Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Agenet | PF05641 | 100 - 174 | 2.5e-08 | Agenet domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 243 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 892 |
| AccI | GTMKAC | 2 cut(s) | 1092, 1239 |
| AccII | CGCG | 1 cut(s) | 339 |
| AciI | CCGC | 3 cut(s) | 19, 339, 786 |
| AclWI | GGATC | 1 cut(s) | 68 |
| AcsI | RAATTY | 2 cut(s) | 1300, 1430 |
| AcyI | GRCGYC | 3 cut(s) | 57, 240, 826 |
| AfaI | GTAC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 38, 141, 707, 771, 892, 947, 1406 |
| AgsI | TTSAA | 6 cut(s) | 292, 722, 1038, 1185, 1199, 1305 |
| AjiI | CACGTC | 2 cut(s) | 199, 698 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1367, 1399 |
| AluBI | AGCT | 8 cut(s) | 125, 185, 193, 876, 920, 965, 1280, 1328 |
| AluI | AGCT | 8 cut(s) | 125, 185, 193, 876, 920, 965, 1280, 1328 |
| Alw21I | GWGCWC | 1 cut(s) | 838 |
| Alw26I | GTCTC | 2 cut(s) | 722, 780 |
| AlwI | GGATC | 1 cut(s) | 68 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1031 |
| Ama87I | CYCGRG | 1 cut(s) | 837 |
| AoxI | GGCC | 3 cut(s) | 7, 270, 545 |
| ApeKI | GCWGC | 3 cut(s) | 21, 965, 1328 |
| ApoI | RAATTY | 2 cut(s) | 1300, 1430 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 968, 1000 |
| AspS9I | GGNCC | 3 cut(s) | 7, 41, 883 |
| AsuC2I | CCSGG | 2 cut(s) | 119, 179 |
| AsuHPI | GGTGA | 2 cut(s) | 722, 908 |
| AvaI | CYCGRG | 1 cut(s) | 837 |
| AvaII | GGWCC | 2 cut(s) | 41, 883 |
| BanII | GRGCYC | 1 cut(s) | 233 |
| BbsI | GAAGAC | 2 cut(s) | 309, 1293 |
| Bbv12I | GWGCWC | 1 cut(s) | 838 |
| BbvI | GCAGC | 3 cut(s) | 8, 952, 1315 |
| BccI | CCATC | 5 cut(s) | 68, 262, 874, 893, 1169 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 740, 774 |
| BcnI | CCSGG | 2 cut(s) | 119, 179 |
| BcoDI | GTCTC | 2 cut(s) | 722, 780 |
| BfaI | CTAG | 2 cut(s) | 779, 1086 |
| BfmI | CTRYAG | 1 cut(s) | 966 |
| BisI | GCNGC | 4 cut(s) | 19, 22, 966, 1329 |
| BlsI | GCNGC | 4 cut(s) | 20, 23, 967, 1330 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 179 |
| Bme18I | GGWCC | 2 cut(s) | 41, 883 |
| BmeT110I | CYCGRG | 1 cut(s) | 837 |
| BmgBI | CACGTC | 2 cut(s) | 199, 698 |
| BmgT120I | GGNCC | 3 cut(s) | 7, 41, 883 |
| BmiI | GGNNCC | 1 cut(s) | 350 |
| BmrFI | CCNGG | 2 cut(s) | 119, 179 |
| BmsI | GCATC | 7 cut(s) | 495, 770, 1045, 1067, 1192, 1214, 1404 |
| BpiI | GAAGAC | 2 cut(s) | 309, 1293 |
| BpmI | CTGGAG | 1 cut(s) | 397 |
| BpuMI | CCSGG | 2 cut(s) | 119, 179 |
