alpha,alpha-trehalose-phosphate synthase UDP-forming
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2121 |
| AatII | GACGTC | 1 cut(s) | 107 |
| Acc36I | ACCTGC | 1 cut(s) | 1456 |
| AccB1I | GGYRCC | 1 cut(s) | 1743 |
| AccBSI | CCGCTC | 1 cut(s) | 652 |
| AciI | CCGC | 2 cut(s) | 652, 2127 |
| AclWI | GGATC | 1 cut(s) | 253 |
| AcsI | RAATTY | 3 cut(s) | 694, 1014, 1033 |
| AcuI | CTGAAG | 5 cut(s) | 273, 297, 667, 840, 1308 |
| AcyI | GRCGYC | 2 cut(s) | 67, 104 |
| AfaI | GTAC | 5 cut(s) | 406, 576, 787, 922, 2033 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 22, 82, 331, 419, 1049, 1141, 1814, 2009, 2158 |
| AflIII | ACRYGT | 1 cut(s) | 1150 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 526 |
| AhlI | ACTAGT | 3 cut(s) | 788, 917, 926 |
| AjiI | CACGTC | 1 cut(s) | 1151 |
| AjnI | CCWGG | 4 cut(s) | 841, 1453, 1878, 1974 |
| Alw26I | GTCTC | 4 cut(s) | 111, 148, 156, 1774 |
| AlwI | GGATC | 1 cut(s) | 253 |
| Ama87I | CYCGRG | 1 cut(s) | 153 |
| AoxI | GGCC | 4 cut(s) | 1064, 1698, 1724, 1971 |
| ApeKI | GCWGC | 4 cut(s) | 179, 1243, 1246, 1603 |
| ApoI | RAATTY | 3 cut(s) | 694, 1014, 1033 |
| AseI | ATTAAT | 1 cut(s) | 1472 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 680 |
| AspLEI | GCGC | 2 cut(s) | 1608, 1878 |
| AspS9I | GGNCC | 5 cut(s) | 631, 1064, 1699, 1750, 1972 |
| AsuC2I | CCSGG | 1 cut(s) | 1748 |
| AsuHPI | GGTGA | 8 cut(s) | 601, 812, 876, 1172, 1232, 1526, 1894, 1979 |
| AvaI | CYCGRG | 1 cut(s) | 153 |
| AvaII | GGWCC | 2 cut(s) | 631, 1750 |
| AxyI | CCTNAGG | 1 cut(s) | 732 |
| BanI | GGYRCC | 1 cut(s) | 1743 |
| BauI | CACGAG | 1 cut(s) | 570 |
| BbsI | GAAGAC | 2 cut(s) | 12, 141 |
| BbvI | GCAGC | 4 cut(s) | 166, 1230, 1233, 1615 |
| BccI | CCATC | 2 cut(s) | 539, 1055 |
| BceAI | ACGGC | 1 cut(s) | 54 |
| BciT130I | CCWGG | 4 cut(s) | 843, 1455, 1880, 1976 |
| BclI | TGATCA | 3 cut(s) | 295, 622, 876 |
| BcnI | CCSGG | 1 cut(s) | 1748 |
| BcoDI | GTCTC | 4 cut(s) | 111, 148, 156, 1774 |
| BcuI | ACTAGT | 3 cut(s) | 788, 917, 926 |
| BfaI | CTAG | 8 cut(s) | 183, 414, 434, 789, 918, 927, 1659, 1841 |
| BfmI | CTRYAG | 3 cut(s) | 1068, 1348, 1906 |
| BfoI | RGCGCY | 2 cut(s) | 1609, 1879 |
| BfuAI | ACCTGC | 1 cut(s) | 1456 |
| BglII | AGATCT | 2 cut(s) | 600, 869 |
| BisI | GCNGC | 5 cut(s) | 180, 653, 1244, 1247, 1604 |
| BlpI | GCTNAGC | 1 cut(s) | 1371 |
| BlsI | GCNGC | 5 cut(s) | 181, 654, 1245, 1248, 1605 |
| BmcAI | AGTACT | 2 cut(s) | 922, 2033 |
| Bme1390I | CCNGG | 5 cut(s) | 843, 1455, 1748, 1880, 1976 |
