ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 660 - 782 | 3.3e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 110 |
| AatII | GACGTC | 1 cut(s) | 2074 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 75 |
| AccIII | TCCGGA | 1 cut(s) | 1443 |
| AciI | CCGC | 7 cut(s) | 416, 605, 782, 790, 899, 1651, 2163 |
| AclI | AACGTT | 1 cut(s) | 485 |
| AclWI | GGATC | 6 cut(s) | 42, 51, 281, 459, 495, 1526 |
| AcsI | RAATTY | 6 cut(s) | 1021, 1080, 1314, 1383, 1510, 2149 |
| AcuI | CTGAAG | 4 cut(s) | 1698, 2064, 2127, 2306 |
| AcyI | GRCGYC | 1 cut(s) | 2071 |
| AdeI | CACNNNGTG | 2 cut(s) | 75, 304 |
| AfaI | GTAC | 7 cut(s) | 61, 239, 328, 338, 903, 1366, 1705 |
| AfeI | AGCGCT | 1 cut(s) | 2005 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 75, 1571, 1650, 1961 |
| AflII | CTTAAG | 1 cut(s) | 932 |
| AgeI | ACCGGT | 1 cut(s) | 1831 |
| AjiI | CACGTC | 1 cut(s) | 982 |
| AjnI | CCWGG | 6 cut(s) | 99, 826, 975, 1211, 1543, 1686 |
| AleI | CACNNNNGTG | 1 cut(s) | 732 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2016, 2048 |
| Alw21I | GWGCWC | 2 cut(s) | 799, 2328 |
| Alw26I | GTCTC | 3 cut(s) | 522, 701, 828 |
| Alw44I | GTGCAC | 1 cut(s) | 2324 |
| AlwI | GGATC | 6 cut(s) | 42, 51, 281, 459, 495, 1526 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 833 |
| Ama87I | CYCGRG | 1 cut(s) | 1006 |
| Aor13HI | TCCGGA | 1 cut(s) | 1443 |
| Aor51HI | AGCGCT | 1 cut(s) | 2005 |
| ApaLI | GTGCAC | 1 cut(s) | 2324 |
| ApeKI | GCWGC | 5 cut(s) | 493, 1791, 2345, 2399, 2408 |
| ApoI | RAATTY | 6 cut(s) | 1021, 1080, 1314, 1383, 1510, 2149 |
| AsiGI | ACCGGT | 1 cut(s) | 1831 |
| AspLEI | GCGC | 2 cut(s) | 99, 2006 |
| AspS9I | GGNCC | 3 cut(s) | 830, 1549, 1829 |
| AsuHPI | GGTGA | 4 cut(s) | 152, 719, 1514, 1682 |
| AsuNHI | GCTAGC | 1 cut(s) | 206 |
| AvaI | CYCGRG | 1 cut(s) | 1006 |
| AvaII | GGWCC | 3 cut(s) | 830, 1549, 1829 |
| BaeGI | GKGCMC | 1 cut(s) | 2328 |
| BanII | GRGCYC | 2 cut(s) | 1939, 2284 |
| BauI | CACGAG | 1 cut(s) | 299 |
| BbsI | GAAGAC | 1 cut(s) | 1214 |
| Bbv12I | GWGCWC | 2 cut(s) | 799, 2328 |
| BbvI | GCAGC | 5 cut(s) | 505, 1803, 2332, 2386, 2420 |
| BccI | CCATC | 6 cut(s) | 442, 558, 1499, 1576, 1979, 2182 |
| BciT130I | CCWGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| BciVI | GTATCC | 2 cut(s) | 822, 865 |
| BcoDI | GTCTC | 3 cut(s) | 522, 701, 828 |
| BfmI | CTRYAG | 1 cut(s) | 2214 |
| BfoI | RGCGCY | 1 cut(s) | 2007 |
| BfrI | CTTAAG | 1 cut(s) | 932 |
| BfuI | GTATCC | 2 cut(s) | 822, 865 |
| BglII | AGATCT | 1 cut(s) | 1896 |
| BisI | GCNGC | 5 cut(s) | 494, 1792, 2346, 2400, 2409 |
