Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 286 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 256 |
| AccIII | TCCGGA | 1 cut(s) | 46 |
| AciI | CCGC | 2 cut(s) | 260, 275 |
| AclWI | GGATC | 1 cut(s) | 390 |
| AfaI | GTAC | 1 cut(s) | 271 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 32, 256, 480 |
| AluBI | AGCT | 3 cut(s) | 77, 116, 317 |
| AluI | AGCT | 3 cut(s) | 77, 116, 317 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| AlwI | GGATC | 1 cut(s) | 390 |
| Aor13HI | TCCGGA | 1 cut(s) | 46 |
| AoxI | GGCC | 4 cut(s) | 23, 341, 360, 387 |
| ApeKI | GCWGC | 4 cut(s) | 77, 332, 428, 464 |
| AspS9I | GGNCC | 2 cut(s) | 110, 342 |
| AsuHPI | GGTGA | 1 cut(s) | 377 |
| AvaII | GGWCC | 1 cut(s) | 110 |
| BauI | CACGAG | 1 cut(s) | 101 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BbvI | GCAGC | 4 cut(s) | 64, 319, 415, 476 |
| BccI | CCATC | 3 cut(s) | 258, 296, 301 |
| BfaI | CTAG | 3 cut(s) | 83, 188, 299 |
| BisI | GCNGC | 6 cut(s) | 78, 261, 276, 333, 429, 465 |
| BlsI | GCNGC | 6 cut(s) | 79, 262, 277, 334, 430, 466 |
| Bme18I | GGWCC | 1 cut(s) | 110 |
| BmgT120I | GGNCC | 2 cut(s) | 110, 342 |
| BmiI | GGNNCC | 1 cut(s) | 344 |
| BmsI | GCATC | 1 cut(s) | 121 |
| BpuEI | CTTGAG | 2 cut(s) | 297, 335 |
| BsaWI | WCCGGW | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 89, 119 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 32, 256, 480 |
| Bse118I | RCCGGY | 1 cut(s) | 362 |
| Bse1I | ACTGG | 2 cut(s) | 126, 241 |
| Bse3DI | GCAATG | 2 cut(s) | 158, 438 |
| BseAI | TCCGGA | 1 cut(s) | 46 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 32, 256, 480 |
| BseMI | GCAATG | 2 cut(s) | 158, 438 |
| BseNI | ACTGG | 2 cut(s) | 126, 241 |
| BseRI | GAGGAG | 1 cut(s) | 433 |
| BseXI | GCAGC | 4 cut(s) | 64, 319, 415, 476 |
| BsgI | GTGCAG | 1 cut(s) | 63 |
| BshFI | GGCC | 4 cut(s) | 25, 343, 362, 389 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| BsiSI | CCGG | 2 cut(s) | 47, 363 |
| BslFI | GGGAC | 1 cut(s) | 274 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 32, 256, 480 |
| BsmFI | GGGAC | 1 cut(s) | 274 |
| BsnI | GGCC | 4 cut(s) | 25, 343, 362, 389 |
| Bsp1286I | GDGCHC | 1 cut(s) | 102 |
| Bsp13I | TCCGGA | 1 cut(s) | 46 |
| Bsp143I | GATC | 1 cut(s) | 382 |
| BspACI | CCGC | 2 cut(s) | 260, 275 |
| BspANI | GGCC | 4 cut(s) | 25, 343, 362, 389 |
| BspEI | TCCGGA | 1 cut(s) | 46 |
| BspLI | GGNNCC | 1 cut(s) | 344 |
| BspPI | GGATC | 1 cut(s) | 390 |
| BsrDI | GCAATG | 2 cut(s) | 158, 438 |
| BsrFI | RCCGGY | 1 cut(s) | 362 |
| BsrI | ACTGG | 2 cut(s) | 126, 241 |
| BssAI | RCCGGY | 1 cut(s) | 362 |
