Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 2 cut(s) | 107, 146 |
| AcyI | GRCGYC | 1 cut(s) | 130 |
| AfaI | GTAC | 2 cut(s) | 114, 377 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 62, 397 |
| AgsI | TTSAA | 1 cut(s) | 244 |
| AjiI | CACGTC | 1 cut(s) | 193 |
| AjnI | CCWGG | 1 cut(s) | 298 |
| AluBI | AGCT | 7 cut(s) | 59, 93, 161, 170, 184, 266, 370 |
| AluI | AGCT | 7 cut(s) | 59, 93, 161, 170, 184, 266, 370 |
| Ama87I | CYCGRG | 2 cut(s) | 156, 287 |
| AoxI | GGCC | 1 cut(s) | 387 |
| ApeKI | GCWGC | 1 cut(s) | 161 |
| AspS9I | GGNCC | 2 cut(s) | 178, 388 |
| AsuHPI | GGTGA | 1 cut(s) | 374 |
| AvaI | CYCGRG | 2 cut(s) | 156, 287 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 216, 248, 359, 391 |
| BauI | CACGAG | 1 cut(s) | 17 |
| BbvI | GCAGC | 1 cut(s) | 148 |
| BccI | CCATC | 2 cut(s) | 379, 400 |
| BceAI | ACGGC | 1 cut(s) | 59 |
| BciT130I | CCWGG | 1 cut(s) | 300 |
| BfaI | CTAG | 1 cut(s) | 167 |
| BisI | GCNGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 1 cut(s) | 163 |
| BmcAI | AGTACT | 1 cut(s) | 377 |
| Bme1390I | CCNGG | 1 cut(s) | 300 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmeT110I | CYCGRG | 2 cut(s) | 156, 287 |
| BmgBI | CACGTC | 1 cut(s) | 193 |
| BmgT120I | GGNCC | 2 cut(s) | 178, 388 |
| BmiI | GGNNCC | 2 cut(s) | 54, 179 |
| BmrFI | CCNGG | 1 cut(s) | 300 |
| BmsI | GCATC | 4 cut(s) | 55, 244, 264, 340 |
| BpmI | CTGGAG | 2 cut(s) | 39, 392 |
| BpuEI | CTTGAG | 1 cut(s) | 280 |
| BsaAI | YACGTR | 1 cut(s) | 116 |
| BsaHI | GRCGYC | 1 cut(s) | 130 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 62, 397 |
| BseBI | CCWGG | 1 cut(s) | 300 |
| BseGI | GGATG | 2 cut(s) | 279, 411 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 62, 397 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseXI | GCAGC | 1 cut(s) | 148 |
| BshFI | GGCC | 1 cut(s) | 389 |
| BsiHKCI | CYCGRG | 2 cut(s) | 156, 287 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 62, 397 |
| BsnI | GGCC | 1 cut(s) | 389 |
| BsoBI | CYCGRG | 2 cut(s) | 156, 287 |
| Bsp143I | GATC | 1 cut(s) | 69 |
| BspANI | GGCC | 1 cut(s) | 389 |
| BspCNI | CTCAG | 1 cut(s) | 200 |
| BspLI | GGNNCC | 2 cut(s) | 54, 179 |
| BssMI | GATC | 1 cut(s) | 69 |
| BssNI | GRCGYC | 1 cut(s) | 130 |
| BssSI | CACGAG | 1 cut(s) | 17 |
| Bst2BI | CACGAG | 1 cut(s) | 17 |
| Bst2UI | CCWGG | 1 cut(s) | 300 |
| Bst4CI | ACNGT | 1 cut(s) | 251 |
| BstACI | GRCGYC | 1 cut(s) | 130 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 73, 283 |
| BstBAI | YACGTR | 1 cut(s) | 116 |
