Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 924 |
| AccI | GTMKAC | 1 cut(s) | 639 |
| AccII | CGCG | 1 cut(s) | 873 |
| AciI | CCGC | 5 cut(s) | 70, 796, 819, 833, 871 |
| AclWI | GGATC | 3 cut(s) | 656, 724, 741 |
| AcuI | CTGAAG | 3 cut(s) | 21, 266, 480 |
| AfaI | GTAC | 1 cut(s) | 630 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 409, 601, 680, 709, 775, 924 |
| AgsI | TTSAA | 3 cut(s) | 250, 541, 709 |
| AjnI | CCWGG | 1 cut(s) | 43 |
| AluBI | AGCT | 7 cut(s) | 229, 362, 479, 490, 494, 811, 921 |
| AluI | AGCT | 7 cut(s) | 229, 362, 479, 490, 494, 811, 921 |
| Alw21I | GWGCWC | 1 cut(s) | 231 |
| Alw26I | GTCTC | 1 cut(s) | 303 |
| AlwI | GGATC | 3 cut(s) | 656, 724, 741 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 44, 651 |
| Ama87I | CYCGRG | 1 cut(s) | 474 |
| AoxI | GGCC | 5 cut(s) | 372, 611, 766, 915, 927 |
| ApeKI | GCWGC | 4 cut(s) | 470, 479, 855, 862 |
| AspS9I | GGNCC | 4 cut(s) | 372, 699, 915, 927 |
| AsuC2I | CCSGG | 2 cut(s) | 703, 728 |
| AsuHPI | GGTGA | 2 cut(s) | 504, 833 |
| AsuII | TTCGAA | 1 cut(s) | 668 |
| AsuNHI | GCTAGC | 1 cut(s) | 490 |
| AvaI | CYCGRG | 1 cut(s) | 474 |
| AvaII | GGWCC | 1 cut(s) | 699 |
| BaeGI | GKGCMC | 1 cut(s) | 871 |
| BanII | GRGCYC | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 1 cut(s) | 231 |
| BbvI | GCAGC | 4 cut(s) | 457, 466, 842, 874 |
| BccI | CCATC | 4 cut(s) | 565, 758, 845, 895 |
| BceAI | ACGGC | 2 cut(s) | 151, 168 |
| BciT130I | CCWGG | 1 cut(s) | 45 |
| BclI | TGATCA | 1 cut(s) | 172 |
| BcnI | CCSGG | 2 cut(s) | 703, 728 |
| BcoDI | GTCTC | 1 cut(s) | 303 |
| BfaI | CTAG | 2 cut(s) | 491, 617 |
| BisI | GCNGC | 5 cut(s) | 471, 480, 834, 856, 863 |
| BlsI | GCNGC | 5 cut(s) | 472, 481, 835, 857, 864 |
| BmcAI | AGTACT | 1 cut(s) | 630 |
| Bme1390I | CCNGG | 3 cut(s) | 45, 703, 728 |
| Bme18I | GGWCC | 1 cut(s) | 699 |
| BmeT110I | CYCGRG | 1 cut(s) | 474 |
| BmgT120I | GGNCC | 4 cut(s) | 372, 699, 915, 927 |
| BmiI | GGNNCC | 3 cut(s) | 165, 701, 802 |
| BmrFI | CCNGG | 3 cut(s) | 45, 703, 728 |
| BmtI | GCTAGC | 1 cut(s) | 494 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 295, 327 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| Bpu10I | CCTNAGC | 1 cut(s) | 225 |
| Bpu14I | TTCGAA | 1 cut(s) | 668 |
| BpuMI | CCSGG | 2 cut(s) | 703, 728 |
| BsaJI | CCNNGG | 1 cut(s) | 465 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 242, 272 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 409, 601, 680, 709, 775, 924 |
