Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 27 |
| AarI | CACCTGC | 1 cut(s) | 194 |
| Acc36I | ACCTGC | 1 cut(s) | 194 |
| AccIII | TCCGGA | 1 cut(s) | 1083 |
| AciI | CCGC | 2 cut(s) | 169, 458 |
| AclWI | GGATC | 3 cut(s) | 256, 269, 1094 |
| AcsI | RAATTY | 2 cut(s) | 618, 851 |
| AcuI | CTGAAG | 1 cut(s) | 1050 |
| AfaI | GTAC | 3 cut(s) | 210, 636, 813 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 51, 386, 588, 1083 |
| AflII | CTTAAG | 1 cut(s) | 197 |
| AflIII | ACRYGT | 1 cut(s) | 814 |
| AgsI | TTSAA | 3 cut(s) | 563, 601, 931 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 319 |
| AhlI | ACTAGT | 1 cut(s) | 190 |
| AjnI | CCWGG | 1 cut(s) | 1011 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 126, 158 |
| AluBI | AGCT | 6 cut(s) | 437, 641, 666, 787, 953, 1034 |
| AluI | AGCT | 6 cut(s) | 437, 641, 666, 787, 953, 1034 |
| Alw26I | GTCTC | 6 cut(s) | 52, 355, 580, 765, 1043, 1061 |
| AlwI | GGATC | 3 cut(s) | 256, 269, 1094 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 995 |
| Aor13HI | TCCGGA | 1 cut(s) | 1083 |
| AoxI | GGCC | 1 cut(s) | 1014 |
| ApeKI | GCWGC | 3 cut(s) | 404, 721, 1133 |
| ApoI | RAATTY | 2 cut(s) | 618, 851 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 151, 512, 567, 596 |
| AspS9I | GGNCC | 3 cut(s) | 497, 703, 1104 |
| AsuC2I | CCSGG | 1 cut(s) | 428 |
| AsuHPI | GGTGA | 2 cut(s) | 236, 250 |
| AvaII | GGWCC | 3 cut(s) | 497, 703, 1104 |
| BamHI | GGATCC | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 381 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 518, 550 |
| BauI | CACGAG | 1 cut(s) | 546 |
| BbsI | GAAGAC | 1 cut(s) | 533 |
| BbvI | GCAGC | 3 cut(s) | 416, 733, 1120 |
| BccI | CCATC | 4 cut(s) | 221, 390, 742, 917 |
| BciT130I | CCWGG | 1 cut(s) | 1013 |
| BciVI | GTATCC | 1 cut(s) | 76 |
| BclI | TGATCA | 1 cut(s) | 1153 |
| BcnI | CCSGG | 1 cut(s) | 428 |
| BcoDI | GTCTC | 6 cut(s) | 52, 355, 580, 765, 1043, 1061 |
| BcuI | ACTAGT | 1 cut(s) | 190 |
| BfaI | CTAG | 4 cut(s) | 90, 191, 1035, 1101 |
| BfmI | CTRYAG | 3 cut(s) | 402, 719, 882 |
| BfrI | CTTAAG | 1 cut(s) | 197 |
| BfuAI | ACCTGC | 1 cut(s) | 194 |
| BfuI | GTATCC | 1 cut(s) | 76 |
| BisI | GCNGC | 3 cut(s) | 405, 722, 1134 |
| BlpI | GCTNAGC | 1 cut(s) | 438 |
| BlsI | GCNGC | 3 cut(s) | 406, 723, 1135 |
| Bme1390I | CCNGG | 2 cut(s) | 428, 1013 |
| Bme18I | GGWCC | 3 cut(s) | 497, 703, 1104 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 319 |
| BmgT120I | GGNCC | 3 cut(s) | 497, 703, 1104 |
| BmiI | GGNNCC | 3 cut(s) | 232, 263, 498 |
| BmrFI | CCNGG | 2 cut(s) | 428, 1013 |
