Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 12 - 97 | 8.7e-22 | Rx N-terminal domain |
| NB-ARC | PF00931 | 192 - 347 | 4.2e-31 | NB-ARC domain |
| WHD_DRP | PF23559 | 375 - 429 | 2.3e-15 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 476 - 744 | 2.1e-31 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 596 - 724 | 8.5e-27 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 1103 - 1186 | 4.2e-07 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 1128 - 1185 | 9.1e-06 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1593 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3400 |
| Acc36I | ACCTGC | 1 cut(s) | 807 |
| Acc65I | GGTACC | 2 cut(s) | 1533, 3653 |
| AccB1I | GGYRCC | 2 cut(s) | 1533, 3653 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3506 |
| AccI | GTMKAC | 3 cut(s) | 1366, 2620, 3181 |
| AccII | CGCG | 1 cut(s) | 2724 |
| AciI | CCGC | 5 cut(s) | 227, 1937, 2724, 3806, 3827 |
| AclWI | GGATC | 3 cut(s) | 743, 3276, 3517 |
| AcoI | YGGCCR | 2 cut(s) | 1797, 1934 |
| AcuI | CTGAAG | 5 cut(s) | 1335, 1643, 2145, 2777, 3257 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 82, 133, 712, 2858, 3506, 3663 |
| AflII | CTTAAG | 1 cut(s) | 2510 |
| AflIII | ACRYGT | 3 cut(s) | 1291, 1330, 1672 |
| AjnI | CCWGG | 6 cut(s) | 27, 1536, 1780, 1939, 1965, 2580 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 614, 646, 1220, 1252, 3234, 3266, 3841, 3873 |
| Alw21I | GWGCWC | 1 cut(s) | 1057 |
| Alw26I | GTCTC | 7 cut(s) | 962, 1509, 1663, 2042, 2852, 3070, 3354 |
| AlwI | GGATC | 3 cut(s) | 743, 3276, 3517 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1606, 2587 |
| Ama87I | CYCGRG | 1 cut(s) | 912 |
| ApeKI | GCWGC | 6 cut(s) | 23, 407, 953, 1357, 2673, 3579 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1727, 1759, 1762, 1794 |
| AseI | ATTAAT | 1 cut(s) | 2420 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1208, 2988, 3363 |
| Asp718I | GGTACC | 2 cut(s) | 1533, 3653 |
| AspS9I | GGNCC | 6 cut(s) | 1972, 2408, 3460, 3593, 3603, 3692 |
| AsuC2I | CCSGG | 1 cut(s) | 3186 |
| AsuII | TTCGAA | 2 cut(s) | 1903, 3408 |
| AsuNHI | GCTAGC | 1 cut(s) | 410 |
| AvaI | CYCGRG | 1 cut(s) | 912 |
| AvaII | GGWCC | 3 cut(s) | 2408, 3460, 3692 |
| AxyI | CCTNAGG | 1 cut(s) | 177 |
| BaeGI | GKGCMC | 1 cut(s) | 1341 |
| BalI | TGGCCA | 1 cut(s) | 1799 |
| BanI | GGYRCC | 2 cut(s) | 1533, 3653 |
| BanII | GRGCYC | 1 cut(s) | 175 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2730, 2762, 3696, 3728 |
| BauI | CACGAG | 1 cut(s) | 3455 |
| BbsI | GAAGAC | 3 cut(s) | 216, 629, 2738 |
| Bbv12I | GWGCWC | 1 cut(s) | 1057 |
