Topless-related protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Lig_chan | PF00060 | 131 - 285 | 2.5e-29 | Ligand-gated ion channel |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 132 |
| AccB1I | GGYRCC | 1 cut(s) | 203 |
| AciI | CCGC | 3 cut(s) | 242, 698, 1082 |
| AclI | AACGTT | 1 cut(s) | 650 |
| AclWI | GGATC | 4 cut(s) | 2, 80, 399, 910 |
| AcsI | RAATTY | 1 cut(s) | 631 |
| AcuI | CTGAAG | 1 cut(s) | 666 |
| AcyI | GRCGYC | 1 cut(s) | 129 |
| AdeI | CACNNNGTG | 1 cut(s) | 545 |
| AfaI | GTAC | 1 cut(s) | 784 |
| AfeI | AGCGCT | 1 cut(s) | 211 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 17 |
| AflII | CTTAAG | 1 cut(s) | 674 |
| AgsI | TTSAA | 7 cut(s) | 56, 61, 232, 376, 452, 930, 976 |
| AjiI | CACGTC | 2 cut(s) | 910, 1025 |
| AluBI | AGCT | 8 cut(s) | 673, 822, 884, 1037, 1106, 1121, 1130, 1142 |
| AluI | AGCT | 8 cut(s) | 673, 822, 884, 1037, 1106, 1121, 1130, 1142 |
| Alw21I | GWGCWC | 2 cut(s) | 864, 966 |
| AlwI | GGATC | 4 cut(s) | 2, 80, 399, 910 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1133 |
| Aor51HI | AGCGCT | 1 cut(s) | 211 |
| AoxI | GGCC | 2 cut(s) | 811, 829 |
| ApeKI | GCWGC | 1 cut(s) | 140 |
| ApoI | RAATTY | 1 cut(s) | 631 |
| AseI | ATTAAT | 1 cut(s) | 462 |
| AspLEI | GCGC | 1 cut(s) | 212 |
| AspS9I | GGNCC | 2 cut(s) | 700, 829 |
| AsuHPI | GGTGA | 2 cut(s) | 1007, 1032 |
| AsuII | TTCGAA | 2 cut(s) | 738, 1074 |
| AvaII | GGWCC | 1 cut(s) | 700 |
| BanI | GGYRCC | 1 cut(s) | 203 |
| BbsI | GAAGAC | 1 cut(s) | 474 |
| Bbv12I | GWGCWC | 2 cut(s) | 864, 966 |
| BbvI | GCAGC | 1 cut(s) | 127 |
| BccI | CCATC | 4 cut(s) | 194, 498, 1020, 1099 |
| BceAI | ACGGC | 1 cut(s) | 107 |
| BclI | TGATCA | 2 cut(s) | 582, 1099 |
| BfaI | CTAG | 4 cut(s) | 315, 504, 731, 1118 |
| BfoI | RGCGCY | 1 cut(s) | 213 |
| BfrI | CTTAAG | 1 cut(s) | 674 |
| BisI | GCNGC | 2 cut(s) | 141, 1082 |
| BlsI | GCNGC | 2 cut(s) | 142, 1083 |
| Bme18I | GGWCC | 1 cut(s) | 700 |
| BmgBI | CACGTC | 2 cut(s) | 910, 1025 |
| BmgT120I | GGNCC | 2 cut(s) | 700, 829 |
| BmiI | GGNNCC | 2 cut(s) | 205, 830 |
| BmsI | GCATC | 4 cut(s) | 229, 647, 810, 910 |
| BpiI | GAAGAC | 1 cut(s) | 474 |
| Bpu14I | TTCGAA | 2 cut(s) | 738, 1074 |
| BsaHI | GRCGYC | 1 cut(s) | 129 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 17 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BseMII | CTCAG | 1 cut(s) | 705 |
| BseXI | GCAGC | 1 cut(s) | 127 |
| BsgI | GTGCAG | 1 cut(s) | 1047 |
| BshFI | GGCC | 2 cut(s) | 813, 831 |
| BshNI | GGYRCC | 1 cut(s) | 203 |
| BsiHKAI | GWGCWC | 2 cut(s) | 864, 966 |
