Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 37 - 117 | 1.3e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 45 |
| AciI | CCGC | 1 cut(s) | 314 |
| AfaI | GTAC | 3 cut(s) | 163, 404, 437 |
| AgsI | TTSAA | 5 cut(s) | 53, 62, 227, 287, 395 |
| AluBI | AGCT | 3 cut(s) | 173, 239, 383 |
| AluI | AGCT | 3 cut(s) | 173, 239, 383 |
| Alw21I | GWGCWC | 1 cut(s) | 385 |
| Alw26I | GTCTC | 1 cut(s) | 248 |
| ApeKI | GCWGC | 1 cut(s) | 173 |
| AspS9I | GGNCC | 1 cut(s) | 13 |
| AsuHPI | GGTGA | 1 cut(s) | 251 |
| AvaII | GGWCC | 1 cut(s) | 13 |
| BanI | GGYRCC | 1 cut(s) | 45 |
| BanII | GRGCYC | 1 cut(s) | 385 |
| Bbv12I | GWGCWC | 1 cut(s) | 385 |
| BbvI | GCAGC | 1 cut(s) | 160 |
| BccI | CCATC | 1 cut(s) | 117 |
| BclI | TGATCA | 1 cut(s) | 270 |
| BcoDI | GTCTC | 1 cut(s) | 248 |
| BfaI | CTAG | 1 cut(s) | 398 |
| BfmI | CTRYAG | 1 cut(s) | 70 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 74 |
| BisI | GCNGC | 1 cut(s) | 174 |
| BlsI | GCNGC | 1 cut(s) | 175 |
| Bme18I | GGWCC | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 1 cut(s) | 13 |
| BmiI | GGNNCC | 1 cut(s) | 47 |
| BmsI | GCATC | 1 cut(s) | 86 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 228, 260 |
| BsaI | GGTCTC | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 1 cut(s) | 262 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 323, 353 |
| BseDI | CCNNGG | 1 cut(s) | 262 |
| BseGI | GGATG | 1 cut(s) | 128 |
| BseXI | GCAGC | 1 cut(s) | 160 |
| BshNI | GGYRCC | 1 cut(s) | 45 |
| BsiHKAI | GWGCWC | 1 cut(s) | 385 |
| BsiSI | CCGG | 1 cut(s) | 251 |
| BsmAI | GTCTC | 1 cut(s) | 248 |
| Bso31I | GGTCTC | 1 cut(s) | 248 |
| Bsp1286I | GDGCHC | 1 cut(s) | 385 |
| Bsp1407I | TGTACA | 1 cut(s) | 435 |
| Bsp143I | GATC | 2 cut(s) | 203, 270 |
| BspACI | CCGC | 1 cut(s) | 314 |
| BspLI | GGNNCC | 1 cut(s) | 47 |
| BspT107I | GGYRCC | 1 cut(s) | 45 |
| BspTNI | GGTCTC | 1 cut(s) | 248 |
| BsrGI | TGTACA | 1 cut(s) | 435 |
| BssECI | CCNNGG | 1 cut(s) | 262 |
| BssMI | GATC | 2 cut(s) | 203, 270 |
| BssT1I | CCWWGG | 1 cut(s) | 262 |
| Bst4CI | ACNGT | 1 cut(s) | 407 |
| BstAUI | TGTACA | 1 cut(s) | 435 |
| BstC8I | GCNNGC | 1 cut(s) | 184 |
| BstF5I | GGATG | 1 cut(s) | 128 |
| BstKTI | GATC | 2 cut(s) | 206, 273 |
| BstMAI | GTCTC | 1 cut(s) | 248 |
| BstMBI | GATC | 2 cut(s) | 203, 270 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 74, 179, 206, 236, 454 |
| BstSFI | CTRYAG | 1 cut(s) | 70 |
| BstV1I | GCAGC | 1 cut(s) | 160 |
| BtgZI | GCGATG | 1 cut(s) | 245 |
| BtsCI | GGATG | 1 cut(s) | 128 |
| Cac8I | GCNNGC | 1 cut(s) | 184 |
| Cfr13I | GGNCC | 1 cut(s) | 13 |
| Csp6I | GTAC | 3 cut(s) | 162, 403, 436 |
| CviAII | CATG | 2 cut(s) | 217, 268 |
| CviJI | RGCY | 5 cut(s) | 173, 239, 254, 373, 383 |
| CviKI_1 | RGCY | 5 cut(s) | 173, 239, 254, 373, 383 |
| CviQI | GTAC | 3 cut(s) | 162, 403, 436 |
| DpnI | GATC | 2 cut(s) | 205, 272 |
| DpnII | GATC | 2 cut(s) | 203, 270 |
| Ecl136II | GAGCTC | 1 cut(s) | 383 |
| Eco130I | CCWWGG | 1 cut(s) | 262 |
| Eco24I | GRGCYC | 1 cut(s) | 385 |
| Eco31I | GGTCTC | 1 cut(s) | 248 |
| Eco47I | GGWCC | 1 cut(s) | 13 |
| Eco53kI | GAGCTC | 1 cut(s) | 383 |
| EcoICRI | GAGCTC | 1 cut(s) | 383 |