| Bme18I | GGWCC | 2 cut(s) | 631, 1750 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 526 |
| BmeT110I | CYCGRG | 1 cut(s) | 153 |
| BmgBI | CACGTC | 1 cut(s) | 1151 |
| BmgT120I | GGNCC | 5 cut(s) | 631, 1064, 1699, 1750, 1972 |
| BmiI | GGNNCC | 4 cut(s) | 1745, 1751, 2001, 2020 |
| BmrFI | CCNGG | 5 cut(s) | 843, 1455, 1748, 1880, 1976 |
| BmsI | GCATC | 5 cut(s) | 651, 1304, 1438, 1628, 2094 |
| BpiI | GAAGAC | 2 cut(s) | 12, 141 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 725, 757 |
| BpmI | CTGGAG | 1 cut(s) | 1437 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1371 |
| BpuEI | CTTGAG | 1 cut(s) | 1978 |
| BpuMI | CCSGG | 1 cut(s) | 1748 |
| BsaHI | GRCGYC | 2 cut(s) | 67, 104 |
| BsaJI | CCNNGG | 3 cut(s) | 1394, 1416, 1974 |
| BsaWI | WCCGGW | 1 cut(s) | 1807 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 128, 158 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 22, 82, 331, 419, 1049, 1141, 1814, 2009, 2158 |
| Bse1I | ACTGG | 4 cut(s) | 87, 1609, 1727, 2014 |
| Bse21I | CCTNAGG | 1 cut(s) | 732 |
| Bse3DI | GCAATG | 3 cut(s) | 636, 709, 1896 |
| BseBI | CCWGG | 4 cut(s) | 843, 1455, 1880, 1976 |
| BseDI | CCNNGG | 3 cut(s) | 1394, 1416, 1974 |
| BseGI | GGATG | 7 cut(s) | 12, 666, 1114, 1263, 1319, 1453, 2148 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 22, 82, 331, 419, 1049, 1141, 1814, 2009, 2158 |
| BseMI | GCAATG | 3 cut(s) | 636, 709, 1896 |
| BseMII | CTCAG | 5 cut(s) | 723, 999, 1107, 1127, 2091 |
| BseNI | ACTGG | 4 cut(s) | 87, 1609, 1727, 2014 |
| BseRI | GAGGAG | 1 cut(s) | 1457 |
| BseXI | GCAGC | 4 cut(s) | 166, 1230, 1233, 1615 |
| BsgI | GTGCAG | 2 cut(s) | 286, 2191 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1808 |
| BshFI | GGCC | 4 cut(s) | 1066, 1700, 1726, 1973 |
| BshNI | GGYRCC | 1 cut(s) | 1743 |
| BsiEI | CGRYCG | 1 cut(s) | 1808 |
| BsiHKCI | CYCGRG | 1 cut(s) | 153 |
| BsiSI | CCGG | 2 cut(s) | 1747, 1808 |
| BslFI | GGGAC | 3 cut(s) | 376, 1065, 1763 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 22, 82, 331, 419, 1049, 1141, 1814, 2009, 2158 |
| BsmAI | GTCTC | 4 cut(s) | 111, 148, 156, 1774 |
| BsmBI | CGTCTC | 1 cut(s) | 111 |
| BsmFI | GGGAC | 3 cut(s) | 376, 1065, 1763 |
| BsmI | GAATGC | 3 cut(s) | 346, 737, 1087 |
| BsnI | GGCC | 4 cut(s) | 1066, 1700, 1726, 1973 |
| BsoBI | CYCGRG | 1 cut(s) | 153 |
| Bsp1407I | TGTACA | 1 cut(s) | 574 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1371 |
| BspACI | CCGC | 2 cut(s) | 652, 2127 |
