Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 107 - 230 | 1.5e-25 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 342 |
| AcsI | RAATTY | 1 cut(s) | 761 |
| AcuI | CTGAAG | 1 cut(s) | 236 |
| AfaI | GTAC | 3 cut(s) | 346, 391, 768 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 69 |
| AflII | CTTAAG | 1 cut(s) | 281 |
| AgsI | TTSAA | 3 cut(s) | 313, 515, 535 |
| AleI | CACNNNNGTG | 1 cut(s) | 304 |
| AluBI | AGCT | 7 cut(s) | 107, 178, 250, 293, 554, 575, 683 |
| AluI | AGCT | 7 cut(s) | 107, 178, 250, 293, 554, 575, 683 |
| Alw21I | GWGCWC | 1 cut(s) | 295 |
| Alw26I | GTCTC | 1 cut(s) | 723 |
| ApeKI | GCWGC | 3 cut(s) | 356, 404, 680 |
| ApoI | RAATTY | 1 cut(s) | 761 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| BanII | GRGCYC | 1 cut(s) | 295 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 657, 689 |
| Bbv12I | GWGCWC | 1 cut(s) | 295 |
| BbvI | GCAGC | 3 cut(s) | 368, 391, 692 |
| BccI | CCATC | 2 cut(s) | 320, 678 |
| BceAI | ACGGC | 1 cut(s) | 279 |
| BclI | TGATCA | 1 cut(s) | 49 |
| BcoDI | GTCTC | 1 cut(s) | 723 |
| BfaI | CTAG | 4 cut(s) | 408, 645, 677, 704 |
| BfrI | CTTAAG | 1 cut(s) | 281 |
| BisI | GCNGC | 3 cut(s) | 357, 405, 681 |
| BlpI | GCTNAGC | 2 cut(s) | 221, 267 |
| BlsI | GCNGC | 3 cut(s) | 358, 406, 682 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 1 cut(s) | 278 |
| BmsI | GCATC | 1 cut(s) | 49 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 221, 267 |
| BsaBI | GATNNNNATC | 1 cut(s) | 48 |
| BsaI | GGTCTC | 1 cut(s) | 723 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 69 |
| Bse1I | ACTGG | 2 cut(s) | 352, 391 |
| Bse8I | GATNNNNATC | 1 cut(s) | 48 |
| BseGI | GGATG | 1 cut(s) | 499 |
| BseJI | GATNNNNATC | 1 cut(s) | 48 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BseMII | CTCAG | 1 cut(s) | 11 |
| BseNI | ACTGG | 2 cut(s) | 352, 391 |
| BseXI | GCAGC | 3 cut(s) | 368, 391, 692 |
| BsgI | GTGCAG | 1 cut(s) | 678 |
| BsiHKAI | GWGCWC | 1 cut(s) | 295 |
| BslFI | GGGAC | 1 cut(s) | 182 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BsmAI | GTCTC | 1 cut(s) | 723 |
| BsmFI | GGGAC | 1 cut(s) | 182 |
| Bso31I | GGTCTC | 1 cut(s) | 723 |
| Bsp1286I | GDGCHC | 1 cut(s) | 295 |
| Bsp143I | GATC | 2 cut(s) | 49, 700 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 221, 267 |
| BspACI | CCGC | 1 cut(s) | 342 |
| BspCNI | CTCAG | 1 cut(s) | 12 |
| BspLI | GGNNCC | 1 cut(s) | 278 |
| BspQI | GCTCTTC | 1 cut(s) | 300 |
| BspTI | CTTAAG | 1 cut(s) | 281 |
| BspTNI | GGTCTC | 1 cut(s) | 723 |
| BsrI | ACTGG | 2 cut(s) | 352, 391 |
| BssMI | GATC | 2 cut(s) | 49, 700 |
| Bst4CI | ACNGT | 1 cut(s) | 32 |
| Bst6I | CTCTTC | 3 cut(s) | 300, 624, 750 |
