ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 73 |
| AccIII | TCCGGA | 1 cut(s) | 240 |
| AciI | CCGC | 1 cut(s) | 133 |
| AcoI | YGGCCR | 1 cut(s) | 33 |
| AcsI | RAATTY | 1 cut(s) | 180 |
| AcvI | CACGTG | 2 cut(s) | 195, 396 |
| AfaI | GTAC | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 139, 220, 247, 396 |
| AflIII | ACRYGT | 1 cut(s) | 393 |
| AgsI | TTSAA | 1 cut(s) | 331 |
| AjnI | CCWGG | 1 cut(s) | 378 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 169, 201 |
| AluBI | AGCT | 3 cut(s) | 103, 253, 424 |
| AluI | AGCT | 3 cut(s) | 103, 253, 424 |
| Alw26I | GTCTC | 2 cut(s) | 315, 378 |
| Aor13HI | TCCGGA | 1 cut(s) | 240 |
| AoxI | GGCC | 1 cut(s) | 33 |
| ApeKI | GCWGC | 1 cut(s) | 135 |
| ApoI | RAATTY | 1 cut(s) | 180 |
| AsuHPI | GGTGA | 1 cut(s) | 365 |
| BaeGI | GKGCMC | 1 cut(s) | 78 |
| BanI | GGYRCC | 1 cut(s) | 73 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 323, 355 |
| BbrPI | CACGTG | 2 cut(s) | 195, 396 |
| BbsI | GAAGAC | 1 cut(s) | 26 |
| BbvI | GCAGC | 1 cut(s) | 122 |
| BciT130I | CCWGG | 1 cut(s) | 380 |
| BclI | TGATCA | 1 cut(s) | 51 |
| BcoDI | GTCTC | 2 cut(s) | 315, 378 |
| BfaI | CTAG | 3 cut(s) | 233, 369, 439 |
| BisI | GCNGC | 1 cut(s) | 136 |
| BlsI | GCNGC | 1 cut(s) | 137 |
| Bme1390I | CCNGG | 1 cut(s) | 380 |
| BmiI | GGNNCC | 1 cut(s) | 75 |
| BmrFI | CCNGG | 1 cut(s) | 380 |
| BmsI | GCATC | 2 cut(s) | 121, 310 |
| BpiI | GAAGAC | 1 cut(s) | 26 |
| BpmI | CTGGAG | 1 cut(s) | 307 |
| BsaAI | YACGTR | 2 cut(s) | 195, 396 |
| BsaJI | CCNNGG | 1 cut(s) | 379 |
| BsaWI | WCCGGW | 1 cut(s) | 240 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 139, 220, 247, 396 |
| BseAI | TCCGGA | 1 cut(s) | 240 |
| BseBI | CCWGG | 1 cut(s) | 380 |
| BseDI | CCNNGG | 1 cut(s) | 379 |
| BseGI | GGATG | 1 cut(s) | 301 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 139, 220, 247, 396 |
| BseMII | CTCAG | 2 cut(s) | 135, 297 |
| BseRI | GAGGAG | 2 cut(s) | 236, 415 |
| BseSI | GKGCMC | 1 cut(s) | 78 |
| BseXI | GCAGC | 1 cut(s) | 122 |
| BshFI | GGCC | 1 cut(s) | 35 |
| BshNI | GGYRCC | 1 cut(s) | 73 |
| BsiSI | CCGG | 2 cut(s) | 36, 241 |
| BslFI | GGGAC | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 139, 220, 247, 396 |
| BsmAI | GTCTC | 2 cut(s) | 315, 378 |
| BsmFI | GGGAC | 1 cut(s) | 197 |
| BsnI | GGCC | 1 cut(s) | 35 |
| Bsp1286I | GDGCHC | 1 cut(s) | 78 |
| Bsp13I | TCCGGA | 1 cut(s) | 240 |
| Bsp1407I | TGTACA | 1 cut(s) | 64 |
| Bsp143I | GATC | 1 cut(s) | 51 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspANI | GGCC | 1 cut(s) | 35 |
| BspCNI | CTCAG | 2 cut(s) | 136, 298 |
| BspEI | TCCGGA | 1 cut(s) | 240 |
| BspHI | TCATGA | 1 cut(s) | 87 |
| BspLI | GGNNCC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 1 cut(s) | 73 |
| BsrGI | TGTACA | 1 cut(s) | 64 |