| BssMI | GATC | 1 cut(s) | 382 |
| BssSI | CACGAG | 1 cut(s) | 101 |
| Bst2BI | CACGAG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 1 cut(s) | 149 |
| BstC8I | GCNNGC | 4 cut(s) | 38, 54, 70, 226 |
| BstDEI | CTNAG | 1 cut(s) | 64 |
| BstEII | GGTNACC | 1 cut(s) | 365 |
| BstKTI | GATC | 1 cut(s) | 385 |
| BstMBI | GATC | 1 cut(s) | 382 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 74, 221, 395 |
| BstNSI | RCATGY | 3 cut(s) | 56, 72, 228 |
| BstPI | GGTNACC | 1 cut(s) | 365 |
| BstV1I | GCAGC | 4 cut(s) | 64, 319, 415, 476 |
| BstX2I | RGATCY | 1 cut(s) | 382 |
| BstYI | RGATCY | 1 cut(s) | 382 |
| BsuRI | GGCC | 4 cut(s) | 25, 343, 362, 389 |
| BtsI | GCAGTG | 1 cut(s) | 168 |
| BtsIMutI | CAGTG | 3 cut(s) | 145, 168, 248 |
| Cac8I | GCNNGC | 4 cut(s) | 38, 54, 70, 226 |
| Cfr10I | RCCGGY | 1 cut(s) | 362 |
| Cfr13I | GGNCC | 2 cut(s) | 110, 342 |
| Csp6I | GTAC | 1 cut(s) | 270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 464, 499 |
| CviAII | CATG | 5 cut(s) | 53, 69, 164, 225, 286 |
| CviQI | GTAC | 1 cut(s) | 270 |
| DdeI | CTNAG | 1 cut(s) | 64 |
| DpnI | GATC | 1 cut(s) | 384 |
| DpnII | GATC | 1 cut(s) | 382 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 286 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 286 |
| Eco47I | GGWCC | 1 cut(s) | 110 |
| Eco91I | GGTNACC | 1 cut(s) | 365 |
| EcoO65I | GGTNACC | 1 cut(s) | 365 |
| FaeI | CATG | 5 cut(s) | 56, 72, 167, 228, 289 |
| FaqI | GGGAC | 1 cut(s) | 274 |
| FatI | CATG | 5 cut(s) | 52, 68, 163, 224, 285 |
| Fnu4HI | GCNGC | 6 cut(s) | 78, 261, 276, 333, 429, 465 |
| Fsp4HI | GCNGC | 6 cut(s) | 78, 261, 276, 333, 429, 465 |
| FspBI | CTAG | 3 cut(s) | 83, 188, 299 |
| GluI | GCNGC | 6 cut(s) | 78, 261, 276, 333, 429, 465 |
| HaeIII | GGCC | 4 cut(s) | 25, 343, 362, 389 |
| HapII | CCGG | 2 cut(s) | 47, 363 |
| Hin1II | CATG | 5 cut(s) | 56, 72, 167, 228, 289 |
| HincII | GTYRAC | 1 cut(s) | 152 |
| HindII | GTYRAC | 1 cut(s) | 152 |
| HpaII | CCGG | 2 cut(s) | 47, 363 |
| HphI | GGTGA | 1 cut(s) | 377 |
| Hpy166II | GTNNAC | 2 cut(s) | 145, 152 |
| Hpy188I | TCNGA | 1 cut(s) | 406 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 299 |
| Hpy8I | GTNNAC | 2 cut(s) | 145, 152 |
| Hpy99I | CGWCG | 2 cut(s) | 268, 283 |
| HpyAV | CCTTC | 3 cut(s) | 51, 356, 400 |
| HpyCH4III | ACNGT | 1 cut(s) | 149 |
| HpyCH4V | TGCA | 5 cut(s) | 72, 80, 163, 335, 431 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 74, 221, 395 |
| HpyF3I | CTNAG | 1 cut(s) | 64 |
| Hsp92II | CATG | 5 cut(s) | 56, 72, 167, 228, 289 |
| Kpn2I | TCCGGA | 1 cut(s) | 46 |
| Kzo9I | GATC | 1 cut(s) | 382 |
