Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 82 - 321 | 1.2e-16 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 670 |
| Acc36I | ACCTGC | 1 cut(s) | 670 |
| AccII | CGCG | 1 cut(s) | 340 |
| AciI | CCGC | 1 cut(s) | 100 |
| AclWI | GGATC | 2 cut(s) | 308, 539 |
| AcsI | RAATTY | 2 cut(s) | 623, 670 |
| AfaI | GTAC | 3 cut(s) | 259, 307, 524 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 155, 572, 929, 930 |
| AgsI | TTSAA | 8 cut(s) | 23, 214, 255, 326, 376, 407, 478, 811 |
| AleI | CACNNNNGTG | 1 cut(s) | 656 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 931, 963 |
| AluBI | AGCT | 3 cut(s) | 139, 419, 752 |
| AluI | AGCT | 3 cut(s) | 139, 419, 752 |
| Alw26I | GTCTC | 2 cut(s) | 350, 426 |
| AlwI | GGATC | 2 cut(s) | 308, 539 |
| AoxI | GGCC | 2 cut(s) | 200, 715 |
| ApeKI | GCWGC | 4 cut(s) | 133, 136, 581, 894 |
| ApoI | RAATTY | 2 cut(s) | 623, 670 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 393 |
| AspS9I | GGNCC | 3 cut(s) | 102, 158, 715 |
| AsuHPI | GGTGA | 4 cut(s) | 211, 241, 305, 776 |
| AsuII | TTCGAA | 1 cut(s) | 668 |
| AvaII | GGWCC | 2 cut(s) | 102, 158 |
| BanII | GRGCYC | 1 cut(s) | 988 |
| BbsI | GAAGAC | 1 cut(s) | 707 |
| BbvI | GCAGC | 4 cut(s) | 145, 148, 593, 881 |
| BccI | CCATC | 4 cut(s) | 158, 832, 854, 884 |
| BceAI | ACGGC | 1 cut(s) | 702 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 658, 692 |
| BciVI | GTATCC | 1 cut(s) | 189 |
| BclI | TGATCA | 1 cut(s) | 873 |
| BcoDI | GTCTC | 2 cut(s) | 350, 426 |
| BfaI | CTAG | 4 cut(s) | 6, 311, 483, 578 |
| BfmI | CTRYAG | 1 cut(s) | 793 |
| BfuAI | ACCTGC | 1 cut(s) | 670 |
| BfuI | GTATCC | 1 cut(s) | 189 |
| BisI | GCNGC | 4 cut(s) | 134, 137, 582, 895 |
| BlsI | GCNGC | 4 cut(s) | 135, 138, 583, 896 |
| Bme18I | GGWCC | 2 cut(s) | 102, 158 |
| BmgT120I | GGNCC | 3 cut(s) | 102, 158, 715 |
| BmiI | GGNNCC | 1 cut(s) | 160 |
| BmrI | ACTGGG | 1 cut(s) | 991 |
| BmsI | GCATC | 1 cut(s) | 634 |
| BmuI | ACTGGG | 1 cut(s) | 991 |
| BpiI | GAAGAC | 1 cut(s) | 707 |
| BpmI | CTGGAG | 1 cut(s) | 774 |
| Bpu14I | TTCGAA | 1 cut(s) | 668 |
| BpuEI | CTTGAG | 1 cut(s) | 897 |
| BsaJI | CCNNGG | 1 cut(s) | 590 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 155, 572, 929, 930 |
| Bse1I | ACTGG | 4 cut(s) | 203, 566, 639, 986 |
| BseDI | CCNNGG | 1 cut(s) | 590 |
| BseGI | GGATG | 5 cut(s) | 391, 714, 865, 892, 964 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 155, 572, 929, 930 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| BseNI | ACTGG | 4 cut(s) | 203, 566, 639, 986 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseXI | GCAGC | 4 cut(s) | 145, 148, 593, 881 |