| BsaHI | GRCGYC | 3 cut(s) | 57, 240, 826 |
| BsaI | GGTCTC | 2 cut(s) | 722, 780 |
| BsaJI | CCNNGG | 1 cut(s) | 807 |
| BsaWI | WCCGGW | 1 cut(s) | 1359 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 370, 400, 597, 627 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 38, 141, 707, 771, 892, 947, 1406 |
| Bse118I | RCCGGY | 1 cut(s) | 156 |
| Bse1I | ACTGG | 2 cut(s) | 227, 1411 |
| Bse3DI | GCAATG | 1 cut(s) | 867 |
| BseDI | CCNNGG | 1 cut(s) | 807 |
| BseGI | GGATG | 8 cut(s) | 58, 60, 634, 676, 761, 803, 916, 1377 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 38, 141, 707, 771, 892, 947, 1406 |
| BseMI | GCAATG | 1 cut(s) | 867 |
| BseMII | CTCAG | 2 cut(s) | 183, 1185 |
| BseNI | ACTGG | 2 cut(s) | 227, 1411 |
| BseXI | GCAGC | 3 cut(s) | 8, 952, 1315 |
| BsgI | GTGCAG | 1 cut(s) | 1314 |
| Bsh1236I | CGCG | 1 cut(s) | 339 |
| BshFI | GGCC | 3 cut(s) | 9, 272, 547 |
| BsiHKAI | GWGCWC | 1 cut(s) | 838 |
| BsiHKCI | CYCGRG | 1 cut(s) | 837 |
| BsiSI | CCGG | 5 cut(s) | 118, 135, 157, 178, 1360 |
| BslFI | GGGAC | 2 cut(s) | 14, 878 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 38, 141, 707, 771, 892, 947, 1406 |
| BsmAI | GTCTC | 2 cut(s) | 722, 780 |
| BsmFI | GGGAC | 2 cut(s) | 14, 878 |
| BsnI | GGCC | 3 cut(s) | 9, 272, 547 |
| Bso31I | GGTCTC | 2 cut(s) | 722, 780 |
| BsoBI | CYCGRG | 1 cut(s) | 837 |
| Bsp1286I | GDGCHC | 2 cut(s) | 233, 838 |
| Bsp143I | GATC | 2 cut(s) | 73, 1441 |
| BspACI | CCGC | 3 cut(s) | 19, 339, 786 |
| BspANI | GGCC | 3 cut(s) | 9, 272, 547 |
| BspCNI | CTCAG | 2 cut(s) | 182, 1184 |
| BspFNI | CGCG | 1 cut(s) | 339 |
| BspHI | TCATGA | 1 cut(s) | 1282 |
| BspLI | GGNNCC | 1 cut(s) | 350 |
| BspMAI | CTGCAG | 1 cut(s) | 970 |
| BspPI | GGATC | 1 cut(s) | 68 |
| BspTNI | GGTCTC | 2 cut(s) | 722, 780 |
| BsrDI | GCAATG | 1 cut(s) | 867 |
| BsrFI | RCCGGY | 1 cut(s) | 156 |
| BsrI | ACTGG | 2 cut(s) | 227, 1411 |
| BssAI | RCCGGY | 1 cut(s) | 156 |
| BssECI | CCNNGG | 1 cut(s) | 807 |
| BssMI | GATC | 2 cut(s) | 73, 1441 |
| BssNI | GRCGYC | 3 cut(s) | 57, 240, 826 |
| BssT1I | CCWWGG | 1 cut(s) | 807 |
| Bst4CI | ACNGT | 4 cut(s) | 37, 393, 796, 1033 |
| BstACI | GRCGYC | 3 cut(s) | 57, 240, 826 |
| BstC8I | GCNNGC | 2 cut(s) | 759, 874 |
| BstDEI | CTNAG | 3 cut(s) | 169, 1171, 1257 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 945 |
| BstF5I | GGATG | 8 cut(s) | 58, 60, 634, 676, 761, 803, 916, 1377 |
| BstFNI | CGCG | 1 cut(s) | 339 |
| BstKTI | GATC | 2 cut(s) | 76, 1444 |