| BspANI | GGCC | 4 cut(s) | 1066, 1700, 1726, 1973 |
| BspCNI | CTCAG | 5 cut(s) | 724, 1000, 1106, 1128, 2090 |
| BspLI | GGNNCC | 4 cut(s) | 1745, 1751, 2001, 2020 |
| BspMI | ACCTGC | 1 cut(s) | 1456 |
| BspPI | GGATC | 1 cut(s) | 253 |
| BspT107I | GGYRCC | 1 cut(s) | 1743 |
| BsrBI | CCGCTC | 1 cut(s) | 652 |
| BsrDI | GCAATG | 3 cut(s) | 636, 709, 1896 |
| BsrGI | TGTACA | 1 cut(s) | 574 |
| BsrI | ACTGG | 4 cut(s) | 87, 1609, 1727, 2014 |
| BssECI | CCNNGG | 3 cut(s) | 1394, 1416, 1974 |
| BssNI | GRCGYC | 2 cut(s) | 67, 104 |
| BssSI | CACGAG | 1 cut(s) | 570 |
| BssT1I | CCWWGG | 1 cut(s) | 1394 |
| Bst2BI | CACGAG | 1 cut(s) | 570 |
| Bst2UI | CCWGG | 4 cut(s) | 843, 1455, 1880, 1976 |
| Bst4CI | ACNGT | 7 cut(s) | 404, 583, 770, 1127, 1945, 2036, 2117 |
| Bst6I | CTCTTC | 1 cut(s) | 686 |
| BstACI | GRCGYC | 2 cut(s) | 67, 104 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 661 |
| BstAUI | TGTACA | 1 cut(s) | 574 |
| BstC8I | GCNNGC | 2 cut(s) | 1698, 1913 |
| BstDEI | CTNAG | 8 cut(s) | 732, 1008, 1093, 1136, 1199, 1302, 1371, 2077 |
| BstDSI | CCRYGG | 1 cut(s) | 1416 |
| BstF5I | GGATG | 7 cut(s) | 12, 666, 1114, 1263, 1319, 1453, 2148 |
| BstH2I | RGCGCY | 2 cut(s) | 1609, 1879 |
| BstHHI | GCGC | 2 cut(s) | 1608, 1878 |
| BstMAI | GTCTC | 4 cut(s) | 111, 148, 156, 1774 |
| BstMCI | CGRYCG | 1 cut(s) | 1808 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 661, 1600, 1873 |
| BstNI | CCWGG | 4 cut(s) | 843, 1455, 1880, 1976 |
| BstSCI | CCNGG | 5 cut(s) | 841, 1453, 1746, 1878, 1974 |
| BstSFI | CTRYAG | 3 cut(s) | 1068, 1348, 1906 |
| BstV1I | GCAGC | 4 cut(s) | 166, 1230, 1233, 1615 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 141 |
| BstX2I | RGATCY | 3 cut(s) | 245, 600, 869 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1863 |
| BstYI | RGATCY | 3 cut(s) | 245, 600, 869 |
| Bsu36I | CCTNAGG | 1 cut(s) | 732 |
| BsuRI | GGCC | 4 cut(s) | 1066, 1700, 1726, 1973 |
| BtgI | CCRYGG | 1 cut(s) | 1416 |
| BtrI | CACGTC | 1 cut(s) | 1151 |
| BtsCI | GGATG | 7 cut(s) | 12, 666, 1114, 1263, 1319, 1453, 2148 |
| BtsI | GCAGTG | 1 cut(s) | 1587 |
| BtsIMutI | CAGTG | 2 cut(s) | 1132, 1587 |
| BveI | ACCTGC | 1 cut(s) | 1456 |
| Cac8I | GCNNGC | 2 cut(s) | 1698, 1913 |
| CfoI | GCGC | 2 cut(s) | 1608, 1878 |
| Cfr13I | GGNCC | 5 cut(s) | 631, 1064, 1699, 1750, 1972 |
| CseI | GACGC | 3 cut(s) | 75, 146, 323 |
| Csp6I | GTAC | 5 cut(s) | 405, 575, 786, 921, 2032 |
| CviAII | CATG | 6 cut(s) | 50, 607, 1030, 1044, 2023, 2051 |
