Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 135 - 202 | 5.9e-17 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 553 |
| AcsI | RAATTY | 1 cut(s) | 496 |
| AfaI | GTAC | 2 cut(s) | 215, 435 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 400, 553 |
| AgsI | TTSAA | 3 cut(s) | 298, 454, 508 |
| AjiI | CACGTC | 1 cut(s) | 196 |
| AjnI | CCWGG | 1 cut(s) | 209 |
| AluBI | AGCT | 4 cut(s) | 20, 166, 189, 504 |
| AluI | AGCT | 4 cut(s) | 20, 166, 189, 504 |
| AoxI | GGCC | 1 cut(s) | 447 |
| ApeKI | GCWGC | 3 cut(s) | 353, 470, 641 |
| ApoI | RAATTY | 1 cut(s) | 496 |
| AseI | ATTAAT | 1 cut(s) | 579 |
| AsuHPI | GGTGA | 1 cut(s) | 71 |
| BbsI | GAAGAC | 3 cut(s) | 304, 419, 473 |
| BbvI | GCAGC | 3 cut(s) | 340, 482, 628 |
| BccI | CCATC | 2 cut(s) | 42, 56 |
| BciT130I | CCWGG | 1 cut(s) | 211 |
| BfaI | CTAG | 1 cut(s) | 114 |
| BfmI | CTRYAG | 2 cut(s) | 273, 486 |
| BisI | GCNGC | 3 cut(s) | 354, 471, 642 |
| BlsI | GCNGC | 3 cut(s) | 355, 472, 643 |
| Bme1390I | CCNGG | 1 cut(s) | 211 |
| BmgBI | CACGTC | 1 cut(s) | 196 |
| BmiI | GGNNCC | 1 cut(s) | 86 |
| BmrFI | CCNGG | 1 cut(s) | 211 |
| BmsI | GCATC | 3 cut(s) | 133, 278, 653 |
| BpiI | GAAGAC | 3 cut(s) | 304, 419, 473 |
| BpuEI | CTTGAG | 1 cut(s) | 207 |
| BsaBI | GATNNNNATC | 1 cut(s) | 108 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 400, 553 |
| Bse1I | ACTGG | 2 cut(s) | 98, 575 |
| Bse8I | GATNNNNATC | 1 cut(s) | 108 |
| BseBI | CCWGG | 1 cut(s) | 211 |
| BseJI | GATNNNNATC | 1 cut(s) | 108 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 400, 553 |
| BseNI | ACTGG | 2 cut(s) | 98, 575 |
| BseRI | GAGGAG | 3 cut(s) | 120, 123, 126 |
| BseXI | GCAGC | 3 cut(s) | 340, 482, 628 |
| BseYI | CCCAGC | 1 cut(s) | 189 |
| BsgI | GTGCAG | 1 cut(s) | 218 |
| BshFI | GGCC | 1 cut(s) | 449 |
| BslFI | GGGAC | 1 cut(s) | 206 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 400, 553 |
| BsmFI | GGGAC | 1 cut(s) | 206 |
| BsmI | GAATGC | 3 cut(s) | 249, 460, 662 |
| BsnI | GGCC | 1 cut(s) | 449 |
| Bsp143I | GATC | 1 cut(s) | 277 |
| BspANI | GGCC | 1 cut(s) | 449 |
| BspLI | GGNNCC | 1 cut(s) | 86 |
| BsrI | ACTGG | 2 cut(s) | 98, 575 |
| BssMI | GATC | 1 cut(s) | 277 |
| Bst2UI | CCWGG | 1 cut(s) | 211 |
| Bst4CI | ACNGT | 1 cut(s) | 326 |
| BstKTI | GATC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 277 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 289, 455, 510 |
| BstNI | CCWGG | 1 cut(s) | 211 |
| BstSCI | CCNGG | 1 cut(s) | 209 |
| BstSFI | CTRYAG | 2 cut(s) | 273, 486 |
| BstV1I | GCAGC | 3 cut(s) | 340, 482, 628 |
| BstV2I | GAAGAC | 3 cut(s) | 304, 419, 473 |
| BsuRI | GGCC | 1 cut(s) | 449 |
| BtrI | CACGTC | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 3 cut(s) | 331, 568, 636 |
| CsiI | ACCWGGT | 1 cut(s) | 209 |
| Csp6I | GTAC | 2 cut(s) | 214, 434 |
| CviAII | CATG | 3 cut(s) | 459, 548, 653 |
| CviQI | GTAC | 2 cut(s) | 214, 434 |
| DpnI | GATC | 1 cut(s) | 279 |
| DpnII | GATC | 1 cut(s) | 277 |
| DraI | TTTAAA | 1 cut(s) | 399 |
| EcoRII | CCWGG | 1 cut(s) | 209 |
| EcoT22I | ATGCAT | 3 cut(s) | 271, 460, 654 |
| FaeI | CATG | 3 cut(s) | 462, 551, 656 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 296, 328, 434, 466, 602, 634 |
| FaqI | GGGAC | 1 cut(s) | 206 |
| FatI | CATG | 3 cut(s) | 458, 547, 652 |
| Fnu4HI | GCNGC | 3 cut(s) | 354, 471, 642 |
| Fsp4HI | GCNGC | 3 cut(s) | 354, 471, 642 |
| FspBI | CTAG | 1 cut(s) | 114 |