| BlsI | GCNGC | 5 cut(s) | 495, 1793, 2347, 2401, 2410 |
| BmcAI | AGTACT | 1 cut(s) | 1705 |
| Bme1390I | CCNGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| Bme18I | GGWCC | 3 cut(s) | 830, 1549, 1829 |
| BmeT110I | CYCGRG | 1 cut(s) | 1006 |
| BmgBI | CACGTC | 1 cut(s) | 982 |
| BmgT120I | GGNCC | 3 cut(s) | 830, 1549, 1829 |
| BmiI | GGNNCC | 4 cut(s) | 1442, 1550, 1551, 1830 |
| BmrFI | CCNGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| BmsI | GCATC | 4 cut(s) | 7, 592, 766, 2170 |
| BmtI | GCTAGC | 1 cut(s) | 210 |
| BpiI | GAAGAC | 1 cut(s) | 1214 |
| BpmI | CTGGAG | 2 cut(s) | 810, 2079 |
| BpuEI | CTTGAG | 1 cut(s) | 1254 |
| BsaBI | GATNNNNATC | 1 cut(s) | 285 |
| BsaHI | GRCGYC | 1 cut(s) | 2071 |
| BsaJI | CCNNGG | 6 cut(s) | 589, 702, 1005, 1535, 1544, 1644 |
| BsaWI | WCCGGW | 3 cut(s) | 1443, 1831, 2074 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 470, 500, 808, 838, 1325, 1355 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 75, 1571, 1650, 1961 |
| Bse118I | RCCGGY | 1 cut(s) | 1831 |
| Bse1I | ACTGG | 4 cut(s) | 925, 1174, 1394, 2349 |
| Bse3DI | GCAATG | 1 cut(s) | 219 |
| Bse8I | GATNNNNATC | 1 cut(s) | 285 |
| BseAI | TCCGGA | 1 cut(s) | 1443 |
| BseBI | CCWGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| BseDI | CCNNGG | 6 cut(s) | 589, 702, 1005, 1535, 1544, 1644 |
| BseGI | GGATG | 2 cut(s) | 1594, 2058 |
| BseJI | GATNNNNATC | 1 cut(s) | 285 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 75, 1571, 1650, 1961 |
| BseMI | GCAATG | 1 cut(s) | 219 |
| BseMII | CTCAG | 7 cut(s) | 96, 104, 488, 885, 1632, 1952, 2403 |
| BseNI | ACTGG | 4 cut(s) | 925, 1174, 1394, 2349 |
| BseRI | GAGGAG | 2 cut(s) | 2079, 2373 |
| BseSI | GKGCMC | 1 cut(s) | 2328 |
| BseXI | GCAGC | 5 cut(s) | 505, 1803, 2332, 2386, 2420 |
| BseYI | CCCAGC | 1 cut(s) | 1238 |
| BsgI | GTGCAG | 1 cut(s) | 100 |
| BshTI | ACCGGT | 1 cut(s) | 1831 |
| BsiHKAI | GWGCWC | 2 cut(s) | 799, 2328 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1006 |
| BsiSI | CCGG | 3 cut(s) | 1444, 1832, 2075 |
| BslFI | GGGAC | 3 cut(s) | 1146, 1535, 1842 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 75, 1571, 1650, 1961 |
| BsmAI | GTCTC | 3 cut(s) | 522, 701, 828 |
| BsmFI | GGGAC | 3 cut(s) | 1146, 1535, 1842 |
| BsmI | GAATGC | 1 cut(s) | 846 |
| BsoBI | CYCGRG | 1 cut(s) | 1006 |
| Bsp1286I | GDGCHC | 4 cut(s) | 799, 1939, 2284, 2328 |
| Bsp13I | TCCGGA | 1 cut(s) | 1443 |
| Bsp1407I | TGTACA | 1 cut(s) | 336 |
| Bsp143I | GATC | 8 cut(s) | 34, 43, 286, 451, 500, 1531, 1896, 2254 |
| Bsp19I | CCATGG | 1 cut(s) | 702 |