| BmsI | GCATC | 4 cut(s) | 387, 462, 724, 1046 |
| BoxI | GACNNNNGTC | 1 cut(s) | 801 |
| BpiI | GAAGAC | 1 cut(s) | 533 |
| BpmI | CTGGAG | 2 cut(s) | 631, 995 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 438 |
| BpuEI | CTTGAG | 1 cut(s) | 1004 |
| BpuMI | CCSGG | 1 cut(s) | 428 |
| BsaBI | GATNNNNATC | 1 cut(s) | 914 |
| BsaI | GGTCTC | 3 cut(s) | 355, 765, 1061 |
| BsaJI | CCNNGG | 2 cut(s) | 234, 426 |
| BsaWI | WCCGGW | 1 cut(s) | 1083 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 208, 238, 470, 500 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 51, 386, 588, 1083 |
| Bse1I | ACTGG | 2 cut(s) | 542, 1107 |
| Bse3DI | GCAATG | 3 cut(s) | 42, 710, 999 |
| Bse8I | GATNNNNATC | 1 cut(s) | 914 |
| BseAI | TCCGGA | 1 cut(s) | 1083 |
| BseBI | CCWGG | 1 cut(s) | 1013 |
| BseDI | CCNNGG | 2 cut(s) | 234, 426 |
| BseGI | GGATG | 3 cut(s) | 402, 453, 702 |
| BseJI | GATNNNNATC | 1 cut(s) | 914 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 51, 386, 588, 1083 |
| BseMI | GCAATG | 3 cut(s) | 42, 710, 999 |
| BseMII | CTCAG | 2 cut(s) | 452, 870 |
| BseNI | ACTGG | 2 cut(s) | 542, 1107 |
| BseXI | GCAGC | 3 cut(s) | 416, 733, 1120 |
| BshFI | GGCC | 1 cut(s) | 1016 |
| BsiSI | CCGG | 2 cut(s) | 428, 1084 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 51, 386, 588, 1083 |
| BsmAI | GTCTC | 6 cut(s) | 52, 355, 580, 765, 1043, 1061 |
| BsnI | GGCC | 1 cut(s) | 1016 |
| Bso31I | GGTCTC | 3 cut(s) | 355, 765, 1061 |
| Bsp1286I | GDGCHC | 1 cut(s) | 381 |
| Bsp13I | TCCGGA | 1 cut(s) | 1083 |
| Bsp1407I | TGTACA | 2 cut(s) | 208, 811 |
| Bsp143I | GATC | 4 cut(s) | 261, 1006, 1086, 1153 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 438 |
| BspACI | CCGC | 2 cut(s) | 169, 458 |
| BspANI | GGCC | 1 cut(s) | 1016 |
| BspCNI | CTCAG | 2 cut(s) | 451, 869 |
| BspEI | TCCGGA | 1 cut(s) | 1083 |
| BspLI | GGNNCC | 3 cut(s) | 232, 263, 498 |
| BspMAI | CTGCAG | 2 cut(s) | 406, 723 |
| BspMI | ACCTGC | 1 cut(s) | 194 |
| BspPI | GGATC | 3 cut(s) | 256, 269, 1094 |
| BspTI | CTTAAG | 1 cut(s) | 197 |
| BspTNI | GGTCTC | 3 cut(s) | 355, 765, 1061 |
| BsrDI | GCAATG | 3 cut(s) | 42, 710, 999 |
| BsrGI | TGTACA | 2 cut(s) | 208, 811 |
| BsrI | ACTGG | 2 cut(s) | 542, 1107 |
| BssECI | CCNNGG | 2 cut(s) | 234, 426 |
| BssMI | GATC | 4 cut(s) | 261, 1006, 1086, 1153 |
| BssSI | CACGAG | 1 cut(s) | 546 |
| BssT1I | CCWWGG | 1 cut(s) | 234 |
| Bst2BI | CACGAG | 1 cut(s) | 546 |
| Bst2UI | CCWGG | 1 cut(s) | 1013 |
| Bst4CI | ACNGT | 1 cut(s) | 272 |
| Bst6I | CTCTTC | 1 cut(s) | 583 |
| BstAFI | CTTAAG | 1 cut(s) | 197 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 41, 946 |
