Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 6 - 93 | 3.3e-08 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 28 |
| AccI | GTMKAC | 1 cut(s) | 117 |
| AciI | CCGC | 1 cut(s) | 62 |
| AcyI | GRCGYC | 1 cut(s) | 29 |
| AfaI | GTAC | 1 cut(s) | 175 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 127 |
| AgsI | TTSAA | 2 cut(s) | 71, 110 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 179, 211 |
| AluBI | AGCT | 5 cut(s) | 95, 272, 281, 329, 347 |
| AluI | AGCT | 5 cut(s) | 95, 272, 281, 329, 347 |
| AoxI | GGCC | 1 cut(s) | 45 |
| ApeKI | GCWGC | 1 cut(s) | 347 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 210 |
| AspLEI | GCGC | 1 cut(s) | 31 |
| AsuHPI | GGTGA | 1 cut(s) | 164 |
| AsuNHI | GCTAGC | 2 cut(s) | 91, 268 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 165, 198 |
| BanI | GGYRCC | 1 cut(s) | 28 |
| BbvI | GCAGC | 1 cut(s) | 334 |
| BccI | CCATC | 1 cut(s) | 143 |
| BceAI | ACGGC | 1 cut(s) | 42 |
| BfaI | CTAG | 4 cut(s) | 92, 269, 273, 364 |
| BfmI | CTRYAG | 2 cut(s) | 177, 324 |
| BfoI | RGCGCY | 1 cut(s) | 32 |
| BglII | AGATCT | 1 cut(s) | 292 |
| BisI | GCNGC | 2 cut(s) | 63, 348 |
| BlsI | GCNGC | 2 cut(s) | 64, 349 |
| BmiI | GGNNCC | 1 cut(s) | 30 |
| BmtI | GCTAGC | 2 cut(s) | 95, 272 |
| BsaBI | GATNNNNATC | 1 cut(s) | 297 |
| BsaHI | GRCGYC | 1 cut(s) | 29 |
| BsaJI | CCNNGG | 2 cut(s) | 24, 48 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 127 |
| Bse1I | ACTGG | 1 cut(s) | 132 |
| Bse3DI | GCAATG | 2 cut(s) | 84, 137 |
| Bse8I | GATNNNNATC | 1 cut(s) | 297 |
| BseDI | CCNNGG | 2 cut(s) | 24, 48 |
| BseJI | GATNNNNATC | 1 cut(s) | 297 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BseMI | GCAATG | 2 cut(s) | 84, 137 |
| BseMII | CTCAG | 1 cut(s) | 303 |
| BseNI | ACTGG | 1 cut(s) | 132 |
| BseXI | GCAGC | 1 cut(s) | 334 |
| BshFI | GGCC | 1 cut(s) | 47 |
| BshNI | GGYRCC | 1 cut(s) | 28 |
| BsiSI | CCGG | 1 cut(s) | 32 |
| BslFI | GGGAC | 2 cut(s) | 200, 305 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BsmFI | GGGAC | 2 cut(s) | 200, 305 |
| BsnI | GGCC | 1 cut(s) | 47 |
| Bsp143I | GATC | 4 cut(s) | 39, 157, 292, 298 |
| BspACI | CCGC | 1 cut(s) | 62 |
| BspANI | GGCC | 1 cut(s) | 47 |
| BspCNI | CTCAG | 1 cut(s) | 302 |
| BspLI | GGNNCC | 1 cut(s) | 30 |
| BspOI | GCTAGC | 2 cut(s) | 95, 272 |
| BspT107I | GGYRCC | 1 cut(s) | 28 |
| BsrDI | GCAATG | 2 cut(s) | 84, 137 |
| BsrI | ACTGG | 1 cut(s) | 132 |
| BssECI | CCNNGG | 2 cut(s) | 24, 48 |
| BssMI | GATC | 4 cut(s) | 39, 157, 292, 298 |
| BssNI | GRCGYC | 1 cut(s) | 29 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 181 |
| BstACI | GRCGYC | 1 cut(s) | 29 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 4 cut(s) | 55, 93, 144, 270 |
| BstDEI | CTNAG | 1 cut(s) | 289 |
| BstH2I | RGCGCY | 1 cut(s) | 32 |
| BstHHI | GCGC | 1 cut(s) | 31 |
| BstKTI | GATC | 4 cut(s) | 42, 160, 295, 301 |
| BstMBI | GATC | 4 cut(s) | 39, 157, 292, 298 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 15, 59, 278 |
| BstSFI | CTRYAG | 2 cut(s) | 177, 324 |
| BstV1I | GCAGC | 1 cut(s) | 334 |
| BstX2I | RGATCY | 1 cut(s) | 292 |
| BstYI | RGATCY | 1 cut(s) | 292 |
| BsuRI | GGCC | 1 cut(s) | 47 |
| Cac8I | GCNNGC | 4 cut(s) | 55, 93, 144, 270 |
| CfoI | GCGC | 1 cut(s) | 31 |
| Csp6I | GTAC | 1 cut(s) | 174 |
| CviAII | CATG | 1 cut(s) | 354 |
| CviQI | GTAC | 1 cut(s) | 174 |
| DdeI | CTNAG | 1 cut(s) | 289 |
| DinI | GGCGCC | 1 cut(s) | 30 |
| DpnI | GATC | 4 cut(s) | 41, 159, 294, 300 |
| DpnII | GATC | 4 cut(s) | 39, 157, 292, 298 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| Eco147I | AGGCCT | 1 cut(s) | 47 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| EgeI | GGCGCC | 1 cut(s) | 30 |