| BspACI | CCGC | 7 cut(s) | 416, 605, 782, 790, 899, 1651, 2163 |
| BspCNI | CTCAG | 7 cut(s) | 95, 103, 487, 886, 1631, 1951, 2404 |
| BspEI | TCCGGA | 1 cut(s) | 1443 |
| BspLI | GGNNCC | 4 cut(s) | 1442, 1550, 1551, 1830 |
| BspOI | GCTAGC | 1 cut(s) | 210 |
| BspPI | GGATC | 6 cut(s) | 42, 51, 281, 459, 495, 1526 |
| BspTI | CTTAAG | 1 cut(s) | 932 |
| BsrDI | GCAATG | 1 cut(s) | 219 |
| BsrFI | RCCGGY | 1 cut(s) | 1831 |
| BsrGI | TGTACA | 1 cut(s) | 336 |
| BsrI | ACTGG | 4 cut(s) | 925, 1174, 1394, 2349 |
| BssAI | RCCGGY | 1 cut(s) | 1831 |
| BssECI | CCNNGG | 6 cut(s) | 589, 702, 1005, 1535, 1544, 1644 |
| BssMI | GATC | 8 cut(s) | 34, 43, 286, 451, 500, 1531, 1896, 2254 |
| BssNI | GRCGYC | 1 cut(s) | 2071 |
| BssSI | CACGAG | 1 cut(s) | 299 |
| BssT1I | CCWWGG | 3 cut(s) | 589, 702, 1535 |
| Bst2BI | CACGAG | 1 cut(s) | 299 |
| Bst2UI | CCWGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| Bst4CI | ACNGT | 5 cut(s) | 112, 771, 908, 1762, 1778 |
| BstACI | GRCGYC | 1 cut(s) | 2071 |
| BstAFI | CTTAAG | 1 cut(s) | 932 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2342 |
| BstAUI | TGTACA | 1 cut(s) | 336 |
| BstC8I | GCNNGC | 5 cut(s) | 208, 1476, 1485, 1728, 1857 |
| BstDSI | CCRYGG | 1 cut(s) | 702 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1569 |
| BstF5I | GGATG | 2 cut(s) | 1594, 2058 |
| BstH2I | RGCGCY | 1 cut(s) | 2007 |
| BstHHI | GCGC | 2 cut(s) | 99, 2006 |
| BstKTI | GATC | 8 cut(s) | 37, 46, 289, 454, 503, 1534, 1899, 2257 |
| BstMAI | GTCTC | 3 cut(s) | 522, 701, 828 |
| BstMBI | GATC | 8 cut(s) | 34, 43, 286, 451, 500, 1531, 1896, 2254 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1475, 1480, 1484, 1688, 2342, 2405, 2408 |
| BstNI | CCWGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| BstNSI | RCATGY | 4 cut(s) | 278, 931, 2105, 2121 |
| BstSCI | CCNGG | 6 cut(s) | 99, 826, 975, 1211, 1543, 1686 |
| BstSFI | CTRYAG | 1 cut(s) | 2214 |
| BstSLI | GKGCMC | 1 cut(s) | 2328 |
| BstV1I | GCAGC | 5 cut(s) | 505, 1803, 2332, 2386, 2420 |
| BstV2I | GAAGAC | 1 cut(s) | 1214 |
| BstX2I | RGATCY | 4 cut(s) | 34, 43, 500, 1896 |
| BstYI | RGATCY | 4 cut(s) | 34, 43, 500, 1896 |
| BsuI | GTATCC | 2 cut(s) | 822, 865 |
| BtgI | CCRYGG | 1 cut(s) | 702 |
| BtrI | CACGTC | 1 cut(s) | 982 |
| BtsCI | GGATG | 2 cut(s) | 1594, 2058 |
| BtsIMutI | CAGTG | 3 cut(s) | 891, 1387, 2183 |
| Cac8I | GCNNGC | 5 cut(s) | 208, 1476, 1485, 1728, 1857 |
| CaiI | CAGNNNCTG | 1 cut(s) | 833 |
| CfoI | GCGC | 2 cut(s) | 99, 2006 |
| Cfr10I | RCCGGY | 1 cut(s) | 1831 |
| Cfr13I | GGNCC | 3 cut(s) | 830, 1549, 1829 |