| BstC8I | GCNNGC | 1 cut(s) | 123 |
| BstDEI | CTNAG | 2 cut(s) | 171, 187 |
| BstF5I | GGATG | 2 cut(s) | 279, 411 |
| BstKTI | GATC | 1 cut(s) | 72 |
| BstMBI | GATC | 1 cut(s) | 69 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 73, 127, 167, 263, 283 |
| BstNI | CCWGG | 1 cut(s) | 300 |
| BstNSI | RCATGY | 1 cut(s) | 125 |
| BstSCI | CCNGG | 1 cut(s) | 298 |
| BstSNI | TACGTA | 1 cut(s) | 116 |
| BstV1I | GCAGC | 1 cut(s) | 148 |
| BsuRI | GGCC | 1 cut(s) | 389 |
| BtrI | CACGTC | 1 cut(s) | 193 |
| BtsCI | GGATG | 2 cut(s) | 279, 411 |
| Cac8I | GCNNGC | 1 cut(s) | 123 |
| Cfr13I | GGNCC | 2 cut(s) | 178, 388 |
| CseI | GACGC | 1 cut(s) | 119 |
| CsiI | ACCWGGT | 1 cut(s) | 298 |
| Csp6I | GTAC | 2 cut(s) | 113, 376 |
| CviAII | CATG | 3 cut(s) | 10, 122, 126 |
| CviQI | GTAC | 2 cut(s) | 113, 376 |
| DdeI | CTNAG | 2 cut(s) | 171, 187 |
| DpnI | GATC | 1 cut(s) | 71 |
| DpnII | GATC | 1 cut(s) | 69 |
| Eco105I | TACGTA | 1 cut(s) | 116 |
| Eco32I | GATATC | 1 cut(s) | 7 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| Eco88I | CYCGRG | 2 cut(s) | 156, 287 |
| EcoRII | CCWGG | 1 cut(s) | 298 |
| EcoRV | GATATC | 1 cut(s) | 7 |
| EcoT22I | ATGCAT | 3 cut(s) | 123, 127, 279 |
| FaeI | CATG | 3 cut(s) | 13, 125, 129 |
| FaiI | YATR | 8 cut(s) | 11, 84, 96, 119, 123, 127, 279, 344 |
| FatI | CATG | 3 cut(s) | 9, 121, 125 |
| Fnu4HI | GCNGC | 1 cut(s) | 162 |
| FokI | GGATG | 1 cut(s) | 286 |
| Fsp4HI | GCNGC | 1 cut(s) | 162 |
| FspBI | CTAG | 1 cut(s) | 167 |
| GluI | GCNGC | 1 cut(s) | 162 |
| GsuI | CTGGAG | 2 cut(s) | 39, 392 |
| HaeIII | GGCC | 1 cut(s) | 389 |
| HgaI | GACGC | 1 cut(s) | 119 |
| Hin1I | GRCGYC | 1 cut(s) | 130 |
| Hin1II | CATG | 3 cut(s) | 13, 125, 129 |
| HincII | GTYRAC | 1 cut(s) | 105 |
| HindII | GTYRAC | 1 cut(s) | 105 |
| HpaI | GTTAAC | 1 cut(s) | 105 |
| HphI | GGTGA | 1 cut(s) | 374 |
| Hpy166II | GTNNAC | 1 cut(s) | 105 |
| Hpy188I | TCNGA | 1 cut(s) | 190 |
| Hpy188III | TCNNGA | 3 cut(s) | 271, 323, 382 |
| Hpy8I | GTNNAC | 1 cut(s) | 105 |
| HpyCH4III | ACNGT | 1 cut(s) | 251 |
| HpyCH4IV | ACGT | 5 cut(s) | 107, 115, 146, 192, 327 |
| HpyCH4V | TGCA | 5 cut(s) | 76, 121, 125, 277, 353 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 73, 127, 167, 263, 283 |
| HpyF3I | CTNAG | 2 cut(s) | 171, 187 |
| HpySE526I | ACGT | 5 cut(s) | 107, 115, 146, 192, 327 |
| Hsp92I | GRCGYC | 1 cut(s) | 130 |
| Hsp92II | CATG | 3 cut(s) | 13, 125, 129 |
| KspAI | GTTAAC | 1 cut(s) | 105 |
| Kzo9I | GATC | 1 cut(s) | 69 |
| LmnI | GCTCC | 1 cut(s) | 58 |