| EheI | GGCGCC | 1 cut(s) | 30 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 1 cut(s) | 357 |
| FaiI | YATR | 6 cut(s) | 75, 87, 264, 307, 355, 359 |
| FaqI | GGGAC | 2 cut(s) | 200, 305 |
| FatI | CATG | 1 cut(s) | 353 |
| FblI | GTMKAC | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 348 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 348 |
| FspBI | CTAG | 4 cut(s) | 92, 269, 273, 364 |
| GlaI | GCGC | 1 cut(s) | 30 |
| GluI | GCNGC | 2 cut(s) | 63, 348 |
| HaeII | RGCGCY | 1 cut(s) | 32 |
| HaeIII | GGCC | 1 cut(s) | 47 |
| HapII | CCGG | 1 cut(s) | 32 |
| HhaI | GCGC | 1 cut(s) | 31 |
| Hin1I | GRCGYC | 1 cut(s) | 29 |
| Hin1II | CATG | 1 cut(s) | 357 |
| Hin6I | GCGC | 1 cut(s) | 29 |
| HinP1I | GCGC | 1 cut(s) | 29 |
| HinfI | GANTC | 1 cut(s) | 206 |
| HpaII | CCGG | 1 cut(s) | 32 |
| HphI | GGTGA | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 1 cut(s) | 118 |
| Hpy188I | TCNGA | 1 cut(s) | 292 |
| Hpy188III | TCNNGA | 1 cut(s) | 296 |
| Hpy8I | GTNNAC | 1 cut(s) | 118 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 181 |
| HpyCH4V | TGCA | 2 cut(s) | 9, 77 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 15, 59, 278 |
| HpyF3I | CTNAG | 1 cut(s) | 289 |
| Hsp92I | GRCGYC | 1 cut(s) | 29 |
| Hsp92II | CATG | 1 cut(s) | 357 |
| HspAI | GCGC | 1 cut(s) | 29 |
| KasI | GGCGCC | 1 cut(s) | 28 |
| Kzo9I | GATC | 4 cut(s) | 39, 157, 292, 298 |
| LmnI | GCTCC | 2 cut(s) | 100, 355 |
| LpnPI | CCDG | 5 cut(s) | 45, 111, 113, 150, 336 |
| Lsp1109I | GCAGC | 1 cut(s) | 334 |
| MaeI | CTAG | 4 cut(s) | 92, 269, 273, 364 |
| MaeIII | GTNAC | 1 cut(s) | 236 |
| MalI | GATC | 4 cut(s) | 41, 159, 294, 300 |
| MboI | GATC | 4 cut(s) | 39, 157, 292, 298 |
| MfeI | CAATTG | 1 cut(s) | 12 |
| MflI | RGATCY | 1 cut(s) | 292 |
| MluCI | AATT | 3 cut(s) | 12, 133, 250 |
| Mly113I | GGCGCC | 1 cut(s) | 29 |
| MnlI | CCTC | 4 cut(s) | 19, 37, 209, 238 |
| MroXI | GAANNNNTTC | 1 cut(s) | 210 |
| MseI | TTAA | 2 cut(s) | 123, 132 |
| MspI | CCGG | 1 cut(s) | 32 |
| MunI | CAATTG | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 15, 59, 278 |
| NarI | GGCGCC | 1 cut(s) | 29 |
| NdeII | GATC | 4 cut(s) | 39, 157, 292, 298 |
| NheI | GCTAGC | 2 cut(s) | 91, 268 |
| NlaIII | CATG | 1 cut(s) | 357 |
| NlaIV | GGNNCC | 1 cut(s) | 30 |
| NmeAIII | GCCGAG | 1 cut(s) | 49 |
| PceI | AGGCCT | 1 cut(s) | 47 |
| PdmI | GAANNNNTTC | 1 cut(s) | 210 |
| PfeI | GAWTC | 1 cut(s) | 206 |
| PkrI | GCNGC | 2 cut(s) | 64, 349 |
| PluTI | GGCGCC | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 1 cut(s) | 30 |
| PsuI | RGATCY | 1 cut(s) | 292 |
| RsaI | GTAC | 1 cut(s) | 175 |
| RsaNI | GTAC | 1 cut(s) | 174 |
| SaqAI | TTAA | 2 cut(s) | 123, 132 |
| SatI | GCNGC | 2 cut(s) | 63, 348 |
| Sau3AI | GATC | 4 cut(s) | 39, 157, 292, 298 |
| SetI | ASST | 6 cut(s) | 97, 123, 274, 283, 331, 349 |
| SfcI | CTRYAG | 2 cut(s) | 177, 324 |
| SfoI | GGCGCC | 1 cut(s) | 30 |
| Sse9I | AATT | 3 cut(s) | 12, 133, 250 |
| SseBI | AGGCCT | 1 cut(s) | 47 |
| SsiI | CCGC | 1 cut(s) | 62 |
| SspDI | GGCGCC | 1 cut(s) | 28 |
| SspMI | CTAG | 4 cut(s) | 92, 269, 273, 364 |
| StuI | AGGCCT | 1 cut(s) | 47 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 2 cut(s) | 115, 181 |
| TaqI | TCGA | 2 cut(s) | 42, 297 |
| TasI | AATT | 3 cut(s) | 12, 133, 250 |
| TauI | GCSGC | 1 cut(s) | 65 |
| TfiI | GAWTC | 1 cut(s) | 206 |
| Tru1I | TTAA | 2 cut(s) | 123, 132 |
| Tru9I | TTAA | 2 cut(s) | 123, 132 |
| TseI | GCWGC | 1 cut(s) | 347 |
| TspDTI | ATGAA | 3 cut(s) | 126, 210, 221 |
| XmiI | GTMKAC | 1 cut(s) | 117 |
| XmnI | GAANNNNTTC | 1 cut(s) | 210 |
| XspI | CTAG | 4 cut(s) | 92, 269, 273, 364 |