| BstMAI | GTCTC | 2 cut(s) | 722, 780 |
| BstMBI | GATC | 2 cut(s) | 73, 1441 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 15, 131, 223 |
| BstNSI | RCATGY | 2 cut(s) | 1049, 1196 |
| BstSCI | CCNGG | 2 cut(s) | 117, 177 |
| BstSFI | CTRYAG | 1 cut(s) | 966 |
| BstUI | CGCG | 1 cut(s) | 339 |
| BstV1I | GCAGC | 3 cut(s) | 8, 952, 1315 |
| BstV2I | GAAGAC | 2 cut(s) | 309, 1293 |
| BsuRI | GGCC | 3 cut(s) | 9, 272, 547 |
| BtgZI | GCGATG | 1 cut(s) | 1427 |
| BtrI | CACGTC | 2 cut(s) | 199, 698 |
| BtsCI | GGATG | 8 cut(s) | 58, 60, 634, 676, 761, 803, 916, 1377 |
| BtsI | GCAGTG | 1 cut(s) | 13 |
| BtsIMutI | CAGTG | 4 cut(s) | 13, 220, 592, 801 |
| Cac8I | GCNNGC | 2 cut(s) | 759, 874 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1031 |
| CciI | TCATGA | 1 cut(s) | 1282 |
| Cfr10I | RCCGGY | 1 cut(s) | 156 |
| Cfr13I | GGNCC | 3 cut(s) | 7, 41, 883 |
| CseI | GACGC | 3 cut(s) | 65, 497, 815 |
| Csp6I | GTAC | 1 cut(s) | 165 |
| CviAII | CATG | 5 cut(s) | 396, 1046, 1136, 1193, 1283 |
| CviQI | GTAC | 1 cut(s) | 165 |
| DdeI | CTNAG | 3 cut(s) | 169, 1171, 1257 |
| DpnI | GATC | 2 cut(s) | 75, 1443 |
| DpnII | GATC | 2 cut(s) | 73, 1441 |
| Eco130I | CCWWGG | 1 cut(s) | 807 |
| Eco147I | AGGCCT | 1 cut(s) | 547 |
| Eco24I | GRGCYC | 1 cut(s) | 233 |
| Eco31I | GGTCTC | 2 cut(s) | 722, 780 |
| Eco47I | GGWCC | 2 cut(s) | 41, 883 |
| Eco88I | CYCGRG | 1 cut(s) | 837 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 945 |
| EcoT14I | CCWWGG | 1 cut(s) | 807 |
| EcoT22I | ATGCAT | 2 cut(s) | 1060, 1207 |
| EcoT38I | GRGCYC | 1 cut(s) | 233 |
| ErhI | CCWWGG | 1 cut(s) | 807 |
| FaeI | CATG | 5 cut(s) | 399, 1049, 1139, 1196, 1286 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1317, 1349, 1367, 1399 |
| FaqI | GGGAC | 2 cut(s) | 14, 878 |
| FatI | CATG | 5 cut(s) | 395, 1045, 1135, 1192, 1282 |
| FblI | GTMKAC | 2 cut(s) | 1092, 1239 |
| Fnu4HI | GCNGC | 4 cut(s) | 19, 22, 966, 1329 |
| FokI | GGATG | 8 cut(s) | 47, 65, 641, 683, 748, 790, 923, 1384 |
| FriOI | GRGCYC | 1 cut(s) | 233 |
| Fsp4HI | GCNGC | 4 cut(s) | 19, 22, 966, 1329 |
| FspBI | CTAG | 2 cut(s) | 779, 1086 |
| GluI | GCNGC | 4 cut(s) | 19, 22, 966, 1329 |
| GsuI | CTGGAG | 1 cut(s) | 397 |
| HaeIII | GGCC | 3 cut(s) | 9, 272, 547 |
| HapII | CCGG | 5 cut(s) | 118, 135, 157, 178, 1360 |
| HgaI | GACGC | 3 cut(s) | 65, 497, 815 |
| Hin1I | GRCGYC | 3 cut(s) | 57, 240, 826 |
| Hin1II | CATG | 5 cut(s) | 399, 1049, 1139, 1196, 1286 |
| HincII | GTYRAC | 1 cut(s) | 389 |