| BbvI | GCAGC | 6 cut(s) | 10, 419, 940, 1344, 2660, 3591 |
| BceAI | ACGGC | 3 cut(s) | 281, 1633, 3081 |
| BciT130I | CCWGG | 6 cut(s) | 29, 1538, 1782, 1941, 1967, 2582 |
| BciVI | GTATCC | 1 cut(s) | 1162 |
| BcnI | CCSGG | 1 cut(s) | 3186 |
| BcoDI | GTCTC | 7 cut(s) | 962, 1509, 1663, 2042, 2852, 3070, 3354 |
| BfaI | CTAG | 9 cut(s) | 411, 572, 839, 1548, 2543, 2774, 2891, 3483, 3786 |
| BfmI | CTRYAG | 2 cut(s) | 1598, 3104 |
| BfrI | CTTAAG | 1 cut(s) | 2510 |
| BfuAI | ACCTGC | 1 cut(s) | 807 |
| BfuI | GTATCC | 1 cut(s) | 1162 |
| BisI | GCNGC | 7 cut(s) | 24, 408, 954, 1358, 1937, 2674, 3580 |
| BlsI | GCNGC | 7 cut(s) | 25, 409, 955, 1359, 1938, 2675, 3581 |
| BmcAI | AGTACT | 2 cut(s) | 1931, 2780 |
| Bme1390I | CCNGG | 7 cut(s) | 29, 1538, 1782, 1941, 1967, 2582, 3186 |
| Bme18I | GGWCC | 3 cut(s) | 2408, 3460, 3692 |
| BmeT110I | CYCGRG | 1 cut(s) | 912 |
| BmgT120I | GGNCC | 6 cut(s) | 1972, 2408, 3460, 3593, 3603, 3692 |
| BmiI | GGNNCC | 3 cut(s) | 174, 1535, 3655 |
| BmrFI | CCNGG | 7 cut(s) | 29, 1538, 1782, 1941, 1967, 2582, 3186 |
| BmrI | ACTGGG | 1 cut(s) | 2190 |
| BmtI | GCTAGC | 1 cut(s) | 414 |
| BmuI | ACTGGG | 1 cut(s) | 2190 |
| BpiI | GAAGAC | 3 cut(s) | 216, 629, 2738 |
| BpmI | CTGGAG | 4 cut(s) | 1724, 1988, 2564, 3768 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3320, 3339 |
| Bpu14I | TTCGAA | 2 cut(s) | 1903, 3408 |
| BpuEI | CTTGAG | 6 cut(s) | 1549, 1687, 2171, 3052, 3293, 3329 |
| BpuMI | CCSGG | 1 cut(s) | 3186 |
| Bsa29I | ATCGAT | 1 cut(s) | 3512 |
| BsaAI | YACGTR | 1 cut(s) | 3467 |
| BsaJI | CCNNGG | 6 cut(s) | 27, 28, 384, 913, 1227, 2857 |
| BsaWI | WCCGGW | 1 cut(s) | 2485 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 515, 545, 2176, 2206 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 82, 133, 712, 2858, 3506, 3663 |
| Bse1I | ACTGG | 8 cut(s) | 1087, 1712, 1741, 1937, 2179, 2196, 3695, 3751 |
| Bse21I | CCTNAGG | 1 cut(s) | 177 |
| Bse3DI | GCAATG | 2 cut(s) | 1183, 1252 |
| BseBI | CCWGG | 6 cut(s) | 29, 1538, 1782, 1941, 1967, 2582 |
| BseCI | ATCGAT | 1 cut(s) | 3512 |
| BseDI | CCNNGG | 6 cut(s) | 27, 28, 384, 913, 1227, 2857 |
| BseGI | GGATG | 8 cut(s) | 235, 787, 880, 1237, 2121, 2852, 3052, 3209 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 82, 133, 712, 2858, 3506, 3663 |
| BseMI | GCAATG | 2 cut(s) | 1183, 1252 |
| BseMII | CTCAG | 4 cut(s) | 168, 1598, 2258, 2465 |
| BseNI | ACTGG | 8 cut(s) | 1087, 1712, 1741, 1937, 2179, 2196, 3695, 3751 |
| BseRI | GAGGAG | 3 cut(s) | 1805, 1977, 2168 |
| BseSI | GKGCMC | 1 cut(s) | 1341 |