| Bse118I | RCCGGY | 1 cut(s) | 378 |
| Bse1I | ACTGG | 2 cut(s) | 109, 167 |
| Bse3DI | GCAATG | 1 cut(s) | 453 |
| BseBI | CCWGG | 1 cut(s) | 45 |
| BseDI | CCNNGG | 1 cut(s) | 465 |
| BseGI | GGATG | 2 cut(s) | 573, 876 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 409, 601, 680, 709, 775, 924 |
| BseMI | GCAATG | 1 cut(s) | 453 |
| BseMII | CTCAG | 6 cut(s) | 216, 285, 293, 432, 691, 895 |
| BseNI | ACTGG | 2 cut(s) | 109, 167 |
| BseRI | GAGGAG | 1 cut(s) | 389 |
| BseSI | GKGCMC | 1 cut(s) | 871 |
| BseXI | GCAGC | 4 cut(s) | 457, 466, 842, 874 |
| BseYI | CCCAGC | 2 cut(s) | 811, 912 |
| Bsh1236I | CGCG | 1 cut(s) | 873 |
| BshFI | GGCC | 5 cut(s) | 374, 613, 768, 917, 929 |
| BsiHKAI | GWGCWC | 1 cut(s) | 231 |
| BsiHKCI | CYCGRG | 1 cut(s) | 474 |
| BsiSI | CCGG | 3 cut(s) | 379, 703, 727 |
| BslFI | GGGAC | 1 cut(s) | 685 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 409, 601, 680, 709, 775, 924 |
| BsmAI | GTCTC | 1 cut(s) | 303 |
| BsmFI | GGGAC | 1 cut(s) | 685 |
| BsnI | GGCC | 5 cut(s) | 374, 613, 768, 917, 929 |
| BsoBI | CYCGRG | 1 cut(s) | 474 |
| Bsp119I | TTCGAA | 1 cut(s) | 668 |
| Bsp1286I | GDGCHC | 2 cut(s) | 231, 871 |
| Bsp143I | GATC | 5 cut(s) | 172, 394, 648, 716, 733 |
| BspACI | CCGC | 5 cut(s) | 70, 796, 819, 833, 871 |
| BspANI | GGCC | 5 cut(s) | 374, 613, 768, 917, 929 |
| BspCNI | CTCAG | 6 cut(s) | 217, 286, 294, 431, 690, 894 |
| BspFNI | CGCG | 1 cut(s) | 873 |
| BspLI | GGNNCC | 3 cut(s) | 165, 701, 802 |
| BspOI | GCTAGC | 1 cut(s) | 494 |
| BspPI | GGATC | 3 cut(s) | 656, 724, 741 |
| BspQI | GCTCTTC | 1 cut(s) | 85 |
| BspT104I | TTCGAA | 1 cut(s) | 668 |
| BsrDI | GCAATG | 1 cut(s) | 453 |
| BsrFI | RCCGGY | 1 cut(s) | 378 |
| BsrI | ACTGG | 2 cut(s) | 109, 167 |
| BssAI | RCCGGY | 1 cut(s) | 378 |
| BssECI | CCNNGG | 1 cut(s) | 465 |
| BssMI | GATC | 5 cut(s) | 172, 394, 648, 716, 733 |
| BssT1I | CCWWGG | 1 cut(s) | 465 |
| Bst2UI | CCWGG | 1 cut(s) | 45 |
| Bst4CI | ACNGT | 1 cut(s) | 97 |
| Bst6I | CTCTTC | 3 cut(s) | 14, 85, 451 |
| BstBI | TTCGAA | 1 cut(s) | 668 |
| BstC8I | GCNNGC | 7 cut(s) | 376, 380, 492, 860, 867, 871, 919 |
| BstDEI | CTNAG | 8 cut(s) | 127, 156, 225, 294, 302, 418, 677, 881 |
| BstF5I | GGATG | 2 cut(s) | 573, 876 |
| BstFNI | CGCG | 1 cut(s) | 873 |
| BstKTI | GATC | 5 cut(s) | 175, 397, 651, 719, 736 |
| BstMAI | GTCTC | 1 cut(s) | 303 |