| CseI | GACGC | 1 cut(s) | 1682 |
| Csp6I | GTAC | 7 cut(s) | 60, 238, 327, 337, 902, 1365, 1704 |
| CspAI | ACCGGT | 1 cut(s) | 1831 |
| CviQI | GTAC | 7 cut(s) | 60, 238, 327, 337, 902, 1365, 1704 |
| DpnI | GATC | 8 cut(s) | 36, 45, 288, 453, 502, 1533, 1898, 2256 |
| DpnII | GATC | 8 cut(s) | 34, 43, 286, 451, 500, 1531, 1896, 2254 |
| DraIII | CACNNNGTG | 2 cut(s) | 75, 304 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 110 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 110 |
| EciI | GGCGGA | 1 cut(s) | 797 |
| Eco130I | CCWWGG | 3 cut(s) | 589, 702, 1535 |
| Eco24I | GRGCYC | 2 cut(s) | 1939, 2284 |
| Eco32I | GATATC | 2 cut(s) | 889, 1249 |
| Eco47I | GGWCC | 3 cut(s) | 830, 1549, 1829 |
| Eco47III | AGCGCT | 1 cut(s) | 2005 |
| Eco57I | CTGAAG | 4 cut(s) | 1698, 2064, 2127, 2306 |
| Eco88I | CYCGRG | 1 cut(s) | 1006 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1569 |
| EcoO109I | RGGNCCY | 2 cut(s) | 830, 1549 |
| EcoRI | GAATTC | 1 cut(s) | 1510 |
| EcoRII | CCWGG | 6 cut(s) | 99, 826, 975, 1211, 1543, 1686 |
| EcoRV | GATATC | 2 cut(s) | 889, 1249 |
| EcoT14I | CCWWGG | 3 cut(s) | 589, 702, 1535 |
| EcoT22I | ATGCAT | 1 cut(s) | 22 |
| EcoT38I | GRGCYC | 2 cut(s) | 1939, 2284 |
| ErhI | CCWWGG | 3 cut(s) | 589, 702, 1535 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1209, 1241 |
| FaqI | GGGAC | 3 cut(s) | 1146, 1535, 1842 |
| FauI | CCCGC | 1 cut(s) | 2170 |
| Fnu4HI | GCNGC | 5 cut(s) | 494, 1792, 2346, 2400, 2409 |
| FokI | GGATG | 2 cut(s) | 1601, 2065 |
| FriOI | GRGCYC | 2 cut(s) | 1939, 2284 |
| Fsp4HI | GCNGC | 5 cut(s) | 494, 1792, 2346, 2400, 2409 |
| GlaI | GCGC | 2 cut(s) | 98, 2005 |
| GluI | GCNGC | 5 cut(s) | 494, 1792, 2346, 2400, 2409 |
| GsaI | CCCAGC | 1 cut(s) | 1242 |
| GsuI | CTGGAG | 2 cut(s) | 810, 2079 |
| HaeII | RGCGCY | 1 cut(s) | 2007 |
| HapII | CCGG | 3 cut(s) | 1444, 1832, 2075 |
| HgaI | GACGC | 1 cut(s) | 1682 |
| HhaI | GCGC | 2 cut(s) | 99, 2006 |
| Hin1I | GRCGYC | 1 cut(s) | 2071 |
| Hin6I | GCGC | 2 cut(s) | 97, 2004 |
| HinP1I | GCGC | 2 cut(s) | 97, 2004 |
| HincII | GTYRAC | 1 cut(s) | 2201 |
| HindII | GTYRAC | 1 cut(s) | 2201 |
| HindIII | AAGCTT | 2 cut(s) | 1485, 1847 |
| HinfI | GANTC | 6 cut(s) | 9, 176, 1447, 1540, 1864, 2039 |
| HpaII | CCGG | 3 cut(s) | 1444, 1832, 2075 |
| HphI | GGTGA | 4 cut(s) | 152, 719, 1514, 1682 |
| Hpy166II | GTNNAC | 7 cut(s) | 298, 675, 767, 904, 1758, 2201, 2326 |
| Hpy188III | TCNNGA | 8 cut(s) | 41, 476, 1252, 1444, 1840, 2036, 2096, 2360 |
| Hpy8I | GTNNAC | 7 cut(s) | 298, 675, 767, 904, 1758, 2201, 2326 |