| CviQI | GTAC | 5 cut(s) | 405, 575, 786, 921, 2032 |
| DdeI | CTNAG | 8 cut(s) | 732, 1008, 1093, 1136, 1199, 1302, 1371, 2077 |
| DriI | GACNNNNNGTC | 1 cut(s) | 526 |
| Eam1104I | CTCTTC | 1 cut(s) | 686 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 526 |
| EarI | CTCTTC | 1 cut(s) | 686 |
| EciI | GGCGGA | 1 cut(s) | 2142 |
| Eco130I | CCWWGG | 1 cut(s) | 1394 |
| Eco32I | GATATC | 2 cut(s) | 727, 1587 |
| Eco47I | GGWCC | 2 cut(s) | 631, 1750 |
| Eco57I | CTGAAG | 5 cut(s) | 273, 297, 667, 840, 1308 |
| Eco81I | CCTNAGG | 1 cut(s) | 732 |
| Eco88I | CYCGRG | 1 cut(s) | 153 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1750 |
| EcoRI | GAATTC | 1 cut(s) | 1014 |
| EcoRII | CCWGG | 4 cut(s) | 841, 1453, 1878, 1974 |
| EcoRV | GATATC | 2 cut(s) | 727, 1587 |
| EcoT14I | CCWWGG | 1 cut(s) | 1394 |
| ErhI | CCWWGG | 1 cut(s) | 1394 |
| Esp3I | CGTCTC | 1 cut(s) | 111 |
| FaeI | CATG | 6 cut(s) | 53, 610, 1033, 1047, 2026, 2054 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 806, 838 |
| FaqI | GGGAC | 3 cut(s) | 376, 1065, 1763 |
| FatI | CATG | 6 cut(s) | 49, 606, 1029, 1043, 2022, 2050 |
| FbaI | TGATCA | 3 cut(s) | 295, 622, 876 |
| Fnu4HI | GCNGC | 5 cut(s) | 180, 653, 1244, 1247, 1604 |
| FokI | GGATG | 6 cut(s) | 673, 1121, 1270, 1326, 1460, 2135 |
| Fsp4HI | GCNGC | 5 cut(s) | 180, 653, 1244, 1247, 1604 |
| FspBI | CTAG | 8 cut(s) | 183, 414, 434, 789, 918, 927, 1659, 1841 |
| GlaI | GCGC | 2 cut(s) | 1607, 1877 |
| GluI | GCNGC | 5 cut(s) | 180, 653, 1244, 1247, 1604 |
| GsuI | CTGGAG | 1 cut(s) | 1437 |
| HaeII | RGCGCY | 2 cut(s) | 1609, 1879 |
| HaeIII | GGCC | 4 cut(s) | 1066, 1700, 1726, 1973 |
| HapII | CCGG | 2 cut(s) | 1747, 1808 |
| HgaI | GACGC | 3 cut(s) | 75, 146, 323 |
| HhaI | GCGC | 2 cut(s) | 1608, 1878 |
| Hin1I | GRCGYC | 2 cut(s) | 67, 104 |
| Hin1II | CATG | 6 cut(s) | 53, 610, 1033, 1047, 2026, 2054 |
| Hin6I | GCGC | 2 cut(s) | 1606, 1876 |
| HinP1I | GCGC | 2 cut(s) | 1606, 1876 |
| HindIII | AAGCTT | 4 cut(s) | 1505, 1533, 1592, 1895 |
| HpaII | CCGG | 2 cut(s) | 1747, 1808 |
| HphI | GGTGA | 8 cut(s) | 601, 812, 876, 1172, 1232, 1526, 1894, 1979 |
| Hpy166II | GTNNAC | 3 cut(s) | 305, 575, 884 |
| Hpy188III | TCNNGA | 7 cut(s) | 153, 155, 224, 629, 773, 1135, 1522 |
| Hpy8I | GTNNAC | 3 cut(s) | 305, 575, 884 |
| Hpy99I | CGWCG | 2 cut(s) | 69, 106 |
| HpyAV | CCTTC | 5 cut(s) | 1344, 1639, 1763, 1958, 2152 |
| HpyCH4III | ACNGT | 7 cut(s) | 404, 583, 770, 1127, 1945, 2036, 2117 |