| BslFI | GGGAC | 1 cut(s) | 493 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BsmFI | GGGAC | 1 cut(s) | 493 |
| BsnI | GGCC | 2 cut(s) | 813, 831 |
| Bsp119I | TTCGAA | 2 cut(s) | 738, 1074 |
| Bsp1286I | GDGCHC | 2 cut(s) | 864, 966 |
| Bsp143I | GATC | 9 cut(s) | 7, 75, 85, 163, 391, 582, 915, 1099, 1135 |
| BspACI | CCGC | 3 cut(s) | 242, 698, 1082 |
| BspANI | GGCC | 2 cut(s) | 813, 831 |
| BspCNI | CTCAG | 1 cut(s) | 706 |
| BspLI | GGNNCC | 2 cut(s) | 205, 830 |
| BspPI | GGATC | 4 cut(s) | 2, 80, 399, 910 |
| BspQI | GCTCTTC | 1 cut(s) | 1071 |
| BspT104I | TTCGAA | 2 cut(s) | 738, 1074 |
| BspT107I | GGYRCC | 1 cut(s) | 203 |
| BspTI | CTTAAG | 1 cut(s) | 674 |
| BssMI | GATC | 9 cut(s) | 7, 75, 85, 163, 391, 582, 915, 1099, 1135 |
| BssNI | GRCGYC | 1 cut(s) | 129 |
| Bst4CI | ACNGT | 2 cut(s) | 224, 545 |
| Bst6I | CTCTTC | 1 cut(s) | 1071 |
| BstACI | GRCGYC | 1 cut(s) | 129 |
| BstAFI | CTTAAG | 1 cut(s) | 674 |
| BstBI | TTCGAA | 2 cut(s) | 738, 1074 |
| BstC8I | GCNNGC | 2 cut(s) | 214, 864 |
| BstDEI | CTNAG | 2 cut(s) | 704, 714 |
| BstH2I | RGCGCY | 1 cut(s) | 213 |
| BstHHI | GCGC | 1 cut(s) | 212 |
| BstKTI | GATC | 9 cut(s) | 10, 78, 88, 166, 394, 585, 918, 1102, 1138 |
| BstMBI | GATC | 9 cut(s) | 7, 75, 85, 163, 391, 582, 915, 1099, 1135 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 635, 819, 828, 1034, 1127 |
| BstV1I | GCAGC | 1 cut(s) | 127 |
| BstV2I | GAAGAC | 1 cut(s) | 474 |
| BstX2I | RGATCY | 3 cut(s) | 7, 85, 391 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 497 |
| BstYI | RGATCY | 3 cut(s) | 7, 85, 391 |
| BsuRI | GGCC | 2 cut(s) | 813, 831 |
| BtrI | CACGTC | 2 cut(s) | 910, 1025 |
| BtsI | GCAGTG | 1 cut(s) | 624 |
| BtsIMutI | CAGTG | 3 cut(s) | 229, 550, 624 |
| Cac8I | GCNNGC | 2 cut(s) | 214, 864 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1133 |
| CfoI | GCGC | 1 cut(s) | 212 |
| Cfr13I | GGNCC | 2 cut(s) | 700, 829 |
| Csp6I | GTAC | 1 cut(s) | 783 |
| CviAII | CATG | 2 cut(s) | 363, 942 |
| CviQI | GTAC | 1 cut(s) | 783 |
| DdeI | CTNAG | 2 cut(s) | 704, 714 |
| DpnI | GATC | 9 cut(s) | 9, 77, 87, 165, 393, 584, 917, 1101, 1137 |
| DpnII | GATC | 9 cut(s) | 7, 75, 85, 163, 391, 582, 915, 1099, 1135 |
| DraIII | CACNNNGTG | 1 cut(s) | 545 |
| Eam1104I | CTCTTC | 1 cut(s) | 1071 |
| EarI | CTCTTC | 1 cut(s) | 1071 |
| Eco47I | GGWCC | 1 cut(s) | 700 |
| Eco47III | AGCGCT | 1 cut(s) | 211 |
| Eco57I | CTGAAG | 1 cut(s) | 666 |
| EcoO109I | RGGNCCY | 1 cut(s) | 829 |
| EcoT22I | ATGCAT | 1 cut(s) | 364 |
| FaeI | CATG | 2 cut(s) | 366, 945 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 54, 86 |