| HpyAV | CCTTC | 8 cut(s) | 145, 514, 1421, 1594, 1809, 2005, 2039, 2281 |
| HpyCH4III | ACNGT | 5 cut(s) | 112, 771, 908, 1762, 1778 |
| HpyCH4IV | ACGT | 6 cut(s) | 229, 485, 981, 1367, 2071, 2197 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1475, 1480, 1484, 1688, 2342, 2405, 2408 |
| HpySE526I | ACGT | 6 cut(s) | 229, 485, 981, 1367, 2071, 2197 |
| Hsp92I | GRCGYC | 1 cut(s) | 2071 |
| HspAI | GCGC | 2 cut(s) | 97, 2004 |
| KflI | GGGWCCC | 1 cut(s) | 1549 |
| Kpn2I | TCCGGA | 1 cut(s) | 1443 |
| Kzo9I | GATC | 8 cut(s) | 34, 43, 286, 451, 500, 1531, 1896, 2254 |
| LmnI | GCTCC | 5 cut(s) | 881, 1235, 1333, 1653, 2386 |
| Lsp1109I | GCAGC | 5 cut(s) | 505, 1803, 2332, 2386, 2420 |
| LweI | GCATC | 4 cut(s) | 7, 592, 766, 2170 |
| MaeII | ACGT | 6 cut(s) | 229, 485, 981, 1367, 2071, 2197 |
| MaeIII | GTNAC | 9 cut(s) | 154, 173, 198, 267, 508, 736, 923, 1670, 1881 |
| MalI | GATC | 8 cut(s) | 36, 45, 288, 453, 502, 1533, 1898, 2256 |
| MboI | GATC | 8 cut(s) | 34, 43, 286, 451, 500, 1531, 1896, 2254 |
| MboII | GAAGA | 8 cut(s) | 29, 404, 448, 635, 672, 1210, 1219, 1906 |
| MflI | RGATCY | 4 cut(s) | 34, 43, 500, 1896 |
| MhlI | GDGCHC | 4 cut(s) | 799, 1939, 2284, 2328 |
| MlyI | GAGTC | 2 cut(s) | 170, 1456 |
| MmeI | TCCRAC | 2 cut(s) | 1327, 1350 |
| Mph1103I | ATGCAT | 1 cut(s) | 22 |
| MroI | TCCGGA | 1 cut(s) | 1443 |
| MslI | CAYNNNNRTG | 3 cut(s) | 124, 732, 762 |
| MspA1I | CMGCKG | 2 cut(s) | 792, 2411 |
| MspCI | CTTAAG | 1 cut(s) | 932 |
| MspI | CCGG | 3 cut(s) | 1444, 1832, 2075 |
| MspR9I | CCNGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| Mva1269I | GAATGC | 1 cut(s) | 846 |
| MvaI | CCWGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1475, 1480, 1484, 1688, 2342, 2405, 2408 |
| NcoI | CCATGG | 1 cut(s) | 702 |
| NdeII | GATC | 8 cut(s) | 34, 43, 286, 451, 500, 1531, 1896, 2254 |
| NheI | GCTAGC | 1 cut(s) | 206 |
| NlaIV | GGNNCC | 4 cut(s) | 1442, 1550, 1551, 1830 |
| NmuCI | GTSAC | 4 cut(s) | 173, 508, 923, 1670 |
| NsiI | ATGCAT | 1 cut(s) | 22 |
| NspI | RCATGY | 4 cut(s) | 278, 931, 2105, 2121 |
| OliI | CACNNNNGTG | 1 cut(s) | 732 |
| PctI | GAATGC | 1 cut(s) | 846 |
| PfeI | GAWTC | 4 cut(s) | 9, 1540, 1864, 2039 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 75 |
| PfoI | TCCNGGA | 2 cut(s) | 826, 975 |
| PinAI | ACCGGT | 1 cut(s) | 1831 |
| PkrI | GCNGC | 5 cut(s) | 495, 1793, 2347, 2401, 2410 |
| PleI | GAGTC | 2 cut(s) | 170, 1455 |
| PpsI | GAGTC | 2 cut(s) | 170, 1455 |
| PpuMI | RGGWCCY | 2 cut(s) | 830, 1549 |
| Psp1406I | AACGTT | 1 cut(s) | 485 |
| Psp5II | RGGWCCY | 2 cut(s) | 830, 1549 |