| BstMBI | GATC | 5 cut(s) | 172, 394, 648, 716, 733 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 388, 470, 476, 479, 855, 918 |
| BstNI | CCWGG | 1 cut(s) | 45 |
| BstSCI | CCNGG | 3 cut(s) | 43, 701, 726 |
| BstSLI | GKGCMC | 1 cut(s) | 871 |
| BstUI | CGCG | 1 cut(s) | 873 |
| BstV1I | GCAGC | 4 cut(s) | 457, 466, 842, 874 |
| BstX2I | RGATCY | 2 cut(s) | 648, 716 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 100 |
| BstYI | RGATCY | 2 cut(s) | 648, 716 |
| BsuRI | GGCC | 5 cut(s) | 374, 613, 768, 917, 929 |
| BtgZI | GCGATG | 1 cut(s) | 864 |
| BtsCI | GGATG | 2 cut(s) | 573, 876 |
| BtsI | GCAGTG | 1 cut(s) | 789 |
| BtsIMutI | CAGTG | 4 cut(s) | 93, 685, 789, 889 |
| Cac8I | GCNNGC | 7 cut(s) | 376, 380, 492, 860, 867, 871, 919 |
| CaiI | CAGNNNCTG | 2 cut(s) | 44, 651 |
| Cfr10I | RCCGGY | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 4 cut(s) | 372, 699, 915, 927 |
| CseI | GACGC | 1 cut(s) | 862 |
| Csp6I | GTAC | 1 cut(s) | 629 |
| CviAII | CATG | 3 cut(s) | 241, 826, 837 |
| CviQI | GTAC | 1 cut(s) | 629 |
| DdeI | CTNAG | 8 cut(s) | 127, 156, 225, 294, 302, 418, 677, 881 |
| DpnI | GATC | 5 cut(s) | 174, 396, 650, 718, 735 |
| DpnII | GATC | 5 cut(s) | 172, 394, 648, 716, 733 |
| Eam1104I | CTCTTC | 3 cut(s) | 14, 85, 451 |
| EarI | CTCTTC | 3 cut(s) | 14, 85, 451 |
| Ecl136II | GAGCTC | 1 cut(s) | 229 |
| Eco130I | CCWWGG | 1 cut(s) | 465 |
| Eco24I | GRGCYC | 1 cut(s) | 231 |
| Eco47I | GGWCC | 1 cut(s) | 699 |
| Eco53kI | GAGCTC | 1 cut(s) | 229 |
| Eco57I | CTGAAG | 3 cut(s) | 21, 266, 480 |
| Eco88I | CYCGRG | 1 cut(s) | 474 |
| EcoICRI | GAGCTC | 1 cut(s) | 229 |
| EcoRII | CCWGG | 1 cut(s) | 43 |
| EcoT14I | CCWWGG | 1 cut(s) | 465 |
| EcoT22I | ATGCAT | 1 cut(s) | 246 |
| EcoT38I | GRGCYC | 1 cut(s) | 231 |
| ErhI | CCWWGG | 1 cut(s) | 465 |
| FaeI | CATG | 3 cut(s) | 244, 829, 840 |
| FaiI | YATR | 6 cut(s) | 86, 177, 242, 353, 827, 838 |
| FaqI | GGGAC | 1 cut(s) | 685 |
| FatI | CATG | 3 cut(s) | 240, 825, 836 |
| FauI | CCCGC | 3 cut(s) | 63, 789, 878 |
| FbaI | TGATCA | 1 cut(s) | 172 |
| FblI | GTMKAC | 1 cut(s) | 639 |
| Fnu4HI | GCNGC | 5 cut(s) | 471, 480, 834, 856, 863 |
| FokI | GGATG | 2 cut(s) | 580, 863 |
| FriOI | GRGCYC | 1 cut(s) | 231 |
| Fsp4HI | GCNGC | 5 cut(s) | 471, 480, 834, 856, 863 |
| FspBI | CTAG | 2 cut(s) | 491, 617 |
| GluI | GCNGC | 5 cut(s) | 471, 480, 834, 856, 863 |
| GsaI | CCCAGC | 2 cut(s) | 815, 916 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HaeIII | GGCC | 5 cut(s) | 374, 613, 768, 917, 929 |