| HindII | GTYRAC | 1 cut(s) | 389 |
| HindIII | AAGCTT | 1 cut(s) | 874 |
| HinfI | GANTC | 3 cut(s) | 138, 204, 983 |
| HpaII | CCGG | 5 cut(s) | 118, 135, 157, 178, 1360 |
| HphI | GGTGA | 2 cut(s) | 722, 908 |
| Hpy166II | GTNNAC | 5 cut(s) | 389, 1093, 1240, 1357, 1455 |
| Hpy188III | TCNNGA | 5 cut(s) | 422, 595, 645, 779, 1283 |
| Hpy8I | GTNNAC | 5 cut(s) | 389, 1093, 1240, 1357, 1455 |
| Hpy99I | CGWCG | 3 cut(s) | 41, 203, 242 |
| HpyAV | CCTTC | 7 cut(s) | 592, 619, 707, 716, 776, 1369, 1410 |
| HpyCH4III | ACNGT | 4 cut(s) | 37, 393, 796, 1033 |
| HpyCH4IV | ACGT | 3 cut(s) | 198, 240, 697 |
| HpyCH4V | TGCA | 9 cut(s) | 747, 761, 872, 968, 1045, 1058, 1192, 1205, 1331 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 15, 131, 223 |
| HpyF3I | CTNAG | 3 cut(s) | 169, 1171, 1257 |
| HpySE526I | ACGT | 3 cut(s) | 198, 240, 697 |
| Hsp92I | GRCGYC | 3 cut(s) | 57, 240, 826 |
| Hsp92II | CATG | 5 cut(s) | 399, 1049, 1139, 1196, 1286 |
| Kzo9I | GATC | 2 cut(s) | 73, 1441 |
| LmnI | GCTCC | 2 cut(s) | 190, 198 |
| Lsp1109I | GCAGC | 3 cut(s) | 8, 952, 1315 |
| LweI | GCATC | 7 cut(s) | 495, 770, 1045, 1067, 1192, 1214, 1404 |
| MaeI | CTAG | 2 cut(s) | 779, 1086 |
| MaeII | ACGT | 3 cut(s) | 198, 240, 697 |
| MalI | GATC | 2 cut(s) | 75, 1443 |
| MboI | GATC | 2 cut(s) | 73, 1441 |
| MboII | GAAGA | 5 cut(s) | 314, 505, 1171, 1211, 1298 |
| MhlI | GDGCHC | 2 cut(s) | 233, 838 |
| MluCI | AATT | 6 cut(s) | 769, 843, 1040, 1187, 1300, 1430 |
| MlyI | GAGTC | 1 cut(s) | 992 |
| MmeI | TCCRAC | 5 cut(s) | 19, 88, 181, 770, 1406 |
| Mph1103I | ATGCAT | 2 cut(s) | 1060, 1207 |
| MseI | TTAA | 7 cut(s) | 681, 846, 944, 1050, 1118, 1298, 1365 |
| MspA1I | CMGCKG | 2 cut(s) | 21, 965 |
| MspI | CCGG | 5 cut(s) | 118, 135, 157, 178, 1360 |
| MspR9I | CCNGG | 2 cut(s) | 119, 179 |
| MvnI | CGCG | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 15, 131, 223 |
| NciI | CCSGG | 2 cut(s) | 119, 179 |
| NdeII | GATC | 2 cut(s) | 73, 1441 |
| NlaIII | CATG | 5 cut(s) | 399, 1049, 1139, 1196, 1286 |
| NlaIV | GGNNCC | 1 cut(s) | 350 |
| NsiI | ATGCAT | 2 cut(s) | 1060, 1207 |
| NspI | RCATGY | 2 cut(s) | 1049, 1196 |
| PaeR7I | CTCGAG | 1 cut(s) | 837 |
| PagI | TCATGA | 1 cut(s) | 1282 |
| PceI | AGGCCT | 1 cut(s) | 547 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1409 |
| PfeI | GAWTC | 2 cut(s) | 138, 204 |
| PflFI | GACNNNGTC | 1 cut(s) | 239 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 892 |
| PfoI | TCCNGGA | 2 cut(s) | 117, 177 |
