Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 215 - 306 | 7e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 971 |
| AccI | GTMKAC | 1 cut(s) | 39 |
| AciI | CCGC | 1 cut(s) | 465 |
| AclWI | GGATC | 1 cut(s) | 713 |
| AcoI | YGGCCR | 1 cut(s) | 63 |
| AcsI | RAATTY | 4 cut(s) | 45, 480, 796, 965 |
| AcuI | CTGAAG | 1 cut(s) | 207 |
| AfaI | GTAC | 3 cut(s) | 469, 741, 876 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 585 |
| AgsI | TTSAA | 5 cut(s) | 415, 749, 773, 786, 986 |
| AhlI | ACTAGT | 1 cut(s) | 835 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 68, 100 |
| AluBI | AGCT | 6 cut(s) | 236, 398, 444, 776, 899, 959 |
| AluI | AGCT | 6 cut(s) | 236, 398, 444, 776, 899, 959 |
| Alw26I | GTCTC | 1 cut(s) | 554 |
| AlwI | GGATC | 1 cut(s) | 713 |
| AoxI | GGCC | 2 cut(s) | 14, 63 |
| ApeKI | GCWGC | 3 cut(s) | 398, 641, 841 |
| ApoI | RAATTY | 4 cut(s) | 45, 480, 796, 965 |
| AseI | ATTAAT | 1 cut(s) | 867 |
| AspS9I | GGNCC | 1 cut(s) | 791 |
| AsuHPI | GGTGA | 1 cut(s) | 660 |
| AvaII | GGWCC | 1 cut(s) | 791 |
| BalI | TGGCCA | 1 cut(s) | 65 |
| BbvI | GCAGC | 3 cut(s) | 385, 628, 828 |
| BccI | CCATC | 1 cut(s) | 682 |
| BciVI | GTATCC | 1 cut(s) | 93 |
| BcoDI | GTCTC | 1 cut(s) | 554 |
| BcuI | ACTAGT | 1 cut(s) | 835 |
| BfaI | CTAG | 2 cut(s) | 645, 836 |
| BfmI | CTRYAG | 1 cut(s) | 257 |
| BfuI | GTATCC | 1 cut(s) | 93 |
| BisI | GCNGC | 3 cut(s) | 399, 642, 842 |
| BlsI | GCNGC | 3 cut(s) | 400, 643, 843 |
| BmcAI | AGTACT | 1 cut(s) | 741 |
| Bme18I | GGWCC | 1 cut(s) | 791 |
| BmgT120I | GGNCC | 1 cut(s) | 791 |
| BmsI | GCATC | 2 cut(s) | 574, 967 |
| BpmI | CTGGAG | 1 cut(s) | 466 |
| BsaBI | GATNNNNATC | 2 cut(s) | 564, 996 |
| BsaI | GGTCTC | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 2 cut(s) | 325, 878 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 585 |
| Bse118I | RCCGGY | 1 cut(s) | 578 |
| Bse3DI | GCAATG | 2 cut(s) | 101, 723 |
| Bse8I | GATNNNNATC | 2 cut(s) | 564, 996 |
| BseDI | CCNNGG | 2 cut(s) | 325, 878 |
| BseGI | GGATG | 1 cut(s) | 982 |
| BseJI | GATNNNNATC | 2 cut(s) | 564, 996 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 585 |
| BseMI | GCAATG | 2 cut(s) | 101, 723 |
| BseXI | GCAGC | 3 cut(s) | 385, 628, 828 |
| BsgI | GTGCAG | 1 cut(s) | 111 |
| BshFI | GGCC | 2 cut(s) | 16, 65 |
| BsiSI | CCGG | 1 cut(s) | 579 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 585 |
| BsmAI | GTCTC | 1 cut(s) | 554 |
| BsmI | GAATGC | 1 cut(s) | 781 |
| BsnI | GGCC | 2 cut(s) | 16, 65 |
| Bso31I | GGTCTC | 1 cut(s) | 554 |
| Bsp143I | GATC | 3 cut(s) | 386, 705, 828 |
| BspACI | CCGC | 1 cut(s) | 465 |
| BspANI | GGCC | 2 cut(s) | 16, 65 |
| BspPI | GGATC | 1 cut(s) | 713 |
| BspTNI | GGTCTC | 1 cut(s) | 554 |
| BsrDI | GCAATG | 2 cut(s) | 101, 723 |
| BsrFI | RCCGGY | 1 cut(s) | 578 |
| BssAI | RCCGGY | 1 cut(s) | 578 |
| BssECI | CCNNGG | 2 cut(s) | 325, 878 |
| BssMI | GATC | 3 cut(s) | 386, 705, 828 |