| LmnI | GCTCC | 2 cut(s) | 49, 97 |
| LpnPI | CCDG | 9 cut(s) | 60, 107, 126, 178, 242, 254, 371, 376, 477 |
| Lsp1109I | GCAGC | 4 cut(s) | 64, 319, 415, 476 |
| LweI | GCATC | 1 cut(s) | 121 |
| MaeI | CTAG | 3 cut(s) | 83, 188, 299 |
| MaeIII | GTNAC | 1 cut(s) | 365 |
| MalI | GATC | 1 cut(s) | 384 |
| MboI | GATC | 1 cut(s) | 382 |
| MflI | RGATCY | 1 cut(s) | 382 |
| MhlI | GDGCHC | 1 cut(s) | 102 |
| MluCI | AATT | 1 cut(s) | 477 |
| MmeI | TCCRAC | 1 cut(s) | 395 |
| MnlI | CCTC | 7 cut(s) | 8, 87, 133, 352, 411, 414, 491 |
| MroI | TCCGGA | 1 cut(s) | 46 |
| MspA1I | CMGCKG | 1 cut(s) | 275 |
| MspI | CCGG | 2 cut(s) | 47, 363 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 74, 221, 395 |
| NdeII | GATC | 1 cut(s) | 382 |
| NlaIII | CATG | 5 cut(s) | 56, 72, 167, 228, 289 |
| NlaIV | GGNNCC | 1 cut(s) | 344 |
| NmuCI | GTSAC | 1 cut(s) | 365 |
| NspI | RCATGY | 3 cut(s) | 56, 72, 228 |
| PaeI | GCATGC | 3 cut(s) | 56, 72, 228 |
| PflFI | GACNNNGTC | 1 cut(s) | 286 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 256 |
| PkrI | GCNGC | 6 cut(s) | 79, 262, 277, 334, 430, 466 |
| PspEI | GGTNACC | 1 cut(s) | 365 |
| PspN4I | GGNNCC | 1 cut(s) | 344 |
| PspPI | GGNCC | 2 cut(s) | 110, 342 |
| PsuI | RGATCY | 1 cut(s) | 382 |
| PsyI | GACNNNGTC | 1 cut(s) | 286 |
| RsaI | GTAC | 1 cut(s) | 271 |
| RsaNI | GTAC | 1 cut(s) | 270 |
| SatI | GCNGC | 6 cut(s) | 78, 261, 276, 333, 429, 465 |
| Sau3AI | GATC | 1 cut(s) | 382 |
| Sau96I | GGNCC | 2 cut(s) | 110, 342 |
| SduI | GDGCHC | 1 cut(s) | 102 |
| SetI | ASST | 7 cut(s) | 19, 79, 118, 144, 319, 425, 442 |
| SfaNI | GCATC | 1 cut(s) | 121 |
| SinI | GGWCC | 1 cut(s) | 110 |
| SmlI | CTYRAG | 2 cut(s) | 312, 350 |
| SmoI | CTYRAG | 2 cut(s) | 312, 350 |
| SphI | GCATGC | 3 cut(s) | 56, 72, 228 |
| Sse9I | AATT | 1 cut(s) | 477 |
| SsiI | CCGC | 2 cut(s) | 260, 275 |
| SspMI | CTAG | 3 cut(s) | 83, 188, 299 |
| TaaI | ACNGT | 1 cut(s) | 149 |
| TaqI | TCGA | 1 cut(s) | 496 |
| TaqII | GACCGA | 1 cut(s) | 384 |
| TasI | AATT | 1 cut(s) | 477 |
| TatI | WGTACW | 1 cut(s) | 269 |
| TauI | GCSGC | 2 cut(s) | 263, 278 |
| TscAI | CASTG | 3 cut(s) | 152, 175, 248 |
| TseFI | GTSAC | 1 cut(s) | 365 |
| TseI | GCWGC | 4 cut(s) | 77, 332, 428, 464 |
| Tsp45I | GTSAC | 1 cut(s) | 365 |
| TspDTI | ATGAA | 1 cut(s) | 147 |
| TspRI | CASTG | 3 cut(s) | 152, 175, 248 |
| Tth111I | GACNNNGTC | 1 cut(s) | 286 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 256 |
| VpaK11BI | GGWCC | 1 cut(s) | 110 |
| XbaI | TCTAGA | 1 cut(s) | 298 |
| XceI | RCATGY | 3 cut(s) | 56, 72, 228 |
| XspI | CTAG | 3 cut(s) | 83, 188, 299 |