| PkrI | GCNGC | 4 cut(s) | 20, 23, 967, 1330 |
| PleI | GAGTC | 1 cut(s) | 991 |
| PpsI | GAGTC | 1 cut(s) | 991 |
| PspN4I | GGNNCC | 1 cut(s) | 350 |
| PspPI | GGNCC | 3 cut(s) | 7, 41, 883 |
| PspXI | VCTCGAGB | 1 cut(s) | 837 |
| PstI | CTGCAG | 1 cut(s) | 970 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1031 |
| PsyI | GACNNNGTC | 1 cut(s) | 239 |
| PvuII | CAGCTG | 1 cut(s) | 965 |
| RsaI | GTAC | 1 cut(s) | 166 |
| RsaNI | GTAC | 1 cut(s) | 165 |
| SaqAI | TTAA | 7 cut(s) | 681, 846, 944, 1050, 1118, 1298, 1365 |
| SatI | GCNGC | 4 cut(s) | 19, 22, 966, 1329 |
| Sau3AI | GATC | 2 cut(s) | 73, 1441 |
| Sau96I | GGNCC | 3 cut(s) | 7, 41, 883 |
| SchI | GAGTC | 1 cut(s) | 992 |
| ScrFI | CCNGG | 2 cut(s) | 119, 179 |
| SduI | GDGCHC | 2 cut(s) | 233, 838 |
| SfaNI | GCATC | 7 cut(s) | 495, 770, 1045, 1067, 1192, 1214, 1404 |
| SfcI | CTRYAG | 1 cut(s) | 966 |
| Sfr274I | CTCGAG | 1 cut(s) | 837 |
| SinI | GGWCC | 2 cut(s) | 41, 883 |
| SlaI | CTCGAG | 1 cut(s) | 837 |
| SmlI | CTYRAG | 1 cut(s) | 837 |
| SmoI | CTYRAG | 1 cut(s) | 837 |
| Sse9I | AATT | 6 cut(s) | 769, 843, 1040, 1187, 1300, 1430 |
| SseBI | AGGCCT | 1 cut(s) | 547 |
| SsiI | CCGC | 3 cut(s) | 19, 339, 786 |
| SspMI | CTAG | 2 cut(s) | 779, 1086 |
| StuI | AGGCCT | 1 cut(s) | 547 |
| StyD4I | CCNGG | 2 cut(s) | 117, 177 |
| StyI | CCWWGG | 1 cut(s) | 807 |
| TaaI | ACNGT | 4 cut(s) | 37, 393, 796, 1033 |
| TaiI | ACGT | 3 cut(s) | 201, 243, 700 |
| TaqI | TCGA | 2 cut(s) | 838, 1403 |
| TasI | AATT | 6 cut(s) | 769, 843, 1040, 1187, 1300, 1430 |
| TauI | GCSGC | 1 cut(s) | 21 |
| TfiI | GAWTC | 2 cut(s) | 138, 204 |
| Tru1I | TTAA | 7 cut(s) | 681, 846, 944, 1050, 1118, 1298, 1365 |
| Tru9I | TTAA | 7 cut(s) | 681, 846, 944, 1050, 1118, 1298, 1365 |
| TscAI | CASTG | 4 cut(s) | 20, 227, 592, 801 |
| TseI | GCWGC | 3 cut(s) | 21, 965, 1328 |
| TspRI | CASTG | 4 cut(s) | 20, 227, 592, 801 |
| Tth111I | GACNNNGTC | 1 cut(s) | 239 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 892 |
| VpaK11BI | GGWCC | 2 cut(s) | 41, 883 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 945 |
| XapI | RAATTY | 2 cut(s) | 1300, 1430 |
| XbaI | TCTAGA | 1 cut(s) | 778 |
| XceI | RCATGY | 2 cut(s) | 1049, 1196 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 923 |
| XhoI | CTCGAG | 1 cut(s) | 837 |
| XmiI | GTMKAC | 2 cut(s) | 1092, 1239 |
| XspI | CTAG | 2 cut(s) | 779, 1086 |
| ZraI | GACGTC | 1 cut(s) | 241 |
| Zsp2I | ATGCAT | 2 cut(s) | 1060, 1207 |