| FaqI | GGGAC | 1 cut(s) | 493 |
| FatI | CATG | 2 cut(s) | 362, 941 |
| FauNDI | CATATG | 1 cut(s) | 587 |
| FbaI | TGATCA | 2 cut(s) | 582, 1099 |
| Fnu4HI | GCNGC | 2 cut(s) | 141, 1082 |
| Fsp4HI | GCNGC | 2 cut(s) | 141, 1082 |
| FspBI | CTAG | 4 cut(s) | 315, 504, 731, 1118 |
| GlaI | GCGC | 1 cut(s) | 211 |
| GluI | GCNGC | 2 cut(s) | 141, 1082 |
| HaeII | RGCGCY | 1 cut(s) | 213 |
| HaeIII | GGCC | 2 cut(s) | 813, 831 |
| HhaI | GCGC | 1 cut(s) | 212 |
| Hin1I | GRCGYC | 1 cut(s) | 129 |
| Hin1II | CATG | 2 cut(s) | 366, 945 |
| Hin6I | GCGC | 1 cut(s) | 210 |
| HinP1I | GCGC | 1 cut(s) | 210 |
| HincII | GTYRAC | 2 cut(s) | 127, 402 |
| HindII | GTYRAC | 2 cut(s) | 127, 402 |
| HindIII | AAGCTT | 2 cut(s) | 671, 1104 |
| HinfI | GANTC | 7 cut(s) | 262, 311, 481, 665, 926, 952, 992 |
| HphI | GGTGA | 2 cut(s) | 1007, 1032 |
| Hpy166II | GTNNAC | 4 cut(s) | 127, 289, 402, 785 |
| Hpy188I | TCNGA | 1 cut(s) | 848 |
| Hpy188III | TCNNGA | 4 cut(s) | 373, 449, 913, 930 |
| Hpy8I | GTNNAC | 4 cut(s) | 127, 289, 402, 785 |
| Hpy99I | CGWCG | 1 cut(s) | 1026 |
| HpyAV | CCTTC | 3 cut(s) | 688, 751, 942 |
| HpyCH4III | ACNGT | 2 cut(s) | 224, 545 |
| HpyCH4IV | ACGT | 4 cut(s) | 129, 650, 909, 1024 |
| HpyCH4V | TGCA | 4 cut(s) | 143, 362, 539, 1028 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 635, 819, 828, 1034, 1127 |
| HpyF3I | CTNAG | 2 cut(s) | 704, 714 |
| HpySE526I | ACGT | 4 cut(s) | 129, 650, 909, 1024 |
| Hsp92I | GRCGYC | 1 cut(s) | 129 |
| Hsp92II | CATG | 2 cut(s) | 366, 945 |
| HspAI | GCGC | 1 cut(s) | 210 |
| Ksp22I | TGATCA | 2 cut(s) | 582, 1099 |
| Kzo9I | GATC | 9 cut(s) | 7, 75, 85, 163, 391, 582, 915, 1099, 1135 |
| LguI | GCTCTTC | 1 cut(s) | 1071 |
| LpnPI | CCDG | 7 cut(s) | 3, 198, 210, 220, 496, 783, 936 |
| Lsp1109I | GCAGC | 1 cut(s) | 127 |
| LweI | GCATC | 4 cut(s) | 229, 647, 810, 910 |
| MaeI | CTAG | 4 cut(s) | 315, 504, 731, 1118 |
| MaeII | ACGT | 4 cut(s) | 129, 650, 909, 1024 |
| MaeIII | GTNAC | 4 cut(s) | 560, 620, 709, 1030 |
| MalI | GATC | 9 cut(s) | 9, 77, 87, 165, 393, 584, 917, 1101, 1137 |
| MboI | GATC | 9 cut(s) | 7, 75, 85, 163, 391, 582, 915, 1099, 1135 |
| MboII | GAAGA | 3 cut(s) | 409, 479, 1088 |
| MflI | RGATCY | 3 cut(s) | 7, 85, 391 |
| MhlI | GDGCHC | 2 cut(s) | 864, 966 |
| MluCI | AATT | 8 cut(s) | 13, 56, 149, 336, 459, 631, 776, 1000 |
| MlyI | GAGTC | 2 cut(s) | 475, 986 |
| MmeI | TCCRAC | 1 cut(s) | 826 |
| MnlI | CCTC | 7 cut(s) | 54, 107, 418, 496, 518, 848, 998 |
| Mph1103I | ATGCAT | 1 cut(s) | 364 |
| MseI | TTAA | 6 cut(s) | 135, 462, 605, 647, 675, 816 |