| BssECI | CCNNGG | 1 cut(s) | 379 |
| BssMI | GATC | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 1 cut(s) | 380 |
| Bst4CI | ACNGT | 1 cut(s) | 353 |
| BstAUI | TGTACA | 1 cut(s) | 64 |
| BstBAI | YACGTR | 2 cut(s) | 195, 396 |
| BstC8I | GCNNGC | 1 cut(s) | 366 |
| BstDEI | CTNAG | 4 cut(s) | 26, 144, 271, 306 |
| BstF5I | GGATG | 1 cut(s) | 301 |
| BstKTI | GATC | 1 cut(s) | 54 |
| BstMAI | GTCTC | 2 cut(s) | 315, 378 |
| BstMBI | GATC | 1 cut(s) | 51 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 109, 272 |
| BstNI | CCWGG | 1 cut(s) | 380 |
| BstNSI | RCATGY | 1 cut(s) | 368 |
| BstSCI | CCNGG | 1 cut(s) | 378 |
| BstSLI | GKGCMC | 1 cut(s) | 78 |
| BstV1I | GCAGC | 1 cut(s) | 122 |
| BstV2I | GAAGAC | 1 cut(s) | 26 |
| BsuRI | GGCC | 1 cut(s) | 35 |
| BtsCI | GGATG | 1 cut(s) | 301 |
| Cac8I | GCNNGC | 1 cut(s) | 366 |
| CciI | TCATGA | 1 cut(s) | 87 |
| CseI | GACGC | 1 cut(s) | 199 |
| Csp6I | GTAC | 1 cut(s) | 65 |
| CviAII | CATG | 4 cut(s) | 31, 88, 139, 365 |
| CviJI | RGCY | 9 cut(s) | 35, 103, 143, 190, 253, 275, 285, 424, 438 |
| CviKI_1 | RGCY | 9 cut(s) | 35, 103, 143, 190, 253, 275, 285, 424, 438 |
| CviQI | GTAC | 1 cut(s) | 65 |
| DdeI | CTNAG | 4 cut(s) | 26, 144, 271, 306 |
| DpnI | GATC | 1 cut(s) | 53 |
| DpnII | GATC | 1 cut(s) | 51 |
| EaeI | YGGCCR | 1 cut(s) | 33 |
| Eco72I | CACGTG | 2 cut(s) | 195, 396 |
| EcoRII | CCWGG | 1 cut(s) | 378 |
| EcoT22I | ATGCAT | 1 cut(s) | 366 |
| FaeI | CATG | 4 cut(s) | 34, 91, 142, 368 |
| FaiI | YATR | 7 cut(s) | 32, 82, 84, 89, 140, 248, 366 |
| FaqI | GGGAC | 1 cut(s) | 197 |
| FatI | CATG | 4 cut(s) | 30, 87, 138, 364 |
| FbaI | TGATCA | 1 cut(s) | 51 |
| Fnu4HI | GCNGC | 1 cut(s) | 136 |
| FokI | GGATG | 1 cut(s) | 288 |
| Fsp4HI | GCNGC | 1 cut(s) | 136 |
| FspBI | CTAG | 3 cut(s) | 233, 369, 439 |
| GluI | GCNGC | 1 cut(s) | 136 |
| GsuI | CTGGAG | 1 cut(s) | 307 |
| HaeIII | GGCC | 1 cut(s) | 35 |
| HapII | CCGG | 2 cut(s) | 36, 241 |
| HgaI | GACGC | 1 cut(s) | 199 |
| Hin1II | CATG | 4 cut(s) | 34, 91, 142, 368 |
| HinfI | GANTC | 3 cut(s) | 161, 308, 386 |
| HpaII | CCGG | 2 cut(s) | 36, 241 |
| HphI | GGTGA | 1 cut(s) | 365 |
| Hpy166II | GTNNAC | 2 cut(s) | 230, 376 |
| Hpy188I | TCNGA | 1 cut(s) | 166 |
| Hpy188III | TCNNGA | 5 cut(s) | 88, 122, 214, 241, 305 |
| Hpy8I | GTNNAC | 2 cut(s) | 230, 376 |
| HpyAV | CCTTC | 3 cut(s) | 7, 211, 325 |
| HpyCH4III | ACNGT | 1 cut(s) | 353 |
| HpyCH4IV | ACGT | 2 cut(s) | 194, 395 |
| HpyCH4V | TGCA | 3 cut(s) | 130, 138, 364 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 109, 272 |
| HpyF3I | CTNAG | 4 cut(s) | 26, 144, 271, 306 |
| HpySE526I | ACGT | 2 cut(s) | 194, 395 |
| Hsp92II | CATG | 4 cut(s) | 34, 91, 142, 368 |
| Kpn2I | TCCGGA | 1 cut(s) | 240 |
| Ksp22I | TGATCA | 1 cut(s) | 51 |