| BstAUI | TGTACA | 2 cut(s) | 208, 811 |
| BstC8I | GCNNGC | 5 cut(s) | 42, 297, 402, 668, 951 |
| BstDEI | CTNAG | 3 cut(s) | 31, 438, 856 |
| BstF5I | GGATG | 3 cut(s) | 402, 453, 702 |
| BstKTI | GATC | 4 cut(s) | 264, 1009, 1089, 1156 |
| BstMAI | GTCTC | 6 cut(s) | 52, 355, 580, 765, 1043, 1061 |
| BstMBI | GATC | 4 cut(s) | 261, 1006, 1086, 1153 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 41, 46, 721, 946, 1001, 1139, 1148 |
| BstNI | CCWGG | 1 cut(s) | 1013 |
| BstNSI | RCATGY | 2 cut(s) | 446, 818 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 801 |
| BstSCI | CCNGG | 2 cut(s) | 426, 1011 |
| BstSFI | CTRYAG | 3 cut(s) | 402, 719, 882 |
| BstV1I | GCAGC | 3 cut(s) | 416, 733, 1120 |
| BstV2I | GAAGAC | 1 cut(s) | 533 |
| BstX2I | RGATCY | 1 cut(s) | 261 |
| BstYI | RGATCY | 1 cut(s) | 261 |
| BsuI | GTATCC | 1 cut(s) | 76 |
| BsuRI | GGCC | 1 cut(s) | 1016 |
| BtsCI | GGATG | 3 cut(s) | 402, 453, 702 |
| BtsI | GCAGTG | 1 cut(s) | 996 |
| BtsIMutI | CAGTG | 1 cut(s) | 996 |
| BveI | ACCTGC | 1 cut(s) | 194 |
| Cac8I | GCNNGC | 5 cut(s) | 42, 297, 402, 668, 951 |
| CaiI | CAGNNNCTG | 1 cut(s) | 995 |
| Cfr13I | GGNCC | 3 cut(s) | 497, 703, 1104 |
| Csp6I | GTAC | 3 cut(s) | 209, 635, 812 |
| CviAII | CATG | 6 cut(s) | 165, 443, 707, 815, 941, 1094 |
| CviQI | GTAC | 3 cut(s) | 209, 635, 812 |
| DdeI | CTNAG | 3 cut(s) | 31, 438, 856 |
| DpnI | GATC | 4 cut(s) | 263, 1008, 1088, 1155 |
| DpnII | GATC | 4 cut(s) | 261, 1006, 1086, 1153 |
| DriI | GACNNNNNGTC | 1 cut(s) | 319 |
| Eam1104I | CTCTTC | 1 cut(s) | 583 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 319 |
| EarI | CTCTTC | 1 cut(s) | 583 |
| EciI | GGCGGA | 1 cut(s) | 184 |
| Eco130I | CCWWGG | 1 cut(s) | 234 |
| Eco147I | AGGCCT | 1 cut(s) | 1016 |
| Eco24I | GRGCYC | 1 cut(s) | 381 |
| Eco31I | GGTCTC | 3 cut(s) | 355, 765, 1061 |
| Eco47I | GGWCC | 3 cut(s) | 497, 703, 1104 |
| Eco57I | CTGAAG | 1 cut(s) | 1050 |
| EcoRI | GAATTC | 1 cut(s) | 851 |
| EcoRII | CCWGG | 1 cut(s) | 1011 |
| EcoT14I | CCWWGG | 1 cut(s) | 234 |
| EcoT22I | ATGCAT | 3 cut(s) | 455, 712, 942 |
| EcoT38I | GRGCYC | 1 cut(s) | 381 |
| ErhI | CCWWGG | 1 cut(s) | 234 |
| FaeI | CATG | 6 cut(s) | 168, 446, 710, 818, 944, 1097 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 126, 158, 497, 529 |
| FatI | CATG | 6 cut(s) | 164, 442, 706, 814, 940, 1093 |
| FauI | CCCGC | 1 cut(s) | 465 |
| FauNDI | CATATG | 1 cut(s) | 1144 |
| FbaI | TGATCA | 1 cut(s) | 1153 |
| Fnu4HI | GCNGC | 3 cut(s) | 405, 722, 1134 |
| FokI | GGATG | 3 cut(s) | 409, 440, 709 |