| HapII | CCGG | 3 cut(s) | 379, 703, 727 |
| HgaI | GACGC | 1 cut(s) | 862 |
| Hin1II | CATG | 3 cut(s) | 244, 829, 840 |
| HinfI | GANTC | 3 cut(s) | 296, 367, 527 |
| HpaII | CCGG | 3 cut(s) | 379, 703, 727 |
| HphI | GGTGA | 2 cut(s) | 504, 833 |
| Hpy166II | GTNNAC | 4 cut(s) | 61, 124, 308, 640 |
| Hpy188I | TCNGA | 7 cut(s) | 285, 303, 366, 421, 451, 532, 596 |
| Hpy188III | TCNNGA | 1 cut(s) | 114 |
| Hpy8I | GTNNAC | 4 cut(s) | 61, 124, 308, 640 |
| HpyAV | CCTTC | 2 cut(s) | 535, 703 |
| HpyCH4III | ACNGT | 1 cut(s) | 97 |
| HpyCH4IV | ACGT | 1 cut(s) | 385 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 244, 346, 862 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 388, 470, 476, 479, 855, 918 |
| HpyF3I | CTNAG | 8 cut(s) | 127, 156, 225, 294, 302, 418, 677, 881 |
| HpySE526I | ACGT | 1 cut(s) | 385 |
| Hsp92II | CATG | 3 cut(s) | 244, 829, 840 |
| KroI | GCCGGC | 1 cut(s) | 378 |
| KroNI | GCCGGC | 1 cut(s) | 380 |
| Ksp22I | TGATCA | 1 cut(s) | 172 |
| Kzo9I | GATC | 5 cut(s) | 172, 394, 648, 716, 733 |
| LguI | GCTCTTC | 1 cut(s) | 85 |
| LmnI | GCTCC | 3 cut(s) | 163, 234, 367 |
| Lsp1109I | GCAGC | 4 cut(s) | 457, 466, 842, 874 |
| MaeI | CTAG | 2 cut(s) | 491, 617 |
| MaeII | ACGT | 1 cut(s) | 385 |
| MaeIII | GTNAC | 3 cut(s) | 149, 203, 821 |
| MalI | GATC | 5 cut(s) | 174, 396, 650, 718, 735 |
| MboI | GATC | 5 cut(s) | 172, 394, 648, 716, 733 |
| MboII | GAAGA | 3 cut(s) | 31, 72, 438 |
| MflI | RGATCY | 2 cut(s) | 648, 716 |
| MhlI | GDGCHC | 2 cut(s) | 231, 871 |
| MluCI | AATT | 4 cut(s) | 214, 286, 318, 522 |
| MlyI | GAGTC | 2 cut(s) | 305, 536 |
| MmeI | TCCRAC | 1 cut(s) | 252 |
| Mph1103I | ATGCAT | 1 cut(s) | 246 |
| MroNI | GCCGGC | 1 cut(s) | 378 |
| MseI | TTAA | 3 cut(s) | 317, 549, 806 |
| MspA1I | CMGCKG | 1 cut(s) | 921 |
| MspI | CCGG | 3 cut(s) | 379, 703, 727 |
| MspR9I | CCNGG | 3 cut(s) | 45, 703, 728 |
| MvaI | CCWGG | 1 cut(s) | 45 |
| MvnI | CGCG | 1 cut(s) | 873 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 388, 470, 476, 479, 855, 918 |
| NaeI | GCCGGC | 1 cut(s) | 380 |
| NciI | CCSGG | 2 cut(s) | 703, 728 |
| NdeII | GATC | 5 cut(s) | 172, 394, 648, 716, 733 |
| NgoMIV | GCCGGC | 1 cut(s) | 378 |
| NheI | GCTAGC | 1 cut(s) | 490 |
| NlaIII | CATG | 3 cut(s) | 244, 829, 840 |
| NlaIV | GGNNCC | 3 cut(s) | 165, 701, 802 |
| NmuCI | GTSAC | 2 cut(s) | 203, 821 |
| NsiI | ATGCAT | 1 cut(s) | 246 |
| NspV | TTCGAA | 1 cut(s) | 668 |