| BseYI | CCCAGC | 1 cut(s) | 828 |
| BsgI | GTGCAG | 1 cut(s) | 477 |
| Bsh1236I | CGCG | 1 cut(s) | 340 |
| BshFI | GGCC | 2 cut(s) | 202, 717 |
| BsiWI | CGTACG | 1 cut(s) | 305 |
| BslFI | GGGAC | 2 cut(s) | 144, 229 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 155, 572, 929, 930 |
| BsmAI | GTCTC | 2 cut(s) | 350, 426 |
| BsmFI | GGGAC | 2 cut(s) | 144, 229 |
| BsmI | GAATGC | 1 cut(s) | 817 |
| BsnI | GGCC | 2 cut(s) | 202, 717 |
| Bsp119I | TTCGAA | 1 cut(s) | 668 |
| Bsp1286I | GDGCHC | 1 cut(s) | 988 |
| Bsp143I | GATC | 7 cut(s) | 10, 231, 301, 313, 544, 648, 873 |
| BspACI | CCGC | 1 cut(s) | 100 |
| BspANI | GGCC | 2 cut(s) | 202, 717 |
| BspCNI | CTCAG | 1 cut(s) | 346 |
| BspFNI | CGCG | 1 cut(s) | 340 |
| BspLI | GGNNCC | 1 cut(s) | 160 |
| BspMI | ACCTGC | 1 cut(s) | 670 |
| BspPI | GGATC | 2 cut(s) | 308, 539 |
| BspT104I | TTCGAA | 1 cut(s) | 668 |
| BsrI | ACTGG | 4 cut(s) | 203, 566, 639, 986 |
| BssECI | CCNNGG | 1 cut(s) | 590 |
| BssMI | GATC | 7 cut(s) | 10, 231, 301, 313, 544, 648, 873 |
| BssT1I | CCWWGG | 1 cut(s) | 590 |
| Bst4CI | ACNGT | 4 cut(s) | 251, 274, 530, 655 |
| BstBI | TTCGAA | 1 cut(s) | 668 |
| BstDEI | CTNAG | 3 cut(s) | 204, 354, 428 |
| BstF5I | GGATG | 5 cut(s) | 391, 714, 865, 892, 964 |
| BstFNI | CGCG | 1 cut(s) | 340 |
| BstKTI | GATC | 7 cut(s) | 13, 234, 304, 316, 547, 651, 876 |
| BstMAI | GTCTC | 2 cut(s) | 350, 426 |
| BstMBI | GATC | 7 cut(s) | 10, 231, 301, 313, 544, 648, 873 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 644, 723 |
| BstSFI | CTRYAG | 1 cut(s) | 793 |
| BstUI | CGCG | 1 cut(s) | 340 |
| BstV1I | GCAGC | 4 cut(s) | 145, 148, 593, 881 |
| BstV2I | GAAGAC | 1 cut(s) | 707 |
| BstX2I | RGATCY | 1 cut(s) | 313 |
| BstYI | RGATCY | 1 cut(s) | 313 |
| BsuI | GTATCC | 1 cut(s) | 189 |
| BsuRI | GGCC | 2 cut(s) | 202, 717 |
| BtsCI | GGATG | 5 cut(s) | 391, 714, 865, 892, 964 |
| BtsIMutI | CAGTG | 4 cut(s) | 526, 573, 646, 979 |
| BveI | ACCTGC | 1 cut(s) | 670 |
| Cfr13I | GGNCC | 3 cut(s) | 102, 158, 715 |
| CseI | GACGC | 1 cut(s) | 770 |
| Csp6I | GTAC | 3 cut(s) | 258, 306, 523 |
| CviAII | CATG | 5 cut(s) | 96, 239, 261, 499, 935 |
| CviQI | GTAC | 3 cut(s) | 258, 306, 523 |
| DdeI | CTNAG | 3 cut(s) | 204, 354, 428 |
| DpnI | GATC | 7 cut(s) | 12, 233, 303, 315, 546, 650, 875 |
| DpnII | GATC | 7 cut(s) | 10, 231, 301, 313, 544, 648, 873 |
| Eco130I | CCWWGG | 1 cut(s) | 590 |
| Eco24I | GRGCYC | 1 cut(s) | 988 |
| Eco47I | GGWCC | 2 cut(s) | 102, 158 |
| EcoO109I | RGGNCCY | 1 cut(s) | 158 |
| EcoRI | GAATTC | 1 cut(s) | 670 |