| BssT1I | CCWWGG | 2 cut(s) | 325, 878 |
| Bst4CI | ACNGT | 3 cut(s) | 609, 744, 895 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 1 cut(s) | 368 |
| BstDEI | CTNAG | 2 cut(s) | 6, 621 |
| BstF5I | GGATG | 1 cut(s) | 982 |
| BstKTI | GATC | 3 cut(s) | 389, 708, 831 |
| BstMAI | GTCTC | 1 cut(s) | 554 |
| BstMBI | GATC | 3 cut(s) | 386, 705, 828 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 404 |
| BstSFI | CTRYAG | 1 cut(s) | 257 |
| BstV1I | GCAGC | 3 cut(s) | 385, 628, 828 |
| BsuI | GTATCC | 1 cut(s) | 93 |
| BsuRI | GGCC | 2 cut(s) | 16, 65 |
| BtsCI | GGATG | 1 cut(s) | 982 |
| Cac8I | GCNNGC | 1 cut(s) | 368 |
| Cfr10I | RCCGGY | 1 cut(s) | 578 |
| Cfr13I | GGNCC | 1 cut(s) | 791 |
| Csp6I | GTAC | 3 cut(s) | 468, 740, 875 |
| CviAII | CATG | 7 cut(s) | 350, 377, 677, 731, 851, 902, 917 |
| CviQI | GTAC | 3 cut(s) | 468, 740, 875 |
| DdeI | CTNAG | 2 cut(s) | 6, 621 |
| DpnI | GATC | 3 cut(s) | 388, 707, 830 |
| DpnII | GATC | 3 cut(s) | 386, 705, 828 |
| EaeI | YGGCCR | 1 cut(s) | 63 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 2 cut(s) | 325, 878 |
| Eco147I | AGGCCT | 1 cut(s) | 16 |
| Eco31I | GGTCTC | 1 cut(s) | 554 |
| Eco32I | GATATC | 1 cut(s) | 322 |
| Eco47I | GGWCC | 1 cut(s) | 791 |
| Eco57I | CTGAAG | 1 cut(s) | 207 |
| EcoRV | GATATC | 1 cut(s) | 322 |
| EcoT14I | CCWWGG | 2 cut(s) | 325, 878 |
| EcoT22I | ATGCAT | 2 cut(s) | 226, 567 |
| ErhI | CCWWGG | 2 cut(s) | 325, 878 |
| FaeI | CATG | 7 cut(s) | 353, 380, 680, 734, 854, 905, 920 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 408, 440 |
| FatI | CATG | 7 cut(s) | 349, 376, 676, 730, 850, 901, 916 |
| FblI | GTMKAC | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 3 cut(s) | 399, 642, 842 |
| FokI | GGATG | 1 cut(s) | 989 |
| Fsp4HI | GCNGC | 3 cut(s) | 399, 642, 842 |
| FspBI | CTAG | 2 cut(s) | 645, 836 |
| GluI | GCNGC | 3 cut(s) | 399, 642, 842 |
| GsuI | CTGGAG | 1 cut(s) | 466 |
| HaeIII | GGCC | 2 cut(s) | 16, 65 |
| HapII | CCGG | 1 cut(s) | 579 |
| Hin1II | CATG | 7 cut(s) | 353, 380, 680, 734, 854, 905, 920 |
| HincII | GTYRAC | 1 cut(s) | 200 |
| HindII | GTYRAC | 1 cut(s) | 200 |
| HindIII | AAGCTT | 1 cut(s) | 774 |
| HinfI | GANTC | 2 cut(s) | 596, 749 |
| HpaII | CCGG | 1 cut(s) | 579 |
| HphI | GGTGA | 1 cut(s) | 660 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 200 |
| Hpy188I | TCNGA | 3 cut(s) | 209, 754, 833 |
| Hpy188III | TCNNGA | 1 cut(s) | 962 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 200 |
| HpyAV | CCTTC | 1 cut(s) | 619 |
| HpyCH4III | ACNGT | 3 cut(s) | 609, 744, 895 |
| HpyCH4IV | ACGT | 1 cut(s) | 665 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 404 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 621 |
| HpySE526I | ACGT | 1 cut(s) | 665 |
| Hsp92II | CATG | 7 cut(s) | 353, 380, 680, 734, 854, 905, 920 |
| Kzo9I | GATC | 3 cut(s) | 386, 705, 828 |
| LmnI | GCTCC | 1 cut(s) | 964 |