| BseXI | GCAGC | 6 cut(s) | 10, 419, 940, 1344, 2660, 3591 |
| BseYI | CCCAGC | 1 cut(s) | 1445 |
| BsgI | GTGCAG | 1 cut(s) | 2767 |
| Bsh1236I | CGCG | 1 cut(s) | 2724 |
| BshNI | GGYRCC | 2 cut(s) | 1533, 3653 |
| BshVI | ATCGAT | 1 cut(s) | 3512 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1057 |
| BsiHKCI | CYCGRG | 1 cut(s) | 912 |
| BsiSI | CCGG | 2 cut(s) | 2486, 3186 |
| BslFI | GGGAC | 2 cut(s) | 2331, 3543 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 82, 133, 712, 2858, 3506, 3663 |
| BsmAI | GTCTC | 7 cut(s) | 962, 1509, 1663, 2042, 2852, 3070, 3354 |
| BsmBI | CGTCTC | 1 cut(s) | 962 |
| BsmFI | GGGAC | 2 cut(s) | 2331, 3543 |
| BsmI | GAATGC | 1 cut(s) | 2003 |
| BsoBI | CYCGRG | 1 cut(s) | 912 |
| Bsp119I | TTCGAA | 2 cut(s) | 1903, 3408 |
| Bsp1286I | GDGCHC | 3 cut(s) | 175, 1057, 1341 |
| Bsp1407I | TGTACA | 3 cut(s) | 294, 1476, 2908 |
| Bsp143I | GATC | 6 cut(s) | 166, 735, 1267, 1279, 3268, 3509 |
| BspACI | CCGC | 5 cut(s) | 227, 1937, 2724, 3806, 3827 |
| BspCNI | CTCAG | 4 cut(s) | 169, 1599, 2259, 2466 |
| BspDI | ATCGAT | 1 cut(s) | 3512 |
| BspFNI | CGCG | 1 cut(s) | 2724 |
| BspHI | TCATGA | 3 cut(s) | 220, 445, 649 |
| BspLI | GGNNCC | 3 cut(s) | 174, 1535, 3655 |
| BspMAI | CTGCAG | 1 cut(s) | 3108 |
| BspMI | ACCTGC | 1 cut(s) | 807 |
| BspOI | GCTAGC | 1 cut(s) | 414 |
| BspPI | GGATC | 3 cut(s) | 743, 3276, 3517 |
| BspQI | GCTCTTC | 1 cut(s) | 2445 |
| BspT104I | TTCGAA | 2 cut(s) | 1903, 3408 |
| BspT107I | GGYRCC | 2 cut(s) | 1533, 3653 |
| BspTI | CTTAAG | 1 cut(s) | 2510 |
| BsrDI | GCAATG | 2 cut(s) | 1183, 1252 |
| BsrGI | TGTACA | 3 cut(s) | 294, 1476, 2908 |
| BsrI | ACTGG | 8 cut(s) | 1087, 1712, 1741, 1937, 2179, 2196, 3695, 3751 |
| BssECI | CCNNGG | 6 cut(s) | 27, 28, 384, 913, 1227, 2857 |
| BssMI | GATC | 6 cut(s) | 166, 735, 1267, 1279, 3268, 3509 |
| BssNAI | GTATAC | 1 cut(s) | 1367 |
| BssSI | CACGAG | 1 cut(s) | 3455 |
| BssT1I | CCWWGG | 2 cut(s) | 384, 1227 |
| Bst1107I | GTATAC | 1 cut(s) | 1367 |
| Bst2BI | CACGAG | 1 cut(s) | 3455 |
| Bst2UI | CCWGG | 6 cut(s) | 29, 1538, 1782, 1941, 1967, 2582 |
| Bst4CI | ACNGT | 8 cut(s) | 656, 2505, 2589, 2846, 2908, 3402, 3540, 3666 |
| Bst6I | CTCTTC | 2 cut(s) | 2445, 2796 |
| BstAFI | CTTAAG | 1 cut(s) | 2510 |
| BstAUI | TGTACA | 3 cut(s) | 294, 1476, 2908 |
| BstBAI | YACGTR | 1 cut(s) | 3467 |
| BstBI | TTCGAA | 2 cut(s) | 1903, 3408 |
| BstC8I | GCNNGC | 4 cut(s) | 412, 1586, 1801, 2136 |
| BstDEI | CTNAG | 9 cut(s) | 177, 430, 728, 1607, 2267, 2474, 2607, 3320, 3339 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 131 |