| BstAFI | CTTAAG | 1 cut(s) | 281 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 443, 686 |
| BstDEI | CTNAG | 5 cut(s) | 20, 65, 221, 246, 267 |
| BstF5I | GGATG | 1 cut(s) | 499 |
| BstKTI | GATC | 2 cut(s) | 52, 703 |
| BstMAI | GTCTC | 1 cut(s) | 723 |
| BstMBI | GATC | 2 cut(s) | 49, 700 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 348, 443, 686 |
| BstNSI | RCATGY | 1 cut(s) | 446 |
| BstV1I | GCAGC | 3 cut(s) | 368, 391, 692 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 306 |
| BtsCI | GGATG | 1 cut(s) | 499 |
| BtsI | GCAGTG | 1 cut(s) | 366 |
| BtsIMutI | CAGTG | 2 cut(s) | 366, 607 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| Csp6I | GTAC | 3 cut(s) | 345, 390, 767 |
| CviAII | CATG | 5 cut(s) | 443, 641, 686, 698, 722 |
| CviQI | GTAC | 3 cut(s) | 345, 390, 767 |
| DdeI | CTNAG | 5 cut(s) | 20, 65, 221, 246, 267 |
| DpnI | GATC | 2 cut(s) | 51, 702 |
| DpnII | GATC | 2 cut(s) | 49, 700 |
| Eam1104I | CTCTTC | 3 cut(s) | 300, 624, 750 |
| EarI | CTCTTC | 3 cut(s) | 300, 624, 750 |
| Ecl136II | GAGCTC | 1 cut(s) | 293 |
| Eco24I | GRGCYC | 1 cut(s) | 295 |
| Eco31I | GGTCTC | 1 cut(s) | 723 |
| Eco32I | GATATC | 1 cut(s) | 598 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| Eco53kI | GAGCTC | 1 cut(s) | 293 |
| Eco57I | CTGAAG | 1 cut(s) | 236 |
| EcoICRI | GAGCTC | 1 cut(s) | 293 |
| EcoO109I | RGGNCCY | 1 cut(s) | 277 |
| EcoRV | GATATC | 1 cut(s) | 598 |
| EcoT38I | GRGCYC | 1 cut(s) | 295 |
| FaeI | CATG | 5 cut(s) | 446, 644, 689, 701, 725 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 305, 337 |
| FaqI | GGGAC | 1 cut(s) | 182 |
| FatI | CATG | 5 cut(s) | 442, 640, 685, 697, 721 |
| FbaI | TGATCA | 1 cut(s) | 49 |
| Fnu4HI | GCNGC | 3 cut(s) | 357, 405, 681 |
| FokI | GGATG | 1 cut(s) | 486 |
| FriOI | GRGCYC | 1 cut(s) | 295 |
| Fsp4HI | GCNGC | 3 cut(s) | 357, 405, 681 |
| FspBI | CTAG | 4 cut(s) | 408, 645, 677, 704 |
| GluI | GCNGC | 3 cut(s) | 357, 405, 681 |
| Hin1II | CATG | 5 cut(s) | 446, 644, 689, 701, 725 |
| HindIII | AAGCTT | 1 cut(s) | 248 |
| HinfI | GANTC | 1 cut(s) | 44 |
| Hpy188I | TCNGA | 4 cut(s) | 21, 49, 88, 255 |
| Hpy188III | TCNNGA | 2 cut(s) | 142, 704 |
| HpyCH4III | ACNGT | 1 cut(s) | 32 |
| HpyCH4V | TGCA | 3 cut(s) | 332, 446, 695 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 348, 443, 686 |
| HpyF3I | CTNAG | 5 cut(s) | 20, 65, 221, 246, 267 |
| Hsp92II | CATG | 5 cut(s) | 446, 644, 689, 701, 725 |
| Ksp22I | TGATCA | 1 cut(s) | 49 |
| Kzo9I | GATC | 2 cut(s) | 49, 700 |
| LguI | GCTCTTC | 1 cut(s) | 300 |
| LmnI | GCTCC | 1 cut(s) | 730 |
| LpnPI | CCDG | 5 cut(s) | 127, 333, 337, 372, 516 |
| Lsp1109I | GCAGC | 3 cut(s) | 368, 391, 692 |
| LweI | GCATC | 1 cut(s) | 49 |
| MaeI | CTAG | 4 cut(s) | 408, 645, 677, 704 |