| Kzo9I | GATC | 1 cut(s) | 51 |
| LmnI | GCTCC | 1 cut(s) | 250 |
| LpnPI | CCDG | 7 cut(s) | 49, 254, 266, 271, 318, 365, 392 |
| Lsp1109I | GCAGC | 1 cut(s) | 122 |
| LweI | GCATC | 2 cut(s) | 121, 310 |
| MaeI | CTAG | 3 cut(s) | 233, 369, 439 |
| MaeII | ACGT | 2 cut(s) | 194, 395 |
| MalI | GATC | 1 cut(s) | 53 |
| MboI | GATC | 1 cut(s) | 51 |
| MboII | GAAGA | 2 cut(s) | 16, 31 |
| MhlI | GDGCHC | 1 cut(s) | 78 |
| MluCI | AATT | 3 cut(s) | 7, 125, 180 |
| MlyI | GAGTC | 2 cut(s) | 317, 380 |
| MnlI | CCTC | 5 cut(s) | 214, 217, 282, 291, 393 |
| Mph1103I | ATGCAT | 1 cut(s) | 366 |
| MroI | TCCGGA | 1 cut(s) | 240 |
| MseI | TTAA | 3 cut(s) | 258, 359, 407 |
| MslI | CAYNNNNRTG | 1 cut(s) | 369 |
| MspA1I | CMGCKG | 1 cut(s) | 135 |
| MspI | CCGG | 2 cut(s) | 36, 241 |
| MspR9I | CCNGG | 1 cut(s) | 380 |
| MvaI | CCWGG | 1 cut(s) | 380 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 109, 272 |
| NdeII | GATC | 1 cut(s) | 51 |
| NlaIII | CATG | 4 cut(s) | 34, 91, 142, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 75 |
| NsiI | ATGCAT | 1 cut(s) | 366 |
| NspI | RCATGY | 1 cut(s) | 368 |
| PaeI | GCATGC | 1 cut(s) | 368 |
| PagI | TCATGA | 1 cut(s) | 87 |
| PfeI | GAWTC | 1 cut(s) | 161 |
| PkrI | GCNGC | 1 cut(s) | 137 |
| PleI | GAGTC | 2 cut(s) | 316, 380 |
| PmaCI | CACGTG | 2 cut(s) | 195, 396 |
| PmlI | CACGTG | 2 cut(s) | 195, 396 |
| PpsI | GAGTC | 2 cut(s) | 316, 380 |
| Ppu21I | YACGTR | 2 cut(s) | 195, 396 |
| Psp6I | CCWGG | 1 cut(s) | 378 |
| PspCI | CACGTG | 2 cut(s) | 195, 396 |
| PspGI | CCWGG | 1 cut(s) | 378 |
| PspN4I | GGNNCC | 1 cut(s) | 75 |
| RsaI | GTAC | 1 cut(s) | 66 |
| RsaNI | GTAC | 1 cut(s) | 65 |
| RseI | CAYNNNNRTG | 1 cut(s) | 369 |
| SaqAI | TTAA | 3 cut(s) | 258, 359, 407 |
| SatI | GCNGC | 1 cut(s) | 136 |
| Sau3AI | GATC | 1 cut(s) | 51 |
| SchI | GAGTC | 2 cut(s) | 317, 380 |
| ScrFI | CCNGG | 1 cut(s) | 380 |
| SduI | GDGCHC | 1 cut(s) | 78 |
| SetI | ASST | 8 cut(s) | 105, 197, 238, 255, 293, 381, 398, 426 |
| SfaNI | GCATC | 2 cut(s) | 121, 310 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 369 |
| SphI | GCATGC | 1 cut(s) | 368 |
| Sse9I | AATT | 3 cut(s) | 7, 125, 180 |
| SsiI | CCGC | 1 cut(s) | 133 |
| SspMI | CTAG | 3 cut(s) | 233, 369, 439 |
| StyD4I | CCNGG | 1 cut(s) | 378 |
| TaaI | ACNGT | 1 cut(s) | 353 |
| TaiI | ACGT | 2 cut(s) | 197, 398 |
| TasI | AATT | 3 cut(s) | 7, 125, 180 |
| TatI | WGTACW | 1 cut(s) | 64 |
| TfiI | GAWTC | 1 cut(s) | 161 |
| Tru1I | TTAA | 3 cut(s) | 258, 359, 407 |
| Tru9I | TTAA | 3 cut(s) | 258, 359, 407 |
| TseI | GCWGC | 1 cut(s) | 135 |
| TspDTI | ATGAA | 3 cut(s) | 17, 173, 425 |
| XapI | RAATTY | 1 cut(s) | 180 |
| XceI | RCATGY | 1 cut(s) | 368 |
| XspI | CTAG | 3 cut(s) | 233, 369, 439 |
| Zsp2I | ATGCAT | 1 cut(s) | 366 |