| BstF5I | GGATG | 8 cut(s) | 235, 787, 880, 1237, 2121, 2852, 3052, 3209 |
| BstFNI | CGCG | 1 cut(s) | 2724 |
| BstKTI | GATC | 6 cut(s) | 169, 738, 1270, 1282, 3271, 3512 |
| BstMAI | GTCTC | 7 cut(s) | 962, 1509, 1663, 2042, 2852, 3070, 3354 |
| BstMBI | GATC | 6 cut(s) | 166, 735, 1267, 1279, 3268, 3509 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 56, 224, 1874, 2164, 2977, 3316, 3772 |
| BstNI | CCWGG | 6 cut(s) | 29, 1538, 1782, 1941, 1967, 2582 |
| BstNSI | RCATGY | 3 cut(s) | 1295, 1334, 1676 |
| BstSCI | CCNGG | 7 cut(s) | 27, 1536, 1780, 1939, 1965, 2580, 3184 |
| BstSFI | CTRYAG | 2 cut(s) | 1598, 3104 |
| BstSLI | GKGCMC | 1 cut(s) | 1341 |
| BstSNI | TACGTA | 1 cut(s) | 3467 |
| BstUI | CGCG | 1 cut(s) | 2724 |
| BstV1I | GCAGC | 6 cut(s) | 10, 419, 940, 1344, 2660, 3591 |
| BstV2I | GAAGAC | 3 cut(s) | 216, 629, 2738 |
| BstX2I | RGATCY | 2 cut(s) | 735, 3268 |
| BstYI | RGATCY | 2 cut(s) | 735, 3268 |
| BstZ17I | GTATAC | 1 cut(s) | 1367 |
| Bsu15I | ATCGAT | 1 cut(s) | 3512 |
| Bsu36I | CCTNAGG | 1 cut(s) | 177 |
| BsuI | GTATCC | 1 cut(s) | 1162 |
| BsuTUI | ATCGAT | 1 cut(s) | 3512 |
| BtsCI | GGATG | 8 cut(s) | 235, 787, 880, 1237, 2121, 2852, 3052, 3209 |
| BtsIMutI | CAGTG | 4 cut(s) | 1359, 2447, 2510, 2904 |
| BveI | ACCTGC | 1 cut(s) | 807 |
| Cac8I | GCNNGC | 4 cut(s) | 412, 1586, 1801, 2136 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1606, 2587 |
| CciI | TCATGA | 3 cut(s) | 220, 445, 649 |
| Cfr13I | GGNCC | 6 cut(s) | 1972, 2408, 3460, 3593, 3603, 3692 |
| ClaI | ATCGAT | 1 cut(s) | 3512 |
| CseI | GACGC | 2 cut(s) | 979, 1612 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1866, 1901, 3571, 3606 |
| DdeI | CTNAG | 9 cut(s) | 177, 430, 728, 1607, 2267, 2474, 2607, 3320, 3339 |
| DpnI | GATC | 6 cut(s) | 168, 737, 1269, 1281, 3270, 3511 |
| DpnII | GATC | 6 cut(s) | 166, 735, 1267, 1279, 3268, 3509 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3400 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3400 |
| EaeI | YGGCCR | 2 cut(s) | 1797, 1934 |
| Eam1104I | CTCTTC | 2 cut(s) | 2445, 2796 |
| EarI | CTCTTC | 2 cut(s) | 2445, 2796 |
| Eco105I | TACGTA | 1 cut(s) | 3467 |
| Eco130I | CCWWGG | 2 cut(s) | 384, 1227 |
| Eco147I | AGGCCT | 1 cut(s) | 2568 |
| Eco24I | GRGCYC | 1 cut(s) | 175 |
| Eco32I | GATATC | 1 cut(s) | 827 |
| Eco47I | GGWCC | 3 cut(s) | 2408, 3460, 3692 |
| Eco57I | CTGAAG | 5 cut(s) | 1335, 1643, 2145, 2777, 3257 |
| Eco81I | CCTNAGG | 1 cut(s) | 177 |
| Eco88I | CYCGRG | 1 cut(s) | 912 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 131 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1972 |