| Psp6I | CCWGG | 6 cut(s) | 99, 826, 975, 1211, 1543, 1686 |
| PspFI | CCCAGC | 1 cut(s) | 1238 |
| PspGI | CCWGG | 6 cut(s) | 99, 826, 975, 1211, 1543, 1686 |
| PspN4I | GGNNCC | 4 cut(s) | 1442, 1550, 1551, 1830 |
| PspPI | GGNCC | 3 cut(s) | 830, 1549, 1829 |
| PspPPI | RGGWCCY | 2 cut(s) | 830, 1549 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 230, 262 |
| PstNI | CAGNNNCTG | 1 cut(s) | 833 |
| PsuI | RGATCY | 4 cut(s) | 34, 43, 500, 1896 |
| PvuII | CAGCTG | 1 cut(s) | 2411 |
| RsaI | GTAC | 7 cut(s) | 61, 239, 328, 338, 903, 1366, 1705 |
| RsaNI | GTAC | 7 cut(s) | 60, 238, 327, 337, 902, 1365, 1704 |
| RseI | CAYNNNNRTG | 3 cut(s) | 124, 732, 762 |
| SatI | GCNGC | 5 cut(s) | 494, 1792, 2346, 2400, 2409 |
| Sau3AI | GATC | 8 cut(s) | 34, 43, 286, 451, 500, 1531, 1896, 2254 |
| Sau96I | GGNCC | 3 cut(s) | 830, 1549, 1829 |
| ScaI | AGTACT | 1 cut(s) | 1705 |
| SchI | GAGTC | 2 cut(s) | 170, 1456 |
| ScrFI | CCNGG | 6 cut(s) | 101, 828, 977, 1213, 1545, 1688 |
| SduI | GDGCHC | 4 cut(s) | 799, 1939, 2284, 2328 |
| SfaNI | GCATC | 4 cut(s) | 7, 592, 766, 2170 |
| SfcI | CTRYAG | 1 cut(s) | 2214 |
| SinI | GGWCC | 3 cut(s) | 830, 1549, 1829 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 124, 732, 762 |
| SmlI | CTYRAG | 2 cut(s) | 932, 1269 |
| SmoI | CTYRAG | 2 cut(s) | 932, 1269 |
| SsiI | CCGC | 7 cut(s) | 416, 605, 782, 790, 899, 1651, 2163 |
| StyD4I | CCNGG | 6 cut(s) | 99, 826, 975, 1211, 1543, 1686 |
| StyI | CCWWGG | 3 cut(s) | 589, 702, 1535 |
| TaaI | ACNGT | 5 cut(s) | 112, 771, 908, 1762, 1778 |
| TaiI | ACGT | 6 cut(s) | 232, 488, 984, 1370, 2074, 2200 |
| TaqI | TCGA | 1 cut(s) | 1085 |
| TatI | WGTACW | 2 cut(s) | 336, 1703 |
| TfiI | GAWTC | 4 cut(s) | 9, 1540, 1864, 2039 |
| TscAI | CASTG | 3 cut(s) | 898, 1394, 2190 |
| TseFI | GTSAC | 4 cut(s) | 173, 508, 923, 1670 |
| TseI | GCWGC | 5 cut(s) | 493, 1791, 2345, 2399, 2408 |
| Tsp45I | GTSAC | 4 cut(s) | 173, 508, 923, 1670 |
| TspDTI | ATGAA | 3 cut(s) | 764, 765, 1653 |
| TspGWI | ACGGA | 2 cut(s) | 852, 1510 |
| TspRI | CASTG | 3 cut(s) | 898, 1394, 2190 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 75 |
| Vha464I | CTTAAG | 1 cut(s) | 932 |
| VneI | GTGCAC | 1 cut(s) | 2324 |
| VpaK11BI | GGWCC | 3 cut(s) | 830, 1549, 1829 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1569 |
| XapI | RAATTY | 6 cut(s) | 1021, 1080, 1314, 1383, 1510, 2149 |
| XceI | RCATGY | 4 cut(s) | 278, 931, 2105, 2121 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 738 |
| ZraI | GACGTC | 1 cut(s) | 2072 |
| ZrmI | AGTACT | 1 cut(s) | 1705 |
| Zsp2I | ATGCAT | 1 cut(s) | 22 |