| LpnPI | CCDG | 8 cut(s) | 225, 286, 299, 430, 456, 554, 571, 592 |
| Lsp1109I | GCAGC | 3 cut(s) | 385, 628, 828 |
| LweI | GCATC | 2 cut(s) | 574, 967 |
| MaeI | CTAG | 2 cut(s) | 645, 836 |
| MaeII | ACGT | 1 cut(s) | 665 |
| MaeIII | GTNAC | 3 cut(s) | 115, 661, 666 |
| MalI | GATC | 3 cut(s) | 388, 707, 830 |
| MboI | GATC | 3 cut(s) | 386, 705, 828 |
| MboII | GAAGA | 4 cut(s) | 88, 91, 200, 396 |
| MfeI | CAATTG | 2 cut(s) | 305, 786 |
| MlsI | TGGCCA | 1 cut(s) | 65 |
| MluNI | TGGCCA | 1 cut(s) | 65 |
| MmeI | TCCRAC | 1 cut(s) | 361 |
| MnlI | CCTC | 3 cut(s) | 184, 622, 660 |
| Mox20I | TGGCCA | 1 cut(s) | 65 |
| Mph1103I | ATGCAT | 2 cut(s) | 226, 567 |
| MscI | TGGCCA | 1 cut(s) | 65 |
| MseI | TTAA | 7 cut(s) | 11, 461, 489, 695, 867, 923, 1003 |
| Msp20I | TGGCCA | 1 cut(s) | 65 |
| MspA1I | CMGCKG | 2 cut(s) | 398, 444 |
| MspI | CCGG | 1 cut(s) | 579 |
| MunI | CAATTG | 2 cut(s) | 305, 786 |
| Mva1269I | GAATGC | 1 cut(s) | 781 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 404 |
| NdeII | GATC | 3 cut(s) | 386, 705, 828 |
| NlaIII | CATG | 7 cut(s) | 353, 380, 680, 734, 854, 905, 920 |
| NmuCI | GTSAC | 1 cut(s) | 666 |
| NsiI | ATGCAT | 2 cut(s) | 226, 567 |
| PceI | AGGCCT | 1 cut(s) | 16 |
| PctI | GAATGC | 1 cut(s) | 781 |
| PfeI | GAWTC | 2 cut(s) | 596, 749 |
| PkrI | GCNGC | 3 cut(s) | 400, 643, 843 |
| PshBI | ATTAAT | 1 cut(s) | 867 |
| PsiI | TTATAA | 1 cut(s) | 971 |
| PspPI | GGNCC | 1 cut(s) | 791 |
| PvuII | CAGCTG | 2 cut(s) | 398, 444 |
| RsaI | GTAC | 3 cut(s) | 469, 741, 876 |
| RsaNI | GTAC | 3 cut(s) | 468, 740, 875 |
| SaqAI | TTAA | 7 cut(s) | 11, 461, 489, 695, 867, 923, 1003 |
| SatI | GCNGC | 3 cut(s) | 399, 642, 842 |
| Sau3AI | GATC | 3 cut(s) | 386, 705, 828 |
| Sau96I | GGNCC | 1 cut(s) | 791 |
| ScaI | AGTACT | 1 cut(s) | 741 |
| SfaNI | GCATC | 2 cut(s) | 574, 967 |
| SfcI | CTRYAG | 1 cut(s) | 257 |
| SinI | GGWCC | 1 cut(s) | 791 |
| SpeI | ACTAGT | 1 cut(s) | 835 |
| SseBI | AGGCCT | 1 cut(s) | 16 |
| SsiI | CCGC | 1 cut(s) | 465 |
| SspI | AATATT | 1 cut(s) | 214 |
| SspMI | CTAG | 2 cut(s) | 645, 836 |
| StuI | AGGCCT | 1 cut(s) | 16 |
| StyI | CCWWGG | 2 cut(s) | 325, 878 |
| TaaI | ACNGT | 3 cut(s) | 609, 744, 895 |
| TaiI | ACGT | 1 cut(s) | 668 |
| TaqII | GACCGA | 1 cut(s) | 808 |
| TatI | WGTACW | 1 cut(s) | 739 |
| TfiI | GAWTC | 2 cut(s) | 596, 749 |
| Tru1I | TTAA | 7 cut(s) | 11, 461, 489, 695, 867, 923, 1003 |
| Tru9I | TTAA | 7 cut(s) | 11, 461, 489, 695, 867, 923, 1003 |
| TseFI | GTSAC | 1 cut(s) | 666 |
| TseI | GCWGC | 3 cut(s) | 398, 641, 841 |
| Tsp45I | GTSAC | 1 cut(s) | 666 |
| TspDTI | ATGAA | 2 cut(s) | 89, 539 |
| VpaK11BI | GGWCC | 1 cut(s) | 791 |
| VspI | ATTAAT | 1 cut(s) | 867 |
| XapI | RAATTY | 4 cut(s) | 45, 480, 796, 965 |
| XmiI | GTMKAC | 1 cut(s) | 39 |
| XspI | CTAG | 2 cut(s) | 645, 836 |
| ZrmI | AGTACT | 1 cut(s) | 741 |
| Zsp2I | ATGCAT | 2 cut(s) | 226, 567 |