| MspCI | CTTAAG | 1 cut(s) | 674 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 635, 819, 828, 1034, 1127 |
| NdeI | CATATG | 1 cut(s) | 587 |
| NdeII | GATC | 9 cut(s) | 7, 75, 85, 163, 391, 582, 915, 1099, 1135 |
| NlaIII | CATG | 2 cut(s) | 366, 945 |
| NlaIV | GGNNCC | 2 cut(s) | 205, 830 |
| NmuCI | GTSAC | 1 cut(s) | 709 |
| NsiI | ATGCAT | 1 cut(s) | 364 |
| NspV | TTCGAA | 2 cut(s) | 738, 1074 |
| PciSI | GCTCTTC | 1 cut(s) | 1071 |
| PfeI | GAWTC | 5 cut(s) | 262, 311, 665, 926, 952 |
| PkrI | GCNGC | 2 cut(s) | 142, 1083 |
| PleI | GAGTC | 2 cut(s) | 475, 986 |
| PpsI | GAGTC | 2 cut(s) | 475, 986 |
| PshBI | ATTAAT | 1 cut(s) | 462 |
| Psp1406I | AACGTT | 1 cut(s) | 650 |
| PspN4I | GGNNCC | 2 cut(s) | 205, 830 |
| PspPI | GGNCC | 2 cut(s) | 700, 829 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1133 |
| PsuI | RGATCY | 3 cut(s) | 7, 85, 391 |
| RsaI | GTAC | 1 cut(s) | 784 |
| RsaNI | GTAC | 1 cut(s) | 783 |
| SapI | GCTCTTC | 1 cut(s) | 1071 |
| SaqAI | TTAA | 6 cut(s) | 135, 462, 605, 647, 675, 816 |
| SatI | GCNGC | 2 cut(s) | 141, 1082 |
| Sau3AI | GATC | 9 cut(s) | 7, 75, 85, 163, 391, 582, 915, 1099, 1135 |
| Sau96I | GGNCC | 2 cut(s) | 700, 829 |
| SchI | GAGTC | 2 cut(s) | 475, 986 |
| SduI | GDGCHC | 2 cut(s) | 864, 966 |
| SfaNI | GCATC | 4 cut(s) | 229, 647, 810, 910 |
| SfuI | TTCGAA | 2 cut(s) | 738, 1074 |
| SinI | GGWCC | 1 cut(s) | 700 |
| SmlI | CTYRAG | 1 cut(s) | 674 |
| SmoI | CTYRAG | 1 cut(s) | 674 |
| Sse9I | AATT | 8 cut(s) | 13, 56, 149, 336, 459, 631, 776, 1000 |
| SsiI | CCGC | 3 cut(s) | 242, 698, 1082 |
| SspMI | CTAG | 4 cut(s) | 315, 504, 731, 1118 |
| TaaI | ACNGT | 2 cut(s) | 224, 545 |
| TaiI | ACGT | 4 cut(s) | 132, 653, 912, 1027 |
| TaqI | TCGA | 6 cut(s) | 237, 265, 738, 990, 1074, 1138 |
| TasI | AATT | 8 cut(s) | 13, 56, 149, 336, 459, 631, 776, 1000 |
| TatI | WGTACW | 1 cut(s) | 782 |
| TauI | GCSGC | 1 cut(s) | 1084 |
| TfiI | GAWTC | 5 cut(s) | 262, 311, 665, 926, 952 |
| Tru1I | TTAA | 6 cut(s) | 135, 462, 605, 647, 675, 816 |
| Tru9I | TTAA | 6 cut(s) | 135, 462, 605, 647, 675, 816 |
| TscAI | CASTG | 3 cut(s) | 229, 550, 631 |
| TseFI | GTSAC | 1 cut(s) | 709 |
| TseI | GCWGC | 1 cut(s) | 140 |
| Tsp45I | GTSAC | 1 cut(s) | 709 |
| TspDTI | ATGAA | 6 cut(s) | 169, 409, 480, 876, 880, 993 |
| TspRI | CASTG | 3 cut(s) | 229, 550, 631 |
| Vha464I | CTTAAG | 1 cut(s) | 674 |
| VpaK11BI | GGWCC | 1 cut(s) | 700 |
| VspI | ATTAAT | 1 cut(s) | 462 |
| XapI | RAATTY | 1 cut(s) | 631 |
| XspI | CTAG | 4 cut(s) | 315, 504, 731, 1118 |
| ZraI | GACGTC | 1 cut(s) | 130 |
| Zsp2I | ATGCAT | 1 cut(s) | 364 |