| LpnPI | CCDG | 8 cut(s) | 35, 69, 119, 194, 256, 285, 312, 356 |
| Lsp1109I | GCAGC | 1 cut(s) | 148 |
| LweI | GCATC | 4 cut(s) | 55, 244, 264, 340 |
| MabI | ACCWGGT | 1 cut(s) | 298 |
| MaeI | CTAG | 1 cut(s) | 167 |
| MaeII | ACGT | 5 cut(s) | 107, 115, 146, 192, 327 |
| MaeIII | GTNAC | 3 cut(s) | 21, 147, 291 |
| MalI | GATC | 1 cut(s) | 71 |
| MboI | GATC | 1 cut(s) | 69 |
| MboII | GAAGA | 1 cut(s) | 236 |
| MnlI | CCTC | 3 cut(s) | 32, 168, 322 |
| Mph1103I | ATGCAT | 3 cut(s) | 123, 127, 279 |
| MseI | TTAA | 2 cut(s) | 104, 357 |
| MspR9I | CCNGG | 1 cut(s) | 300 |
| MvaI | CCWGG | 1 cut(s) | 300 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 73, 127, 167, 263, 283 |
| NdeII | GATC | 1 cut(s) | 69 |
| NlaIII | CATG | 3 cut(s) | 13, 125, 129 |
| NlaIV | GGNNCC | 2 cut(s) | 54, 179 |
| NsiI | ATGCAT | 3 cut(s) | 123, 127, 279 |
| NspI | RCATGY | 1 cut(s) | 125 |
| PaeI | GCATGC | 1 cut(s) | 125 |
| PaeR7I | CTCGAG | 2 cut(s) | 156, 287 |
| PkrI | GCNGC | 1 cut(s) | 163 |
| Ppu21I | YACGTR | 1 cut(s) | 116 |
| Psp1406I | AACGTT | 2 cut(s) | 107, 146 |
| Psp6I | CCWGG | 1 cut(s) | 298 |
| PspGI | CCWGG | 1 cut(s) | 298 |
| PspN4I | GGNNCC | 2 cut(s) | 54, 179 |
| PspPI | GGNCC | 2 cut(s) | 178, 388 |
| PspXI | VCTCGAGB | 2 cut(s) | 156, 287 |
| RsaI | GTAC | 2 cut(s) | 114, 377 |
| RsaNI | GTAC | 2 cut(s) | 113, 376 |
| SaqAI | TTAA | 2 cut(s) | 104, 357 |
| SatI | GCNGC | 1 cut(s) | 162 |
| Sau3AI | GATC | 1 cut(s) | 69 |
| Sau96I | GGNCC | 2 cut(s) | 178, 388 |
| ScaI | AGTACT | 1 cut(s) | 377 |
| ScrFI | CCNGG | 1 cut(s) | 300 |
| SexAI | ACCWGGT | 1 cut(s) | 298 |
| SfaNI | GCATC | 4 cut(s) | 55, 244, 264, 340 |
| Sfr274I | CTCGAG | 2 cut(s) | 156, 287 |
| SinI | GGWCC | 1 cut(s) | 178 |
| SlaI | CTCGAG | 2 cut(s) | 156, 287 |
| SmlI | CTYRAG | 3 cut(s) | 156, 259, 287 |
| SmoI | CTYRAG | 3 cut(s) | 156, 259, 287 |
| SnaBI | TACGTA | 1 cut(s) | 116 |
| SphI | GCATGC | 1 cut(s) | 125 |
| SspMI | CTAG | 1 cut(s) | 167 |
| StyD4I | CCNGG | 1 cut(s) | 298 |
| TaaI | ACNGT | 1 cut(s) | 251 |
| TaiI | ACGT | 5 cut(s) | 110, 118, 149, 195, 330 |
| TaqI | TCGA | 2 cut(s) | 157, 288 |
| TatI | WGTACW | 1 cut(s) | 375 |
| Tru1I | TTAA | 2 cut(s) | 104, 357 |
| Tru9I | TTAA | 2 cut(s) | 104, 357 |
| TseI | GCWGC | 1 cut(s) | 161 |
| TspGWI | ACGGA | 1 cut(s) | 40 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XceI | RCATGY | 1 cut(s) | 125 |
| XhoI | CTCGAG | 2 cut(s) | 156, 287 |
| XspI | CTAG | 1 cut(s) | 167 |
| ZrmI | AGTACT | 1 cut(s) | 377 |
| Zsp2I | ATGCAT | 3 cut(s) | 123, 127, 279 |