| EcoRI | GAATTC | 1 cut(s) | 1235 |
| EcoRII | CCWGG | 6 cut(s) | 27, 1536, 1780, 1939, 1965, 2580 |
| EcoRV | GATATC | 1 cut(s) | 827 |
| EcoT14I | CCWWGG | 2 cut(s) | 384, 1227 |
| EcoT22I | ATGCAT | 2 cut(s) | 1183, 2059 |
| EcoT38I | GRGCYC | 1 cut(s) | 175 |
| ErhI | CCWWGG | 2 cut(s) | 384, 1227 |
| Esp3I | CGTCTC | 1 cut(s) | 962 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 34, 66, 84, 116, 1413, 1445 |
| FaqI | GGGAC | 2 cut(s) | 2331, 3543 |
| FauNDI | CATATG | 1 cut(s) | 3865 |
| FblI | GTMKAC | 3 cut(s) | 1366, 2620, 3181 |
| Fnu4HI | GCNGC | 7 cut(s) | 24, 408, 954, 1358, 1937, 2674, 3580 |
| FokI | GGATG | 8 cut(s) | 242, 794, 887, 1244, 2128, 2839, 3059, 3196 |
| FriOI | GRGCYC | 1 cut(s) | 175 |
| Fsp4HI | GCNGC | 7 cut(s) | 24, 408, 954, 1358, 1937, 2674, 3580 |
| FspBI | CTAG | 9 cut(s) | 411, 572, 839, 1548, 2543, 2774, 2891, 3483, 3786 |
| GluI | GCNGC | 7 cut(s) | 24, 408, 954, 1358, 1937, 2674, 3580 |
| GsaI | CCCAGC | 1 cut(s) | 1449 |
| GsuI | CTGGAG | 4 cut(s) | 1724, 1988, 2564, 3768 |
| HapII | CCGG | 2 cut(s) | 2486, 3186 |
| HgaI | GACGC | 2 cut(s) | 979, 1612 |
| HincII | GTYRAC | 4 cut(s) | 466, 2184, 2280, 3662 |
| HindII | GTYRAC | 4 cut(s) | 466, 2184, 2280, 3662 |
| HindIII | AAGCTT | 5 cut(s) | 1586, 1625, 1912, 2985, 3028 |
| HpaII | CCGG | 2 cut(s) | 2486, 3186 |
| Hpy166II | GTNNAC | 9 cut(s) | 349, 466, 1115, 1367, 2184, 2280, 2621, 3182, 3662 |
| Hpy8I | GTNNAC | 9 cut(s) | 349, 466, 1115, 1367, 2184, 2280, 2621, 3182, 3662 |
| HpyCH4III | ACNGT | 8 cut(s) | 656, 2505, 2589, 2846, 2908, 3402, 3540, 3666 |
| HpyCH4IV | ACGT | 1 cut(s) | 3466 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 56, 224, 1874, 2164, 2977, 3316, 3772 |
| HpyF3I | CTNAG | 9 cut(s) | 177, 430, 728, 1607, 2267, 2474, 2607, 3320, 3339 |
| HpySE526I | ACGT | 1 cut(s) | 3466 |
| KpnI | GGTACC | 2 cut(s) | 1537, 3657 |
| Kzo9I | GATC | 6 cut(s) | 166, 735, 1267, 1279, 3268, 3509 |
| LguI | GCTCTTC | 1 cut(s) | 2445 |
| LmnI | GCTCC | 6 cut(s) | 178, 523, 1060, 2155, 2197, 2670 |
| Lsp1109I | GCAGC | 6 cut(s) | 10, 419, 940, 1344, 2660, 3591 |
| MaeI | CTAG | 9 cut(s) | 411, 572, 839, 1548, 2543, 2774, 2891, 3483, 3786 |
| MaeII | ACGT | 1 cut(s) | 3466 |
| MaeIII | GTNAC | 8 cut(s) | 141, 931, 944, 1222, 2198, 2445, 3051, 3295 |
| MalI | GATC | 6 cut(s) | 168, 737, 1269, 1281, 3270, 3511 |
| MboI | GATC | 6 cut(s) | 166, 735, 1267, 1279, 3268, 3509 |
| MfeI | CAATTG | 8 cut(s) | 597, 1509, 1811, 1991, 2187, 2530, 2556, 3160 |
| MflI | RGATCY | 2 cut(s) | 735, 3268 |
| MhlI | GDGCHC | 3 cut(s) | 175, 1057, 1341 |
| MlsI | TGGCCA | 1 cut(s) | 1799 |
