Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 451 |
| AccI | GTMKAC | 1 cut(s) | 138 |
| AccII | CGCG | 1 cut(s) | 462 |
| AciI | CCGC | 4 cut(s) | 200, 245, 403, 473 |
| AclWI | GGATC | 2 cut(s) | 494, 507 |
| AcoI | YGGCCR | 2 cut(s) | 88, 246 |
| AcsI | RAATTY | 1 cut(s) | 38 |
| AfaI | GTAC | 2 cut(s) | 209, 215 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 349, 418, 451 |
| AflIII | ACRYGT | 1 cut(s) | 210 |
| AgsI | TTSAA | 3 cut(s) | 325, 400, 490 |
| AjiI | CACGTC | 1 cut(s) | 67 |
| AjnI | CCWGG | 1 cut(s) | 522 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 461, 493 |
| AluBI | AGCT | 3 cut(s) | 83, 151, 305 |
| AluI | AGCT | 3 cut(s) | 83, 151, 305 |
| Alw21I | GWGCWC | 1 cut(s) | 294 |
| Alw26I | GTCTC | 2 cut(s) | 137, 268 |
| AlwI | GGATC | 2 cut(s) | 494, 507 |
| Ama87I | CYCGRG | 1 cut(s) | 287 |
| AoxI | GGCC | 2 cut(s) | 88, 246 |
| ApoI | RAATTY | 1 cut(s) | 38 |
| AspLEI | GCGC | 1 cut(s) | 464 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuC2I | CCSGG | 1 cut(s) | 113 |
| AsuHPI | GGTGA | 1 cut(s) | 371 |
| AvaI | CYCGRG | 1 cut(s) | 287 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BamHI | GGATCC | 1 cut(s) | 499 |
| BauI | CACGAG | 1 cut(s) | 32 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 1 cut(s) | 294 |
| BccI | CCATC | 1 cut(s) | 99 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 35, 69 |
| BciT130I | CCWGG | 1 cut(s) | 524 |
| BciVI | GTATCC | 1 cut(s) | 503 |
| BclI | TGATCA | 1 cut(s) | 69 |
| BcnI | CCSGG | 1 cut(s) | 113 |
| BcoDI | GTCTC | 2 cut(s) | 137, 268 |
| BfuI | GTATCC | 1 cut(s) | 503 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 245 |
| BisI | GCNGC | 1 cut(s) | 246 |
| BlsI | GCNGC | 1 cut(s) | 247 |
| Bme1390I | CCNGG | 2 cut(s) | 113, 524 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmeT110I | CYCGRG | 1 cut(s) | 287 |
| BmgBI | CACGTC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 3 cut(s) | 24, 341, 501 |
| BmrFI | CCNGG | 2 cut(s) | 113, 524 |
| BmsI | GCATC | 1 cut(s) | 445 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BpuEI | CTTGAG | 1 cut(s) | 339 |
| BpuMI | CCSGG | 1 cut(s) | 113 |
| BsaBI | GATNNNNATC | 1 cut(s) | 514 |
| BsaJI | CCNNGG | 1 cut(s) | 374 |
| BsaWI | WCCGGW | 1 cut(s) | 502 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 349, 418, 451 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| Bse1I | ACTGG | 1 cut(s) | 155 |
| Bse8I | GATNNNNATC | 1 cut(s) | 514 |
| BseBI | CCWGG | 1 cut(s) | 524 |
| BseDI | CCNNGG | 1 cut(s) | 374 |
| BseGI | GGATG | 1 cut(s) | 460 |
| BseJI | GATNNNNATC | 1 cut(s) | 514 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 349, 418, 451 |
| BseMII | CTCAG | 1 cut(s) | 320 |
| BseNI | ACTGG | 1 cut(s) | 155 |
| BseRI | GAGGAG | 2 cut(s) | 287, 323 |
| BseYI | CCCAGC | 1 cut(s) | 301 |
| Bsh1236I | CGCG | 1 cut(s) | 462 |
| BshFI | GGCC | 2 cut(s) | 90, 248 |
| BsiHKAI | GWGCWC | 1 cut(s) | 294 |
| BsiHKCI | CYCGRG | 1 cut(s) | 287 |
| BsiSI | CCGG | 5 cut(s) | 20, 87, 113, 125, 503 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 349, 418, 451 |
| BsmAI | GTCTC | 2 cut(s) | 137, 268 |
| BsmI | GAATGC | 1 cut(s) | 475 |
| BsnI | GGCC | 2 cut(s) | 90, 248 |
| BsoBI | CYCGRG | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 294 |