| HpyCH4IV | ACGT | 2 cut(s) | 104, 1150 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 661, 1600, 1873 |
| HpyF3I | CTNAG | 8 cut(s) | 732, 1008, 1093, 1136, 1199, 1302, 1371, 2077 |
| HpySE526I | ACGT | 2 cut(s) | 104, 1150 |
| Hsp92I | GRCGYC | 2 cut(s) | 67, 104 |
| Hsp92II | CATG | 6 cut(s) | 53, 610, 1033, 1047, 2026, 2054 |
| HspAI | GCGC | 2 cut(s) | 1606, 1876 |
| Ksp22I | TGATCA | 3 cut(s) | 295, 622, 876 |
| LmnI | GCTCC | 3 cut(s) | 706, 1456, 1633 |
| Lsp1109I | GCAGC | 4 cut(s) | 166, 1230, 1233, 1615 |
| LweI | GCATC | 5 cut(s) | 651, 1304, 1438, 1628, 2094 |
| MaeI | CTAG | 8 cut(s) | 183, 414, 434, 789, 918, 927, 1659, 1841 |
| MaeII | ACGT | 2 cut(s) | 104, 1150 |
| MbiI | CCGCTC | 1 cut(s) | 652 |
| MfeI | CAATTG | 1 cut(s) | 1857 |
| MflI | RGATCY | 3 cut(s) | 245, 600, 869 |
| MlyI | GAGTC | 6 cut(s) | 158, 347, 1147, 1452, 1553, 1658 |
| MmeI | TCCRAC | 3 cut(s) | 669, 1927, 2181 |
| MnlI | CCTC | 8 cut(s) | 236, 727, 776, 1102, 1435, 1438, 1647, 1963 |
| MroXI | GAANNNNTTC | 1 cut(s) | 680 |
| MseI | TTAA | 9 cut(s) | 126, 504, 585, 1037, 1173, 1323, 1428, 1472, 1620 |
| MspA1I | CMGCKG | 1 cut(s) | 1905 |
| MspI | CCGG | 2 cut(s) | 1747, 1808 |
| MspR9I | CCNGG | 5 cut(s) | 843, 1455, 1748, 1880, 1976 |
| MunI | CAATTG | 1 cut(s) | 1857 |
| Mva1269I | GAATGC | 3 cut(s) | 346, 737, 1087 |
| MvaI | CCWGG | 4 cut(s) | 843, 1455, 1880, 1976 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 661, 1600, 1873 |
| NciI | CCSGG | 1 cut(s) | 1748 |
| NlaIII | CATG | 6 cut(s) | 53, 610, 1033, 1047, 2026, 2054 |
| NlaIV | GGNNCC | 4 cut(s) | 1745, 1751, 2001, 2020 |
| NmuCI | GTSAC | 7 cut(s) | 350, 989, 1127, 1160, 1220, 1272, 1882 |
| PaeR7I | CTCGAG | 1 cut(s) | 153 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 144, 1649 |
| PctI | GAATGC | 3 cut(s) | 346, 737, 1087 |
| PdmI | GAANNNNTTC | 1 cut(s) | 680 |
| PfeI | GAWTC | 6 cut(s) | 32, 806, 1261, 1364, 1421, 1847 |
| PflFI | GACNNNGTC | 1 cut(s) | 140 |
| PfoI | TCCNGGA | 2 cut(s) | 841, 1453 |
| PkrI | GCNGC | 5 cut(s) | 181, 654, 1245, 1248, 1605 |
| PleI | GAGTC | 6 cut(s) | 157, 347, 1146, 1452, 1552, 1657 |
| PpsI | GAGTC | 6 cut(s) | 157, 347, 1146, 1452, 1552, 1657 |
| PpuMI | RGGWCCY | 1 cut(s) | 1750 |
| PshBI | ATTAAT | 1 cut(s) | 1472 |
| PsiI | TTATAA | 1 cut(s) | 2121 |
| Psp5II | RGGWCCY | 1 cut(s) | 1750 |
| Psp6I | CCWGG | 4 cut(s) | 841, 1453, 1878, 1974 |
| PspGI | CCWGG | 4 cut(s) | 841, 1453, 1878, 1974 |
| PspN4I | GGNNCC | 4 cut(s) | 1745, 1751, 2001, 2020 |