| MluNI | TGGCCA | 1 cut(s) | 1799 |
| MlyI | GAGTC | 7 cut(s) | 473, 1722, 2548, 2896, 2903, 3284, 3370 |
| MmeI | TCCRAC | 5 cut(s) | 507, 1696, 2640, 3487, 3872 |
| Mox20I | TGGCCA | 1 cut(s) | 1799 |
| Mph1103I | ATGCAT | 2 cut(s) | 1183, 2059 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1208, 2988, 3363 |
| MscI | TGGCCA | 1 cut(s) | 1799 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3017, 3884 |
| Msp20I | TGGCCA | 1 cut(s) | 1799 |
| MspCI | CTTAAG | 1 cut(s) | 2510 |
| MspI | CCGG | 2 cut(s) | 2486, 3186 |
| MspR9I | CCNGG | 7 cut(s) | 29, 1538, 1782, 1941, 1967, 2582, 3186 |
| MunI | CAATTG | 8 cut(s) | 597, 1509, 1811, 1991, 2187, 2530, 2556, 3160 |
| Mva1269I | GAATGC | 1 cut(s) | 2003 |
| MvaI | CCWGG | 6 cut(s) | 29, 1538, 1782, 1941, 1967, 2582 |
| MvnI | CGCG | 1 cut(s) | 2724 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 56, 224, 1874, 2164, 2977, 3316, 3772 |
| NciI | CCSGG | 1 cut(s) | 3186 |
| NdeI | CATATG | 1 cut(s) | 3865 |
| NdeII | GATC | 6 cut(s) | 166, 735, 1267, 1279, 3268, 3509 |
| NheI | GCTAGC | 1 cut(s) | 410 |
| NlaIV | GGNNCC | 3 cut(s) | 174, 1535, 3655 |
| NmeAIII | GCCGAG | 1 cut(s) | 2838 |
| NmuCI | GTSAC | 4 cut(s) | 931, 944, 2198, 2445 |
| NsiI | ATGCAT | 2 cut(s) | 1183, 2059 |
| NspI | RCATGY | 3 cut(s) | 1295, 1334, 1676 |
| NspV | TTCGAA | 2 cut(s) | 1903, 3408 |
| PagI | TCATGA | 3 cut(s) | 220, 445, 649 |
| PasI | CCCWGGG | 1 cut(s) | 28 |
| PceI | AGGCCT | 1 cut(s) | 2568 |
| PciI | ACATGT | 3 cut(s) | 1291, 1330, 1672 |
| PciSI | GCTCTTC | 1 cut(s) | 2445 |
| PctI | GAATGC | 1 cut(s) | 2003 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1208, 2988, 3363 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3506 |
| PfoI | TCCNGGA | 3 cut(s) | 1780, 1965, 2580 |
| PkrI | GCNGC | 7 cut(s) | 25, 409, 955, 1359, 1938, 2675, 3581 |
| PleI | GAGTC | 7 cut(s) | 473, 1722, 2547, 2895, 2902, 3283, 3370 |
| PpsI | GAGTC | 7 cut(s) | 473, 1722, 2547, 2895, 2902, 3283, 3370 |
| Ppu21I | YACGTR | 1 cut(s) | 3467 |
| PscI | ACATGT | 3 cut(s) | 1291, 1330, 1672 |
| PshBI | ATTAAT | 1 cut(s) | 2420 |
| PsiI | TTATAA | 1 cut(s) | 1593 |
| Psp6I | CCWGG | 6 cut(s) | 27, 1536, 1780, 1939, 1965, 2580 |
| PspFI | CCCAGC | 1 cut(s) | 1445 |
| PspGI | CCWGG | 6 cut(s) | 27, 1536, 1780, 1939, 1965, 2580 |
| PspN4I | GGNNCC | 3 cut(s) | 174, 1535, 3655 |
| PspPI | GGNCC | 6 cut(s) | 1972, 2408, 3460, 3593, 3603, 3692 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 90, 122 |
| PstI | CTGCAG | 1 cut(s) | 3108 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1606, 2587 |