| Bsp143I | GATC | 4 cut(s) | 69, 309, 344, 499 |
| BspACI | CCGC | 4 cut(s) | 200, 245, 403, 473 |
| BspANI | GGCC | 2 cut(s) | 90, 248 |
| BspCNI | CTCAG | 1 cut(s) | 319 |
| BspFNI | CGCG | 1 cut(s) | 462 |
| BspLI | GGNNCC | 3 cut(s) | 24, 341, 501 |
| BspPI | GGATC | 2 cut(s) | 494, 507 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BsrI | ACTGG | 1 cut(s) | 155 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssECI | CCNNGG | 1 cut(s) | 374 |
| BssMI | GATC | 4 cut(s) | 69, 309, 344, 499 |
| BssSI | CACGAG | 1 cut(s) | 32 |
| Bst2BI | CACGAG | 1 cut(s) | 32 |
| Bst2UI | CCWGG | 1 cut(s) | 524 |
| Bst4CI | ACNGT | 2 cut(s) | 320, 375 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 470 |
| BstC8I | GCNNGC | 1 cut(s) | 460 |
| BstDEI | CTNAG | 3 cut(s) | 147, 275, 306 |
| BstDSI | CCRYGG | 1 cut(s) | 374 |
| BstF5I | GGATG | 1 cut(s) | 460 |
| BstFNI | CGCG | 1 cut(s) | 462 |
| BstHHI | GCGC | 1 cut(s) | 464 |
| BstKTI | GATC | 4 cut(s) | 72, 312, 347, 502 |
| BstMAI | GTCTC | 2 cut(s) | 137, 268 |
| BstMBI | GATC | 4 cut(s) | 69, 309, 344, 499 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 245, 251, 470 |
| BstNI | CCWGG | 1 cut(s) | 524 |
| BstNSI | RCATGY | 1 cut(s) | 214 |
| BstSCI | CCNGG | 2 cut(s) | 111, 522 |
| BstUI | CGCG | 1 cut(s) | 462 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BstX2I | RGATCY | 1 cut(s) | 499 |
| BstYI | RGATCY | 1 cut(s) | 499 |
| BsuI | GTATCC | 1 cut(s) | 503 |
| BsuRI | GGCC | 2 cut(s) | 90, 248 |
| BtgI | CCRYGG | 1 cut(s) | 374 |
| BtrI | CACGTC | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 460 |
| BtsIMutI | CAGTG | 1 cut(s) | 72 |
| Cac8I | GCNNGC | 1 cut(s) | 460 |
| CfoI | GCGC | 1 cut(s) | 464 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| Csp6I | GTAC | 2 cut(s) | 208, 214 |
| CviAII | CATG | 4 cut(s) | 173, 211, 389, 446 |
| CviQI | GTAC | 2 cut(s) | 208, 214 |
| DdeI | CTNAG | 3 cut(s) | 147, 275, 306 |
| DpnI | GATC | 4 cut(s) | 71, 311, 346, 501 |
| DpnII | GATC | 4 cut(s) | 69, 309, 344, 499 |
| EaeI | YGGCCR | 2 cut(s) | 88, 246 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco88I | CYCGRG | 1 cut(s) | 287 |
| EcoRI | GAATTC | 1 cut(s) | 38 |
| EcoRII | CCWGG | 1 cut(s) | 522 |
| FaeI | CATG | 4 cut(s) | 176, 214, 392, 449 |
| FaiI | YATR | 9 cut(s) | 106, 174, 212, 222, 369, 390, 416, 440, 447 |
| FatI | CATG | 4 cut(s) | 172, 210, 388, 445 |
| FbaI | TGATCA | 1 cut(s) | 69 |
| FblI | GTMKAC | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 1 cut(s) | 246 |
| FokI | GGATG | 1 cut(s) | 467 |
| Fsp4HI | GCNGC | 1 cut(s) | 246 |
| GlaI | GCGC | 1 cut(s) | 463 |
| GluI | GCNGC | 1 cut(s) | 246 |
| GsaI | CCCAGC | 1 cut(s) | 305 |
| HaeIII | GGCC | 2 cut(s) | 90, 248 |
| HapII | CCGG | 5 cut(s) | 20, 87, 113, 125, 503 |
| HhaI | GCGC | 1 cut(s) | 464 |
| Hin1II | CATG | 4 cut(s) | 176, 214, 392, 449 |
| Hin6I | GCGC | 1 cut(s) | 462 |
| HinP1I | GCGC | 1 cut(s) | 462 |
| HincII | GTYRAC | 1 cut(s) | 139 |
| HindII | GTYRAC | 1 cut(s) | 139 |
| HindIII | AAGCTT | 1 cut(s) | 81 |
| HinfI | GANTC | 1 cut(s) | 362 |
| HpaII | CCGG | 5 cut(s) | 20, 87, 113, 125, 503 |
| HphI | GGTGA | 1 cut(s) | 371 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188I | TCNGA | 4 cut(s) | 101, 309, 344, 499 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 429 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| Hpy99I | CGWCG | 2 cut(s) | 143, 317 |