| EcoT14I | CCWWGG | 1 cut(s) | 590 |
| EcoT38I | GRGCYC | 1 cut(s) | 988 |
| ErhI | CCWWGG | 1 cut(s) | 590 |
| FaeI | CATG | 5 cut(s) | 99, 242, 264, 502, 938 |
| FaqI | GGGAC | 2 cut(s) | 144, 229 |
| FatI | CATG | 5 cut(s) | 95, 238, 260, 498, 934 |
| FbaI | TGATCA | 1 cut(s) | 873 |
| Fnu4HI | GCNGC | 4 cut(s) | 134, 137, 582, 895 |
| FokI | GGATG | 5 cut(s) | 398, 721, 872, 899, 951 |
| FriOI | GRGCYC | 1 cut(s) | 988 |
| Fsp4HI | GCNGC | 4 cut(s) | 134, 137, 582, 895 |
| FspBI | CTAG | 4 cut(s) | 6, 311, 483, 578 |
| GluI | GCNGC | 4 cut(s) | 134, 137, 582, 895 |
| GsaI | CCCAGC | 1 cut(s) | 832 |
| GsuI | CTGGAG | 1 cut(s) | 774 |
| HaeIII | GGCC | 2 cut(s) | 202, 717 |
| HgaI | GACGC | 1 cut(s) | 770 |
| Hin1II | CATG | 5 cut(s) | 99, 242, 264, 502, 938 |
| HindIII | AAGCTT | 1 cut(s) | 417 |
| HinfI | GANTC | 6 cut(s) | 75, 287, 665, 703, 746, 881 |
| HphI | GGTGA | 4 cut(s) | 211, 241, 305, 776 |
| Hpy166II | GTNNAC | 1 cut(s) | 722 |
| Hpy188I | TCNGA | 3 cut(s) | 155, 708, 886 |
| Hpy188III | TCNNGA | 3 cut(s) | 72, 182, 914 |
| Hpy8I | GTNNAC | 1 cut(s) | 722 |
| HpyAV | CCTTC | 3 cut(s) | 484, 566, 915 |
| HpyCH4III | ACNGT | 4 cut(s) | 251, 274, 530, 655 |
| HpyCH4V | TGCA | 4 cut(s) | 494, 679, 815, 996 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 644, 723 |
| HpyF3I | CTNAG | 3 cut(s) | 204, 354, 428 |
| Hsp92II | CATG | 5 cut(s) | 99, 242, 264, 502, 938 |
| Ksp22I | TGATCA | 1 cut(s) | 873 |
| Kzo9I | GATC | 7 cut(s) | 10, 231, 301, 313, 544, 648, 873 |
| LmnI | GCTCC | 1 cut(s) | 144 |
| Lsp1109I | GCAGC | 4 cut(s) | 145, 148, 593, 881 |
| LweI | GCATC | 1 cut(s) | 634 |
| MaeI | CTAG | 4 cut(s) | 6, 311, 483, 578 |
| MaeIII | GTNAC | 2 cut(s) | 268, 782 |
| MalI | GATC | 7 cut(s) | 12, 233, 303, 315, 546, 650, 875 |
| MboI | GATC | 7 cut(s) | 10, 231, 301, 313, 544, 648, 873 |
| MboII | GAAGA | 3 cut(s) | 401, 611, 712 |
| MfeI | CAATTG | 1 cut(s) | 816 |
| MflI | RGATCY | 1 cut(s) | 313 |
| MhlI | GDGCHC | 1 cut(s) | 988 |
| MluCI | AATT | 8 cut(s) | 23, 297, 407, 532, 623, 670, 816, 927 |
| MlyI | GAGTC | 1 cut(s) | 697 |
| MmeI | TCCRAC | 1 cut(s) | 19 |
| MroXI | GAANNNNTTC | 1 cut(s) | 393 |
| MseI | TTAA | 5 cut(s) | 51, 560, 771, 789, 804 |
| MslI | CAYNNNNRTG | 2 cut(s) | 554, 656 |
| MspA1I | CMGCKG | 1 cut(s) | 752 |
| MunI | CAATTG | 1 cut(s) | 816 |
| Mva1269I | GAATGC | 1 cut(s) | 817 |
| MvnI | CGCG | 1 cut(s) | 340 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 644, 723 |
| NdeII | GATC | 7 cut(s) | 10, 231, 301, 313, 544, 648, 873 |
| NlaIII | CATG | 5 cut(s) | 99, 242, 264, 502, 938 |
| NlaIV | GGNNCC | 1 cut(s) | 160 |