| GluI | GCNGC | 3 cut(s) | 354, 471, 642 |
| GsaI | CCCAGC | 1 cut(s) | 193 |
| HaeIII | GGCC | 1 cut(s) | 449 |
| Hin1II | CATG | 3 cut(s) | 462, 551, 656 |
| HincII | GTYRAC | 1 cut(s) | 69 |
| HindII | GTYRAC | 1 cut(s) | 69 |
| HindIII | AAGCTT | 1 cut(s) | 502 |
| HinfI | GANTC | 1 cut(s) | 97 |
| HphI | GGTGA | 1 cut(s) | 71 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 566 |
| Hpy188I | TCNGA | 1 cut(s) | 163 |
| Hpy188III | TCNNGA | 3 cut(s) | 101, 140, 409 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 566 |
| HpyAV | CCTTC | 2 cut(s) | 132, 298 |
| HpyCH4III | ACNGT | 1 cut(s) | 326 |
| HpyCH4IV | ACGT | 1 cut(s) | 195 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 199, 269, 458, 470, 593, 644, 652 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 289, 455, 510 |
| HpySE526I | ACGT | 1 cut(s) | 195 |
| Hsp92II | CATG | 3 cut(s) | 462, 551, 656 |
| Kzo9I | GATC | 1 cut(s) | 277 |
| LmnI | GCTCC | 2 cut(s) | 151, 186 |
| LpnPI | CCDG | 8 cut(s) | 79, 86, 175, 196, 223, 394, 474, 556 |
| Lsp1109I | GCAGC | 3 cut(s) | 340, 482, 628 |
| LweI | GCATC | 3 cut(s) | 133, 278, 653 |
| MabI | ACCWGGT | 1 cut(s) | 209 |
| MaeI | CTAG | 1 cut(s) | 114 |
| MaeII | ACGT | 1 cut(s) | 195 |
| MaeIII | GTNAC | 1 cut(s) | 178 |
| MalI | GATC | 1 cut(s) | 279 |
| MboI | GATC | 1 cut(s) | 277 |
| MboII | GAAGA | 4 cut(s) | 117, 304, 424, 473 |
| MluCI | AATT | 3 cut(s) | 465, 496, 580 |
| MnlI | CCTC | 5 cut(s) | 141, 144, 147, 387, 550 |
| Mph1103I | ATGCAT | 3 cut(s) | 271, 460, 654 |
| MseI | TTAA | 3 cut(s) | 398, 500, 579 |
| MspR9I | CCNGG | 1 cut(s) | 211 |
| Mva1269I | GAATGC | 3 cut(s) | 249, 460, 662 |
| MvaI | CCWGG | 1 cut(s) | 211 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 289, 455, 510 |
| NdeII | GATC | 1 cut(s) | 277 |
| NlaIII | CATG | 3 cut(s) | 462, 551, 656 |
| NlaIV | GGNNCC | 1 cut(s) | 86 |
| NsiI | ATGCAT | 3 cut(s) | 271, 460, 654 |
| PctI | GAATGC | 3 cut(s) | 249, 460, 662 |
| PfeI | GAWTC | 1 cut(s) | 97 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 553 |
| PkrI | GCNGC | 3 cut(s) | 355, 472, 643 |
| PshBI | ATTAAT | 1 cut(s) | 579 |
| Psp6I | CCWGG | 1 cut(s) | 209 |
| PspFI | CCCAGC | 1 cut(s) | 189 |
| PspGI | CCWGG | 1 cut(s) | 209 |
| PspN4I | GGNNCC | 1 cut(s) | 86 |
| RsaI | GTAC | 2 cut(s) | 215, 435 |
| RsaNI | GTAC | 2 cut(s) | 214, 434 |
| SaqAI | TTAA | 3 cut(s) | 398, 500, 579 |
| SatI | GCNGC | 3 cut(s) | 354, 471, 642 |
| Sau3AI | GATC | 1 cut(s) | 277 |
| ScrFI | CCNGG | 1 cut(s) | 211 |
| SexAI | ACCWGGT | 1 cut(s) | 209 |
| SfaNI | GCATC | 3 cut(s) | 133, 278, 653 |
| SfcI | CTRYAG | 2 cut(s) | 273, 486 |
| SmlI | CTYRAG | 1 cut(s) | 222 |
| SmoI | CTYRAG | 1 cut(s) | 222 |
| Sse9I | AATT | 3 cut(s) | 465, 496, 580 |
| SspMI | CTAG | 1 cut(s) | 114 |
| StyD4I | CCNGG | 1 cut(s) | 209 |
| TaaI | ACNGT | 1 cut(s) | 326 |
| TaiI | ACGT | 1 cut(s) | 198 |
| TasI | AATT | 3 cut(s) | 465, 496, 580 |
| TfiI | GAWTC | 1 cut(s) | 97 |
| Tru1I | TTAA | 3 cut(s) | 398, 500, 579 |
| Tru9I | TTAA | 3 cut(s) | 398, 500, 579 |
| TscAI | CASTG | 3 cut(s) | 331, 575, 636 |
| TseI | GCWGC | 3 cut(s) | 353, 470, 641 |
| TspDTI | ATGAA | 2 cut(s) | 229, 669 |
| TspRI | CASTG | 3 cut(s) | 331, 575, 636 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 553 |
| VspI | ATTAAT | 1 cut(s) | 579 |
| XapI | RAATTY | 1 cut(s) | 496 |
| XspI | CTAG | 1 cut(s) | 114 |
| Zsp2I | ATGCAT | 3 cut(s) | 271, 460, 654 |