| PspPI | GGNCC | 5 cut(s) | 631, 1064, 1699, 1750, 1972 |
| PspPPI | RGGWCCY | 1 cut(s) | 1750 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2122, 2154 |
| PsuI | RGATCY | 3 cut(s) | 245, 600, 869 |
| PsyI | GACNNNGTC | 1 cut(s) | 140 |
| PvuII | CAGCTG | 1 cut(s) | 1905 |
| RsaI | GTAC | 5 cut(s) | 406, 576, 787, 922, 2033 |
| RsaNI | GTAC | 5 cut(s) | 405, 575, 786, 921, 2032 |
| SaqAI | TTAA | 9 cut(s) | 126, 504, 585, 1037, 1173, 1323, 1428, 1472, 1620 |
| SatI | GCNGC | 5 cut(s) | 180, 653, 1244, 1247, 1604 |
| Sau96I | GGNCC | 5 cut(s) | 631, 1064, 1699, 1750, 1972 |
| ScaI | AGTACT | 2 cut(s) | 922, 2033 |
| SchI | GAGTC | 6 cut(s) | 158, 347, 1147, 1452, 1553, 1658 |
| ScrFI | CCNGG | 5 cut(s) | 843, 1455, 1748, 1880, 1976 |
| SfaNI | GCATC | 5 cut(s) | 651, 1304, 1438, 1628, 2094 |
| SfcI | CTRYAG | 3 cut(s) | 1068, 1348, 1906 |
| Sfr274I | CTCGAG | 1 cut(s) | 153 |
| SinI | GGWCC | 2 cut(s) | 631, 1750 |
| SlaI | CTCGAG | 1 cut(s) | 153 |
| SmlI | CTYRAG | 2 cut(s) | 153, 1957 |
| SmoI | CTYRAG | 2 cut(s) | 153, 1957 |
| SpeI | ACTAGT | 3 cut(s) | 788, 917, 926 |
| SsiI | CCGC | 2 cut(s) | 652, 2127 |
| SspMI | CTAG | 8 cut(s) | 183, 414, 434, 789, 918, 927, 1659, 1841 |
| StyD4I | CCNGG | 5 cut(s) | 841, 1453, 1746, 1878, 1974 |
| StyI | CCWWGG | 1 cut(s) | 1394 |
| TaaI | ACNGT | 7 cut(s) | 404, 583, 770, 1127, 1945, 2036, 2117 |
| TaiI | ACGT | 2 cut(s) | 107, 1153 |
| TaqI | TCGA | 3 cut(s) | 154, 1521, 1652 |
| TatI | WGTACW | 4 cut(s) | 404, 574, 920, 2031 |
| TauI | GCSGC | 1 cut(s) | 655 |
| TfiI | GAWTC | 6 cut(s) | 32, 806, 1261, 1364, 1421, 1847 |
| Tru1I | TTAA | 9 cut(s) | 126, 504, 585, 1037, 1173, 1323, 1428, 1472, 1620 |
| Tru9I | TTAA | 9 cut(s) | 126, 504, 585, 1037, 1173, 1323, 1428, 1472, 1620 |
| TscAI | CASTG | 2 cut(s) | 1132, 1587 |
| TseFI | GTSAC | 7 cut(s) | 350, 989, 1127, 1160, 1220, 1272, 1882 |
| TseI | GCWGC | 4 cut(s) | 179, 1243, 1246, 1603 |
| Tsp45I | GTSAC | 7 cut(s) | 350, 989, 1127, 1160, 1220, 1272, 1882 |
| TspGWI | ACGGA | 3 cut(s) | 45, 252, 1433 |
| TspRI | CASTG | 2 cut(s) | 1132, 1587 |
| Tth111I | GACNNNGTC | 1 cut(s) | 140 |
| VpaK11BI | GGWCC | 2 cut(s) | 631, 1750 |
| VspI | ATTAAT | 1 cut(s) | 1472 |
| XapI | RAATTY | 3 cut(s) | 694, 1014, 1033 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2011 |
| XhoI | CTCGAG | 1 cut(s) | 153 |
| XmnI | GAANNNNTTC | 1 cut(s) | 680 |
| XspI | CTAG | 8 cut(s) | 183, 414, 434, 789, 918, 927, 1659, 1841 |
| ZraI | GACGTC | 1 cut(s) | 105 |
| ZrmI | AGTACT | 2 cut(s) | 922, 2033 |