| FriOI | GRGCYC | 1 cut(s) | 381 |
| Fsp4HI | GCNGC | 3 cut(s) | 405, 722, 1134 |
| FspBI | CTAG | 4 cut(s) | 90, 191, 1035, 1101 |
| GluI | GCNGC | 3 cut(s) | 405, 722, 1134 |
| GsuI | CTGGAG | 2 cut(s) | 631, 995 |
| HaeIII | GGCC | 1 cut(s) | 1016 |
| HapII | CCGG | 2 cut(s) | 428, 1084 |
| Hin1II | CATG | 6 cut(s) | 168, 446, 710, 818, 944, 1097 |
| HincII | GTYRAC | 1 cut(s) | 806 |
| HindII | GTYRAC | 1 cut(s) | 806 |
| HindIII | AAGCTT | 2 cut(s) | 664, 785 |
| HinfI | GANTC | 3 cut(s) | 77, 592, 971 |
| HpaII | CCGG | 2 cut(s) | 428, 1084 |
| HphI | GGTGA | 2 cut(s) | 236, 250 |
| Hpy166II | GTNNAC | 2 cut(s) | 209, 806 |
| Hpy188I | TCNGA | 3 cut(s) | 180, 920, 976 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 368, 500, 610, 1084 |
| Hpy8I | GTNNAC | 2 cut(s) | 209, 806 |
| HpyAV | CCTTC | 1 cut(s) | 502 |
| HpyCH4III | ACNGT | 1 cut(s) | 272 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 41, 46, 721, 946, 1001, 1139, 1148 |
| HpyF3I | CTNAG | 3 cut(s) | 31, 438, 856 |
| Hsp92II | CATG | 6 cut(s) | 168, 446, 710, 818, 944, 1097 |
| Kpn2I | TCCGGA | 1 cut(s) | 1083 |
| Ksp22I | TGATCA | 1 cut(s) | 1153 |
| Kzo9I | GATC | 4 cut(s) | 261, 1006, 1086, 1153 |
| LmnI | GCTCC | 1 cut(s) | 646 |
| Lsp1109I | GCAGC | 3 cut(s) | 416, 733, 1120 |
| LweI | GCATC | 4 cut(s) | 387, 462, 724, 1046 |
| MaeI | CTAG | 4 cut(s) | 90, 191, 1035, 1101 |
| MaeIII | GTNAC | 1 cut(s) | 1109 |
| MalI | GATC | 4 cut(s) | 263, 1008, 1088, 1155 |
| MboI | GATC | 4 cut(s) | 261, 1006, 1086, 1153 |
| MboII | GAAGA | 6 cut(s) | 144, 147, 517, 538, 570, 781 |
| MflI | RGATCY | 1 cut(s) | 261 |
| MhlI | GDGCHC | 1 cut(s) | 381 |
| MluCI | AATT | 7 cut(s) | 118, 278, 489, 618, 652, 851, 1060 |
| MlyI | GAGTC | 2 cut(s) | 71, 980 |
| MmeI | TCCRAC | 1 cut(s) | 681 |
| MnlI | CCTC | 9 cut(s) | 210, 356, 462, 472, 592, 889, 898, 979, 1141 |
| Mph1103I | ATGCAT | 3 cut(s) | 455, 712, 942 |
| MroI | TCCGGA | 1 cut(s) | 1083 |
| MroXI | GAANNNNTTC | 4 cut(s) | 151, 512, 567, 596 |
| MseI | TTAA | 6 cut(s) | 9, 198, 284, 488, 651, 827 |
| MspCI | CTTAAG | 1 cut(s) | 197 |
| MspI | CCGG | 2 cut(s) | 428, 1084 |
| MspR9I | CCNGG | 2 cut(s) | 428, 1013 |
| MvaI | CCWGG | 1 cut(s) | 1013 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 41, 46, 721, 946, 1001, 1139, 1148 |
| NciI | CCSGG | 1 cut(s) | 428 |
| NdeI | CATATG | 1 cut(s) | 1144 |
| NdeII | GATC | 4 cut(s) | 261, 1006, 1086, 1153 |
| NlaIII | CATG | 6 cut(s) | 168, 446, 710, 818, 944, 1097 |
| NlaIV | GGNNCC | 3 cut(s) | 232, 263, 498 |
| NsiI | ATGCAT | 3 cut(s) | 455, 712, 942 |
| NspI | RCATGY | 2 cut(s) | 446, 818 |