| NmuCI | GTSAC | 1 cut(s) | 782 |
| NspV | TTCGAA | 1 cut(s) | 668 |
| OliI | CACNNNNGTG | 1 cut(s) | 656 |
| PaqCI | CACCTGC | 1 cut(s) | 670 |
| PctI | GAATGC | 1 cut(s) | 817 |
| PdmI | GAANNNNTTC | 1 cut(s) | 393 |
| PfeI | GAWTC | 5 cut(s) | 75, 287, 665, 746, 881 |
| Pfl23II | CGTACG | 1 cut(s) | 305 |
| PkrI | GCNGC | 4 cut(s) | 135, 138, 583, 896 |
| PleI | GAGTC | 1 cut(s) | 697 |
| PpsI | GAGTC | 1 cut(s) | 697 |
| PpuMI | RGGWCCY | 1 cut(s) | 158 |
| Psp5II | RGGWCCY | 1 cut(s) | 158 |
| PspFI | CCCAGC | 1 cut(s) | 828 |
| PspLI | CGTACG | 1 cut(s) | 305 |
| PspN4I | GGNNCC | 1 cut(s) | 160 |
| PspPI | GGNCC | 3 cut(s) | 102, 158, 715 |
| PspPPI | RGGWCCY | 1 cut(s) | 158 |
| PsuI | RGATCY | 1 cut(s) | 313 |
| PvuII | CAGCTG | 1 cut(s) | 752 |
| RsaI | GTAC | 3 cut(s) | 259, 307, 524 |
| RsaNI | GTAC | 3 cut(s) | 258, 306, 523 |
| RseI | CAYNNNNRTG | 2 cut(s) | 554, 656 |
| SaqAI | TTAA | 5 cut(s) | 51, 560, 771, 789, 804 |
| SatI | GCNGC | 4 cut(s) | 134, 137, 582, 895 |
| Sau3AI | GATC | 7 cut(s) | 10, 231, 301, 313, 544, 648, 873 |
| Sau96I | GGNCC | 3 cut(s) | 102, 158, 715 |
| SchI | GAGTC | 1 cut(s) | 697 |
| SduI | GDGCHC | 1 cut(s) | 988 |
| SetI | ASST | 9 cut(s) | 141, 160, 219, 421, 541, 577, 684, 754, 789 |
| SfaNI | GCATC | 1 cut(s) | 634 |
| SfcI | CTRYAG | 1 cut(s) | 793 |
| SfuI | TTCGAA | 1 cut(s) | 668 |
| SinI | GGWCC | 2 cut(s) | 102, 158 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 554, 656 |
| SmlI | CTYRAG | 1 cut(s) | 912 |
| SmoI | CTYRAG | 1 cut(s) | 912 |
| Sse9I | AATT | 8 cut(s) | 23, 297, 407, 532, 623, 670, 816, 927 |
| SsiI | CCGC | 1 cut(s) | 100 |
| SspI | AATATT | 1 cut(s) | 870 |
| SspMI | CTAG | 4 cut(s) | 6, 311, 483, 578 |
| StyI | CCWWGG | 1 cut(s) | 590 |
| TaaI | ACNGT | 4 cut(s) | 251, 274, 530, 655 |
| TaqI | TCGA | 4 cut(s) | 73, 597, 668, 865 |
| TaqII | GACCGA | 1 cut(s) | 81 |
| TasI | AATT | 8 cut(s) | 23, 297, 407, 532, 623, 670, 816, 927 |
| TatI | WGTACW | 1 cut(s) | 257 |
| TfiI | GAWTC | 5 cut(s) | 75, 287, 665, 746, 881 |
| Tru1I | TTAA | 5 cut(s) | 51, 560, 771, 789, 804 |
| Tru9I | TTAA | 5 cut(s) | 51, 560, 771, 789, 804 |
| TscAI | CASTG | 4 cut(s) | 533, 573, 646, 986 |
| TseFI | GTSAC | 1 cut(s) | 782 |
| TseI | GCWGC | 4 cut(s) | 133, 136, 581, 894 |
| Tsp45I | GTSAC | 1 cut(s) | 782 |
| TspDTI | ATGAA | 1 cut(s) | 402 |
| TspGWI | ACGGA | 1 cut(s) | 68 |
| TspRI | CASTG | 4 cut(s) | 533, 573, 646, 986 |
| VpaK11BI | GGWCC | 2 cut(s) | 102, 158 |
| XapI | RAATTY | 2 cut(s) | 623, 670 |
| XmnI | GAANNNNTTC | 1 cut(s) | 393 |
| XspI | CTAG | 4 cut(s) | 6, 311, 483, 578 |