| EcoT14I | CCWWGG | 1 cut(s) | 262 |
| EcoT38I | GRGCYC | 1 cut(s) | 385 |
| ErhI | CCWWGG | 1 cut(s) | 262 |
| FaeI | CATG | 2 cut(s) | 220, 271 |
| FaiI | YATR | 7 cut(s) | 218, 269, 302, 329, 412, 414, 440 |
| FatI | CATG | 2 cut(s) | 216, 267 |
| FbaI | TGATCA | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 1 cut(s) | 174 |
| FokI | GGATG | 1 cut(s) | 135 |
| FriOI | GRGCYC | 1 cut(s) | 385 |
| Fsp4HI | GCNGC | 1 cut(s) | 174 |
| FspBI | CTAG | 1 cut(s) | 398 |
| GluI | GCNGC | 1 cut(s) | 174 |
| HapII | CCGG | 1 cut(s) | 251 |
| Hin1II | CATG | 2 cut(s) | 220, 271 |
| HpaII | CCGG | 1 cut(s) | 251 |
| HphI | GGTGA | 1 cut(s) | 251 |
| Hpy166II | GTNNAC | 1 cut(s) | 110 |
| Hpy188I | TCNGA | 2 cut(s) | 94, 380 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 418 |
| Hpy8I | GTNNAC | 1 cut(s) | 110 |
| HpyAV | CCTTC | 3 cut(s) | 32, 59, 257 |
| HpyCH4III | ACNGT | 1 cut(s) | 407 |
| HpyCH4IV | ACGT | 2 cut(s) | 164, 462 |
| HpyCH4V | TGCA | 2 cut(s) | 182, 368 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 74, 179, 206, 236, 454 |
| HpySE526I | ACGT | 2 cut(s) | 164, 462 |
| Hsp92II | CATG | 2 cut(s) | 220, 271 |
| Ksp22I | TGATCA | 1 cut(s) | 270 |
| Kzo9I | GATC | 2 cut(s) | 203, 270 |
| LpnPI | CCDG | 3 cut(s) | 82, 225, 264 |
| Lsp1109I | GCAGC | 1 cut(s) | 160 |
| LweI | GCATC | 1 cut(s) | 86 |
| MaeI | CTAG | 1 cut(s) | 398 |
| MaeII | ACGT | 2 cut(s) | 164, 462 |
| MaeIII | GTNAC | 1 cut(s) | 307 |
| MalI | GATC | 2 cut(s) | 205, 272 |
| MboI | GATC | 2 cut(s) | 203, 270 |
| MhlI | GDGCHC | 1 cut(s) | 385 |
| MluCI | AATT | 3 cut(s) | 7, 132, 222 |
| MmeI | TCCRAC | 1 cut(s) | 117 |
| MnlI | CCTC | 4 cut(s) | 122, 325, 354, 463 |
| MseI | TTAA | 1 cut(s) | 318 |
| MspI | CCGG | 1 cut(s) | 251 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 74, 179, 206, 236, 454 |
| NdeII | GATC | 2 cut(s) | 203, 270 |
| NlaIII | CATG | 2 cut(s) | 220, 271 |
| NlaIV | GGNNCC | 1 cut(s) | 47 |
| PkrI | GCNGC | 1 cut(s) | 175 |
| Psp124BI | GAGCTC | 1 cut(s) | 385 |
| PspN4I | GGNNCC | 1 cut(s) | 47 |
| PspPI | GGNCC | 1 cut(s) | 13 |
| RsaI | GTAC | 3 cut(s) | 163, 404, 437 |
| RsaNI | GTAC | 3 cut(s) | 162, 403, 436 |
| SacI | GAGCTC | 1 cut(s) | 385 |
| SaqAI | TTAA | 1 cut(s) | 318 |
| SatI | GCNGC | 1 cut(s) | 174 |
| Sau3AI | GATC | 2 cut(s) | 203, 270 |
| Sau96I | GGNCC | 1 cut(s) | 13 |
| SduI | GDGCHC | 1 cut(s) | 385 |
| SetI | ASST | 7 cut(s) | 51, 167, 175, 241, 385, 455, 465 |
| SfaNI | GCATC | 1 cut(s) | 86 |
| SfcI | CTRYAG | 1 cut(s) | 70 |
| SinI | GGWCC | 1 cut(s) | 13 |
| Sse9I | AATT | 3 cut(s) | 7, 132, 222 |
| SsiI | CCGC | 1 cut(s) | 314 |
| SspI | AATATT | 1 cut(s) | 277 |
| SspMI | CTAG | 1 cut(s) | 398 |
| SstI | GAGCTC | 1 cut(s) | 385 |
| StyI | CCWWGG | 1 cut(s) | 262 |
| TaaI | ACNGT | 1 cut(s) | 407 |
| TaiI | ACGT | 2 cut(s) | 167, 465 |
| TaqI | TCGA | 3 cut(s) | 148, 202, 341 |
| TasI | AATT | 3 cut(s) | 7, 132, 222 |
| TatI | WGTACW | 1 cut(s) | 435 |
| Tru1I | TTAA | 1 cut(s) | 318 |
| Tru9I | TTAA | 1 cut(s) | 318 |
| TseI | GCWGC | 1 cut(s) | 173 |
| TspDTI | ATGAA | 2 cut(s) | 77, 168 |
| VpaK11BI | GGWCC | 1 cut(s) | 13 |
| XspI | CTAG | 1 cut(s) | 398 |