| PaqCI | CACCTGC | 1 cut(s) | 194 |
| PceI | AGGCCT | 1 cut(s) | 1016 |
| PciI | ACATGT | 1 cut(s) | 814 |
| PdmI | GAANNNNTTC | 4 cut(s) | 151, 512, 567, 596 |
| PfeI | GAWTC | 1 cut(s) | 592 |
| PkrI | GCNGC | 3 cut(s) | 406, 723, 1135 |
| PleI | GAGTC | 2 cut(s) | 71, 979 |
| PpsI | GAGTC | 2 cut(s) | 71, 979 |
| PscI | ACATGT | 1 cut(s) | 814 |
| PshAI | GACNNNNGTC | 1 cut(s) | 801 |
| PsiI | TTATAA | 1 cut(s) | 27 |
| Psp6I | CCWGG | 1 cut(s) | 1011 |
| PspGI | CCWGG | 1 cut(s) | 1011 |
| PspN4I | GGNNCC | 3 cut(s) | 232, 263, 498 |
| PspPI | GGNCC | 3 cut(s) | 497, 703, 1104 |
| PstI | CTGCAG | 2 cut(s) | 406, 723 |
| PstNI | CAGNNNCTG | 1 cut(s) | 995 |
| PsuI | RGATCY | 1 cut(s) | 261 |
| RsaI | GTAC | 3 cut(s) | 210, 636, 813 |
| RsaNI | GTAC | 3 cut(s) | 209, 635, 812 |
| SaqAI | TTAA | 6 cut(s) | 9, 198, 284, 488, 651, 827 |
| SatI | GCNGC | 3 cut(s) | 405, 722, 1134 |
| Sau3AI | GATC | 4 cut(s) | 261, 1006, 1086, 1153 |
| Sau96I | GGNCC | 3 cut(s) | 497, 703, 1104 |
| SchI | GAGTC | 2 cut(s) | 71, 980 |
| ScrFI | CCNGG | 2 cut(s) | 428, 1013 |
| SduI | GDGCHC | 1 cut(s) | 381 |
| SfaNI | GCATC | 4 cut(s) | 387, 462, 724, 1046 |
| SfcI | CTRYAG | 3 cut(s) | 402, 719, 882 |
| SinI | GGWCC | 3 cut(s) | 497, 703, 1104 |
| SmlI | CTYRAG | 2 cut(s) | 197, 983 |
| SmoI | CTYRAG | 2 cut(s) | 197, 983 |
| SpeI | ACTAGT | 1 cut(s) | 190 |
| Sse9I | AATT | 7 cut(s) | 118, 278, 489, 618, 652, 851, 1060 |
| SseBI | AGGCCT | 1 cut(s) | 1016 |
| SsiI | CCGC | 2 cut(s) | 169, 458 |
| SspI | AATATT | 2 cut(s) | 244, 679 |
| SspMI | CTAG | 4 cut(s) | 90, 191, 1035, 1101 |
| StuI | AGGCCT | 1 cut(s) | 1016 |
| StyD4I | CCNGG | 2 cut(s) | 426, 1011 |
| StyI | CCWWGG | 1 cut(s) | 234 |
| TaaI | ACNGT | 1 cut(s) | 272 |
| TaqI | TCGA | 2 cut(s) | 375, 1126 |
| TasI | AATT | 7 cut(s) | 118, 278, 489, 618, 652, 851, 1060 |
| TatI | WGTACW | 2 cut(s) | 208, 811 |
| TfiI | GAWTC | 1 cut(s) | 592 |
| Tru1I | TTAA | 6 cut(s) | 9, 198, 284, 488, 651, 827 |
| Tru9I | TTAA | 6 cut(s) | 9, 198, 284, 488, 651, 827 |
| TscAI | CASTG | 1 cut(s) | 996 |
| TseI | GCWGC | 3 cut(s) | 404, 721, 1133 |
| TspDTI | ATGAA | 3 cut(s) | 401, 822, 864 |
| TspGWI | ACGGA | 1 cut(s) | 917 |
| TspRI | CASTG | 1 cut(s) | 996 |
| Vha464I | CTTAAG | 1 cut(s) | 197 |
| VpaK11BI | GGWCC | 3 cut(s) | 497, 703, 1104 |
| XapI | RAATTY | 2 cut(s) | 618, 851 |
| XceI | RCATGY | 2 cut(s) | 446, 818 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1114 |
| XmnI | GAANNNNTTC | 4 cut(s) | 151, 512, 567, 596 |
| XspI | CTAG | 4 cut(s) | 90, 191, 1035, 1101 |
| Zsp2I | ATGCAT | 3 cut(s) | 455, 712, 942 |