| PsuI | RGATCY | 2 cut(s) | 735, 3268 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3017, 3884 |
| SapI | GCTCTTC | 1 cut(s) | 2445 |
| SatI | GCNGC | 7 cut(s) | 24, 408, 954, 1358, 1937, 2674, 3580 |
| Sau3AI | GATC | 6 cut(s) | 166, 735, 1267, 1279, 3268, 3509 |
| Sau96I | GGNCC | 6 cut(s) | 1972, 2408, 3460, 3593, 3603, 3692 |
| ScaI | AGTACT | 2 cut(s) | 1931, 2780 |
| SchI | GAGTC | 7 cut(s) | 473, 1722, 2548, 2896, 2903, 3284, 3370 |
| ScrFI | CCNGG | 7 cut(s) | 29, 1538, 1782, 1941, 1967, 2582, 3186 |
| SduI | GDGCHC | 3 cut(s) | 175, 1057, 1341 |
| SfcI | CTRYAG | 2 cut(s) | 1598, 3104 |
| SfuI | TTCGAA | 2 cut(s) | 1903, 3408 |
| SinI | GGWCC | 3 cut(s) | 2408, 3460, 3692 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3017, 3884 |
| SmlI | CTYRAG | 7 cut(s) | 1528, 1666, 2150, 2510, 3031, 3272, 3344 |
| SmoI | CTYRAG | 7 cut(s) | 1528, 1666, 2150, 2510, 3031, 3272, 3344 |
| SnaBI | TACGTA | 1 cut(s) | 3467 |
| SseBI | AGGCCT | 1 cut(s) | 2568 |
| SsiI | CCGC | 5 cut(s) | 227, 1937, 2724, 3806, 3827 |
| SspI | AATATT | 4 cut(s) | 925, 1192, 1489, 3154 |
| SspMI | CTAG | 9 cut(s) | 411, 572, 839, 1548, 2543, 2774, 2891, 3483, 3786 |
| StuI | AGGCCT | 1 cut(s) | 2568 |
| StyD4I | CCNGG | 7 cut(s) | 27, 1536, 1780, 1939, 1965, 2580, 3184 |
| StyI | CCWWGG | 2 cut(s) | 384, 1227 |
| TaaI | ACNGT | 8 cut(s) | 656, 2505, 2589, 2846, 2908, 3402, 3540, 3666 |
| TaiI | ACGT | 1 cut(s) | 3469 |
| TaqI | TCGA | 5 cut(s) | 1156, 1327, 1903, 3408, 3512 |
| TaqII | GACCGA | 1 cut(s) | 2433 |
| TatI | WGTACW | 5 cut(s) | 294, 1476, 1929, 2778, 2908 |
| TauI | GCSGC | 1 cut(s) | 1939 |
| TscAI | CASTG | 4 cut(s) | 1359, 2454, 2510, 2911 |
| TseFI | GTSAC | 4 cut(s) | 931, 944, 2198, 2445 |
| TseI | GCWGC | 6 cut(s) | 23, 407, 953, 1357, 2673, 3579 |
| Tsp45I | GTSAC | 4 cut(s) | 931, 944, 2198, 2445 |
| TspGWI | ACGGA | 2 cut(s) | 2230, 2918 |
| TspRI | CASTG | 4 cut(s) | 1359, 2454, 2510, 2911 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3506 |
| Vha464I | CTTAAG | 1 cut(s) | 2510 |
| VpaK11BI | GGWCC | 3 cut(s) | 2408, 3460, 3692 |
| VspI | ATTAAT | 1 cut(s) | 2420 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 131 |
| XbaI | TCTAGA | 3 cut(s) | 1547, 2542, 2890 |
| XceI | RCATGY | 3 cut(s) | 1295, 1334, 1676 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1159 |
| XmiI | GTMKAC | 3 cut(s) | 1366, 2620, 3181 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1208, 2988, 3363 |
| XspI | CTAG | 9 cut(s) | 411, 572, 839, 1548, 2543, 2774, 2891, 3483, 3786 |
| ZrmI | AGTACT | 2 cut(s) | 1931, 2780 |
| Zsp2I | ATGCAT | 2 cut(s) | 1183, 2059 |