| MaeIII | GTNAC | 2 cut(s) | 4, 259 |
| MalI | GATC | 2 cut(s) | 51, 702 |
| MboI | GATC | 2 cut(s) | 49, 700 |
| MboII | GAAGA | 7 cut(s) | 118, 287, 325, 611, 617, 665, 767 |
| MhlI | GDGCHC | 1 cut(s) | 295 |
| MluCI | AATT | 5 cut(s) | 76, 92, 241, 542, 761 |
| MnlI | CCTC | 3 cut(s) | 153, 460, 642 |
| MseI | TTAA | 3 cut(s) | 75, 282, 318 |
| MslI | CAYNNNNRTG | 2 cut(s) | 57, 304 |
| MspCI | CTTAAG | 1 cut(s) | 281 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 348, 443, 686 |
| NdeII | GATC | 2 cut(s) | 49, 700 |
| NlaIII | CATG | 5 cut(s) | 446, 644, 689, 701, 725 |
| NlaIV | GGNNCC | 1 cut(s) | 278 |
| NmuCI | GTSAC | 1 cut(s) | 259 |
| NspI | RCATGY | 1 cut(s) | 446 |
| OliI | CACNNNNGTG | 1 cut(s) | 304 |
| PciSI | GCTCTTC | 1 cut(s) | 300 |
| PfeI | GAWTC | 1 cut(s) | 44 |
| PkrI | GCNGC | 3 cut(s) | 358, 406, 682 |
| PpuMI | RGGWCCY | 1 cut(s) | 277 |
| Psp124BI | GAGCTC | 1 cut(s) | 295 |
| Psp5II | RGGWCCY | 1 cut(s) | 277 |
| PspN4I | GGNNCC | 1 cut(s) | 278 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PspPPI | RGGWCCY | 1 cut(s) | 277 |
| RsaI | GTAC | 3 cut(s) | 346, 391, 768 |
| RsaNI | GTAC | 3 cut(s) | 345, 390, 767 |
| RseI | CAYNNNNRTG | 2 cut(s) | 57, 304 |
| SacI | GAGCTC | 1 cut(s) | 295 |
| SapI | GCTCTTC | 1 cut(s) | 300 |
| SaqAI | TTAA | 3 cut(s) | 75, 282, 318 |
| SatI | GCNGC | 3 cut(s) | 357, 405, 681 |
| Sau3AI | GATC | 2 cut(s) | 49, 700 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| SduI | GDGCHC | 1 cut(s) | 295 |
| SetI | ASST | 7 cut(s) | 109, 180, 252, 295, 556, 577, 685 |
| SfaNI | GCATC | 1 cut(s) | 49 |
| SinI | GGWCC | 1 cut(s) | 277 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 57, 304 |
| SmlI | CTYRAG | 1 cut(s) | 281 |
| SmoI | CTYRAG | 1 cut(s) | 281 |
| Sse9I | AATT | 5 cut(s) | 76, 92, 241, 542, 761 |
| SsiI | CCGC | 1 cut(s) | 342 |
| SspMI | CTAG | 4 cut(s) | 408, 645, 677, 704 |
| SstI | GAGCTC | 1 cut(s) | 295 |
| TaaI | ACNGT | 1 cut(s) | 32 |
| TasI | AATT | 5 cut(s) | 76, 92, 241, 542, 761 |
| TfiI | GAWTC | 1 cut(s) | 44 |
| Tru1I | TTAA | 3 cut(s) | 75, 282, 318 |
| Tru9I | TTAA | 3 cut(s) | 75, 282, 318 |
| TscAI | CASTG | 2 cut(s) | 366, 607 |
| TseFI | GTSAC | 1 cut(s) | 259 |
| TseI | GCWGC | 3 cut(s) | 356, 404, 680 |
| Tsp45I | GTSAC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 6 cut(s) | 118, 174, 220, 358, 629, 768 |
| TspRI | CASTG | 2 cut(s) | 366, 607 |
| Vha464I | CTTAAG | 1 cut(s) | 281 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| XapI | RAATTY | 1 cut(s) | 761 |
| XbaI | TCTAGA | 1 cut(s) | 703 |
| XceI | RCATGY | 1 cut(s) | 446 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 20 |
| XspI | CTAG | 4 cut(s) | 408, 645, 677, 704 |