Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 63 - 127 | 2.3e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 342 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 170, 289, 290 |
| AgsI | TTSAA | 1 cut(s) | 206 |
| AluBI | AGCT | 2 cut(s) | 161, 356 |
| AluI | AGCT | 2 cut(s) | 161, 356 |
| Alw26I | GTCTC | 3 cut(s) | 142, 240, 368 |
| AseI | ATTAAT | 1 cut(s) | 186 |
| AsuHPI | GGTGA | 1 cut(s) | 223 |
| BccI | CCATC | 2 cut(s) | 51, 188 |
| BceAI | ACGGC | 1 cut(s) | 114 |
| BclI | TGATCA | 1 cut(s) | 240 |
| BcoDI | GTCTC | 3 cut(s) | 142, 240, 368 |
| BfmI | CTRYAG | 2 cut(s) | 339, 351 |
| BmiI | GGNNCC | 1 cut(s) | 37 |
| Bpu10I | CCTNAGC | 1 cut(s) | 119 |
| BpuEI | CTTGAG | 1 cut(s) | 342 |
| BsaI | GGTCTC | 2 cut(s) | 142, 368 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 170, 289, 290 |
| Bse1I | ACTGG | 1 cut(s) | 259 |
| BseGI | GGATG | 1 cut(s) | 66 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 170, 289, 290 |
| BseMII | CTCAG | 1 cut(s) | 153 |
| BseNI | ACTGG | 1 cut(s) | 259 |
| BseRI | GAGGAG | 1 cut(s) | 153 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 170, 289, 290 |
| BsmAI | GTCTC | 3 cut(s) | 142, 240, 368 |
| Bso31I | GGTCTC | 2 cut(s) | 142, 368 |
| Bsp143I | GATC | 1 cut(s) | 240 |
| BspCNI | CTCAG | 1 cut(s) | 152 |
| BspHI | TCATGA | 1 cut(s) | 90 |
| BspLI | GGNNCC | 1 cut(s) | 37 |
| BspTNI | GGTCTC | 2 cut(s) | 142, 368 |
| BsrI | ACTGG | 1 cut(s) | 259 |
| BssMI | GATC | 1 cut(s) | 240 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 2 cut(s) | 280, 312 |
| BstDEI | CTNAG | 2 cut(s) | 119, 139 |
| BstF5I | GGATG | 1 cut(s) | 66 |
| BstKTI | GATC | 1 cut(s) | 243 |
| BstMAI | GTCTC | 3 cut(s) | 142, 240, 368 |
| BstMBI | GATC | 1 cut(s) | 240 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 275, 311 |
| BstNSI | RCATGY | 2 cut(s) | 282, 314 |
| BstSFI | CTRYAG | 2 cut(s) | 339, 351 |
| BtsCI | GGATG | 1 cut(s) | 66 |
| Cac8I | GCNNGC | 2 cut(s) | 280, 312 |
| CciI | TCATGA | 1 cut(s) | 90 |
| CviAII | CATG | 3 cut(s) | 91, 279, 311 |
| CviJI | RGCY | 6 cut(s) | 87, 117, 129, 161, 338, 356 |
| CviKI_1 | RGCY | 6 cut(s) | 87, 117, 129, 161, 338, 356 |
| DdeI | CTNAG | 2 cut(s) | 119, 139 |
| DpnI | GATC | 1 cut(s) | 242 |
| DpnII | GATC | 1 cut(s) | 240 |
| Eco31I | GGTCTC | 2 cut(s) | 142, 368 |
| FaeI | CATG | 3 cut(s) | 94, 282, 314 |
| FaiI | YATR | 8 cut(s) | 29, 92, 125, 230, 263, 280, 312, 353 |
| FatI | CATG | 3 cut(s) | 90, 278, 310 |
| FbaI | TGATCA | 1 cut(s) | 240 |
| FblI | GTMKAC | 1 cut(s) | 342 |
| FokI | GGATG | 1 cut(s) | 73 |
| Hin1II | CATG | 3 cut(s) | 94, 282, 314 |
| HphI | GGTGA | 1 cut(s) | 223 |
| Hpy166II | GTNNAC | 1 cut(s) | 343 |
| Hpy188I | TCNGA | 2 cut(s) | 100, 245 |
| Hpy188III | TCNNGA | 2 cut(s) | 33, 91 |
| Hpy8I | GTNNAC | 1 cut(s) | 343 |
| HpyAV | CCTTC | 2 cut(s) | 177, 266 |
| HpyCH4V | TGCA | 1 cut(s) | 269 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 275, 311 |
| HpyF3I | CTNAG | 2 cut(s) | 119, 139 |
| Hsp92II | CATG | 3 cut(s) | 94, 282, 314 |
| Ksp22I | TGATCA | 1 cut(s) | 240 |
| Kzo9I | GATC | 1 cut(s) | 240 |
| LmnI | GCTCC | 3 cut(s) | 4, 166, 275 |
| LpnPI | CCDG | 7 cut(s) | 18, 56, 126, 156, 194, 240, 319 |
| MaeIII | GTNAC | 3 cut(s) | 103, 211, 329 |
| MalI | GATC | 1 cut(s) | 242 |
| MboI | GATC | 1 cut(s) | 240 |
| MboII | GAAGA | 1 cut(s) | 26 |
| MluCI | AATT | 3 cut(s) | 80, 183, 317 |
| MnlI | CCTC | 2 cut(s) | 174, 282 |
| MseI | TTAA | 2 cut(s) | 186, 296 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 275, 311 |
| NdeII | GATC | 1 cut(s) | 240 |
| NlaIII | CATG | 3 cut(s) | 94, 282, 314 |
| NlaIV | GGNNCC | 1 cut(s) | 37 |
| NmuCI | GTSAC | 3 cut(s) | 103, 211, 329 |
| NspI | RCATGY | 2 cut(s) | 282, 314 |
| PaeI | GCATGC | 2 cut(s) | 282, 314 |
| PagI | TCATGA | 1 cut(s) | 90 |
| PshBI | ATTAAT | 1 cut(s) | 186 |
| PspN4I | GGNNCC | 1 cut(s) | 37 |
| SaqAI | TTAA | 2 cut(s) | 186, 296 |
| Sau3AI | GATC | 1 cut(s) | 240 |
| SetI | ASST | 7 cut(s) | 138, 145, 163, 213, 358, 364, 373 |
| SfcI | CTRYAG | 2 cut(s) | 339, 351 |
| SmlI | CTYRAG | 1 cut(s) | 357 |
| SmoI | CTYRAG | 1 cut(s) | 357 |
| SphI | GCATGC | 2 cut(s) | 282, 314 |
| Sse9I | AATT | 3 cut(s) | 80, 183, 317 |
| TasI | AATT | 3 cut(s) | 80, 183, 317 |
| Tru1I | TTAA | 2 cut(s) | 186, 296 |
| Tru9I | TTAA | 2 cut(s) | 186, 296 |
| TseFI | GTSAC | 3 cut(s) | 103, 211, 329 |
| Tsp45I | GTSAC | 3 cut(s) | 103, 211, 329 |
| TspDTI | ATGAA | 2 cut(s) | 79, 364 |
| VspI | ATTAAT | 1 cut(s) | 186 |
| XceI | RCATGY | 2 cut(s) | 282, 314 |
| XmiI | GTMKAC | 1 cut(s) | 342 |