| PciSI | GCTCTTC | 1 cut(s) | 85 |
| PdiI | GCCGGC | 1 cut(s) | 380 |
| PfeI | GAWTC | 1 cut(s) | 367 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 924 |
| PkrI | GCNGC | 5 cut(s) | 472, 481, 835, 857, 864 |
| PleI | GAGTC | 2 cut(s) | 304, 535 |
| PpsI | GAGTC | 2 cut(s) | 304, 535 |
| Psp124BI | GAGCTC | 1 cut(s) | 231 |
| Psp6I | CCWGG | 1 cut(s) | 43 |
| PspFI | CCCAGC | 2 cut(s) | 811, 912 |
| PspGI | CCWGG | 1 cut(s) | 43 |
| PspN4I | GGNNCC | 3 cut(s) | 165, 701, 802 |
| PspPI | GGNCC | 4 cut(s) | 372, 699, 915, 927 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 125, 157 |
| PstNI | CAGNNNCTG | 2 cut(s) | 44, 651 |
| PsuI | RGATCY | 2 cut(s) | 648, 716 |
| PvuII | CAGCTG | 1 cut(s) | 921 |
| RsaI | GTAC | 1 cut(s) | 630 |
| RsaNI | GTAC | 1 cut(s) | 629 |
| SacI | GAGCTC | 1 cut(s) | 231 |
| SapI | GCTCTTC | 1 cut(s) | 85 |
| SaqAI | TTAA | 3 cut(s) | 317, 549, 806 |
| SatI | GCNGC | 5 cut(s) | 471, 480, 834, 856, 863 |
| Sau3AI | GATC | 5 cut(s) | 172, 394, 648, 716, 733 |
| Sau96I | GGNCC | 4 cut(s) | 372, 699, 915, 927 |
| ScaI | AGTACT | 1 cut(s) | 630 |
| SchI | GAGTC | 2 cut(s) | 305, 536 |
| ScrFI | CCNGG | 3 cut(s) | 45, 703, 728 |
| SduI | GDGCHC | 2 cut(s) | 231, 871 |
| SfuI | TTCGAA | 1 cut(s) | 668 |
| SinI | GGWCC | 1 cut(s) | 699 |
| Sse9I | AATT | 4 cut(s) | 214, 286, 318, 522 |
| SsiI | CCGC | 5 cut(s) | 70, 796, 819, 833, 871 |
| SspMI | CTAG | 2 cut(s) | 491, 617 |
| SstI | GAGCTC | 1 cut(s) | 231 |
| StyD4I | CCNGG | 3 cut(s) | 43, 701, 726 |
| StyI | CCWWGG | 1 cut(s) | 465 |
| TaaI | ACNGT | 1 cut(s) | 97 |
| TaiI | ACGT | 1 cut(s) | 388 |
| TaqI | TCGA | 5 cut(s) | 434, 577, 633, 668, 751 |
| TasI | AATT | 4 cut(s) | 214, 286, 318, 522 |
| TatI | WGTACW | 1 cut(s) | 628 |
| TauI | GCSGC | 1 cut(s) | 836 |
| TfiI | GAWTC | 1 cut(s) | 367 |
| Tru1I | TTAA | 3 cut(s) | 317, 549, 806 |
| Tru9I | TTAA | 3 cut(s) | 317, 549, 806 |
| TscAI | CASTG | 4 cut(s) | 100, 685, 789, 889 |
| TseFI | GTSAC | 2 cut(s) | 203, 821 |
| TseI | GCWGC | 4 cut(s) | 470, 479, 855, 862 |
| Tsp45I | GTSAC | 2 cut(s) | 203, 821 |
| TspDTI | ATGAA | 1 cut(s) | 199 |
| TspGWI | ACGGA | 1 cut(s) | 221 |
| TspRI | CASTG | 4 cut(s) | 100, 685, 789, 889 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 924 |
| VpaK11BI | GGWCC | 1 cut(s) | 699 |
| XmiI | GTMKAC | 1 cut(s) | 639 |
| XspI | CTAG | 2 cut(s) | 491, 617 |
| ZrmI | AGTACT | 1 cut(s) | 630 |
| Zsp2I | ATGCAT | 1 cut(s) | 246 |