| HpyAV | CCTTC | 2 cut(s) | 41, 173 |
| HpyCH4III | ACNGT | 2 cut(s) | 320, 375 |
| HpyCH4IV | ACGT | 1 cut(s) | 66 |
| HpyCH4V | TGCA | 2 cut(s) | 189, 392 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 245, 251, 470 |
| HpyF3I | CTNAG | 3 cut(s) | 147, 275, 306 |
| HpySE526I | ACGT | 1 cut(s) | 66 |
| Hsp92II | CATG | 4 cut(s) | 176, 214, 392, 449 |
| HspAI | GCGC | 1 cut(s) | 462 |
| Ksp22I | TGATCA | 1 cut(s) | 69 |
| Kzo9I | GATC | 4 cut(s) | 69, 309, 344, 499 |
| LmnI | GCTCC | 1 cut(s) | 345 |
| LweI | GCATC | 1 cut(s) | 445 |
| MaeII | ACGT | 1 cut(s) | 66 |
| MalI | GATC | 4 cut(s) | 71, 311, 346, 501 |
| MboI | GATC | 4 cut(s) | 69, 309, 344, 499 |
| MboII | GAAGA | 2 cut(s) | 25, 74 |
| MflI | RGATCY | 1 cut(s) | 499 |
| MhlI | GDGCHC | 1 cut(s) | 294 |
| MluCI | AATT | 1 cut(s) | 38 |
| MslI | CAYNNNNRTG | 2 cut(s) | 171, 177 |
| MspI | CCGG | 5 cut(s) | 20, 87, 113, 125, 503 |
| MspR9I | CCNGG | 2 cut(s) | 113, 524 |
| Mva1269I | GAATGC | 1 cut(s) | 475 |
| MvaI | CCWGG | 1 cut(s) | 524 |
| MvnI | CGCG | 1 cut(s) | 462 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 245, 251, 470 |
| NciI | CCSGG | 1 cut(s) | 113 |
| NdeII | GATC | 4 cut(s) | 69, 309, 344, 499 |
| NlaIII | CATG | 4 cut(s) | 176, 214, 392, 449 |
| NlaIV | GGNNCC | 3 cut(s) | 24, 341, 501 |
| NspI | RCATGY | 1 cut(s) | 214 |
| PciI | ACATGT | 1 cut(s) | 210 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 371 |
| PctI | GAATGC | 1 cut(s) | 475 |
| PfeI | GAWTC | 1 cut(s) | 362 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 451 |
| PfoI | TCCNGGA | 1 cut(s) | 111 |
| PkrI | GCNGC | 1 cut(s) | 247 |
| PscI | ACATGT | 1 cut(s) | 210 |
| Psp6I | CCWGG | 1 cut(s) | 522 |
| PspFI | CCCAGC | 1 cut(s) | 301 |
| PspGI | CCWGG | 1 cut(s) | 522 |
| PspN4I | GGNNCC | 3 cut(s) | 24, 341, 501 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PsuI | RGATCY | 1 cut(s) | 499 |
| RsaI | GTAC | 2 cut(s) | 209, 215 |
| RsaNI | GTAC | 2 cut(s) | 208, 214 |
| RseI | CAYNNNNRTG | 2 cut(s) | 171, 177 |
| SalI | GTCGAC | 1 cut(s) | 137 |
| SatI | GCNGC | 1 cut(s) | 246 |
| Sau3AI | GATC | 4 cut(s) | 69, 309, 344, 499 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| ScrFI | CCNGG | 2 cut(s) | 113, 524 |
| SduI | GDGCHC | 1 cut(s) | 294 |
| SfaNI | GCATC | 1 cut(s) | 445 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 171, 177 |
| SmlI | CTYRAG | 1 cut(s) | 354 |
| SmoI | CTYRAG | 1 cut(s) | 354 |
| Sse9I | AATT | 1 cut(s) | 38 |
| SsiI | CCGC | 4 cut(s) | 200, 245, 403, 473 |
| StyD4I | CCNGG | 2 cut(s) | 111, 522 |
| TaaI | ACNGT | 2 cut(s) | 320, 375 |
| TaiI | ACGT | 1 cut(s) | 69 |
| TaqI | TCGA | 3 cut(s) | 45, 138, 312 |
| TasI | AATT | 1 cut(s) | 38 |
| TatI | WGTACW | 1 cut(s) | 213 |
| TauI | GCSGC | 1 cut(s) | 248 |
| TfiI | GAWTC | 1 cut(s) | 362 |
| TscAI | CASTG | 1 cut(s) | 79 |
| TspDTI | ATGAA | 5 cut(s) | 31, 155, 161, 384, 462 |
| TspGWI | ACGGA | 1 cut(s) | 256 |
| TspRI | CASTG | 1 cut(s) | 79 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 451 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XapI | RAATTY | 1 cut(s) | 38 |
| XceI | RCATGY | 1 cut(s) | 214 |
| XmiI | GTMKAC | 1 cut(s) | 138 |