, 409, 682 |
| MseI | TTAA | 2 cut(s) | 483, 510 |
| MspA1I | CMGCKG | 1 cut(s) | 386 |
| MspR9I | CCNGG | 1 cut(s) | 163 |
| MunI | CAATTG | 2 cut(s) | 249, 456 |
| MvaI | CCWGG | 1 cut(s) | 163 |
| MvnI | CGCG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 299, 392, 445, 608, 632 |
| NdeII | GATC | 2 cut(s) | 58, 202 |
| NlaIII | CATG | 4 cut(s) | 209, 395, 689, 704 |
| NlaIV | GGNNCC | 2 cut(s) | 307, 426 |
| NmuCI | GTSAC | 1 cut(s) | 286 |
| NspI | RCATGY | 1 cut(s) | 395 |
| PaeI | GCATGC | 1 cut(s) | 395 |
| PagI | TCATGA | 2 cut(s) | 685, 700 |
| PaqCI | CACCTGC | 1 cut(s) | 293 |
| PfeI | GAWTC | 1 cut(s) | 470 |
| PkrI | GCNGC | 4 cut(s) | 450, 492, 613, 628 |
| Psp6I | CCWGG | 1 cut(s) | 161 |
| PspGI | CCWGG | 1 cut(s) | 161 |
| PspN4I | GGNNCC | 2 cut(s) | 307, 426 |
| PvuII | CAGCTG | 1 cut(s) | 386 |
| SaqAI | TTAA | 2 cut(s) | 483, 510 |
| SatI | GCNGC | 4 cut(s) | 449, 491, 612, 627 |
| Sau3AI | GATC | 2 cut(s) | 58, 202 |
| ScrFI | CCNGG | 1 cut(s) | 163 |
| SfaNI | GCATC | 2 cut(s) | 589, 644 |
| SfcI | CTRYAG | 1 cut(s) | 642 |
| SphI | GCATGC | 1 cut(s) | 395 |
| Sse9I | AATT | 6 cut(s) | 6, 100, 187, 249, 432, 456 |
| SspMI | CTAG | 7 cut(s) | 105, 126, 365, 498, 519, 545, 718 |
| StyD4I | CCNGG | 1 cut(s) | 161 |
| StyI | CCWWGG | 1 cut(s) | 544 |
| TaaI | ACNGT | 1 cut(s) | 332 |
| TaqI | TCGA | 1 cut(s) | 32 |
| TasI | AATT | 6 cut(s) | 6, 100, 187, 249, 432, 456 |
| TfiI | GAWTC | 1 cut(s) | 470 |
| Tru1I | TTAA | 2 cut(s) | 483, 510 |
| Tru9I | TTAA | 2 cut(s) | 483, 510 |
| TseFI | GTSAC | 1 cut(s) | 286 |
| TseI | GCWGC | 4 cut(s) | 448, 490, 611, 626 |
| Tsp45I | GTSAC | 1 cut(s) | 286 |
| TspDTI | ATGAA | 2 cut(s) | 674, 717 |
| XapI | RAATTY | 2 cut(s) | 6, 100 |
| XbaI | TCTAGA | 2 cut(s) | 104, 518 |
| XceI | RCATGY | 1 cut(s) | 395 |
| XmaJI | CCTAGG | 1 cut(s) | 544 |
| XspI | CTAG | 7 cut(s) | 105, 126, 365, 498, 519, 545, 718 |