Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 38 - 159 | 6.1e-20 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 517 |
| AciI | CCGC | 3 cut(s) | 6, 260, 517 |
| AclWI | GGATC | 1 cut(s) | 363 |
| AcsI | RAATTY | 1 cut(s) | 196 |
| AfaI | GTAC | 2 cut(s) | 216, 378 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 95, 96, 99 |
| AflIII | ACRYGT | 1 cut(s) | 75 |
| AgsI | TTSAA | 3 cut(s) | 30, 413, 530 |
| AluBI | AGCT | 2 cut(s) | 203, 230 |
| AluI | AGCT | 2 cut(s) | 203, 230 |
| Alw26I | GTCTC | 2 cut(s) | 609, 628 |
| AlwI | GGATC | 1 cut(s) | 363 |
| ApoI | RAATTY | 1 cut(s) | 196 |
| AseI | ATTAAT | 1 cut(s) | 326 |
| AspLEI | GCGC | 1 cut(s) | 472 |
| AsuHPI | GGTGA | 2 cut(s) | 272, 362 |
| BccI | CCATC | 4 cut(s) | 89, 113, 571, 623 |
| BcoDI | GTCTC | 2 cut(s) | 609, 628 |
| BfaI | CTAG | 4 cut(s) | 204, 380, 480, 620 |
| BfmI | CTRYAG | 1 cut(s) | 436 |
| BisI | GCNGC | 1 cut(s) | 518 |
| BlsI | GCNGC | 1 cut(s) | 519 |
| BmiI | GGNNCC | 1 cut(s) | 572 |
| BmsI | GCATC | 2 cut(s) | 481, 561 |
| BpmI | CTGGAG | 2 cut(s) | 557, 606 |
| BsaI | GGTCTC | 1 cut(s) | 609 |
| BsaJI | CCNNGG | 1 cut(s) | 283 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 95, 96, 99 |
| Bse1I | ACTGG | 1 cut(s) | 589 |
| BseDI | CCNNGG | 1 cut(s) | 283 |
| BseGI | GGATG | 1 cut(s) | 301 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 95, 96, 99 |
| BseMII | CTCAG | 5 cut(s) | 240, 332, 354, 512, 539 |
| BseNI | ACTGG | 1 cut(s) | 589 |
| BseRI | GAGGAG | 1 cut(s) | 360 |
| Bsh1236I | CGCG | 1 cut(s) | 517 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 95, 96, 99 |
| BsmAI | GTCTC | 2 cut(s) | 609, 628 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| Bso31I | GGTCTC | 1 cut(s) | 609 |
| Bsp1407I | TGTACA | 1 cut(s) | 214 |
| Bsp143I | GATC | 1 cut(s) | 355 |
| BspACI | CCGC | 3 cut(s) | 6, 260, 517 |
| BspCNI | CTCAG | 5 cut(s) | 239, 333, 355, 511, 540 |
| BspFNI | CGCG | 1 cut(s) | 517 |
| BspLI | GGNNCC | 1 cut(s) | 572 |
| BspPI | GGATC | 1 cut(s) | 363 |
| BspTNI | GGTCTC | 1 cut(s) | 609 |
| BsrGI | TGTACA | 1 cut(s) | 214 |
| BsrI | ACTGG | 1 cut(s) | 589 |
| BssECI | CCNNGG | 1 cut(s) | 283 |
| BssMI | GATC | 1 cut(s) | 355 |
| BssT1I | CCWWGG | 1 cut(s) | 283 |
| Bst4CI | ACNGT | 4 cut(s) | 53, 71, 210, 601 |
| Bst6I | CTCTTC | 1 cut(s) | 57 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 257 |
| BstAUI | TGTACA | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 1 cut(s) | 569 |
| BstDEI | CTNAG | 6 cut(s) | 226, 341, 363, 498, 548, 635 |
| BstF5I | GGATG | 1 cut(s) | 301 |
| BstFNI | CGCG | 1 cut(s) | 517 |
| BstHHI | GCGC | 1 cut(s) | 472 |
| BstKTI | GATC | 1 cut(s) | 358 |
| BstMAI | GTCTC | 2 cut(s) | 609, 628 |
| BstMBI | GATC | 1 cut(s) | 355 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 200, 227, 257, 476, 485 |
| BstNSI | RCATGY | 2 cut(s) | 221, 255 |
| BstSFI | CTRYAG | 1 cut(s) | 436 |
| BstUI | CGCG | 1 cut(s) | 517 |
| BstX2I | RGATCY | 1 cut(s) | 355 |
| BstYI | RGATCY | 1 cut(s) | 355 |
| BtsCI | GGATG | 1 cut(s) | 301 |
| BtsIMutI | CAGTG | 1 cut(s) | 76 |
| Cac8I | GCNNGC | 1 cut(s) | 569 |
| CfoI | GCGC | 1 cut(s) | 472 |
| Csp6I | GTAC | 2 cut(s) | 215, 377 |
| CviAII | CATG | 3 cut(s) | 218, 252, 400 |
| CviJI | RGCY | 9 cut(s) | 47, 103, 125, 203, 230, 496, 542, 571, 581 |
| CviKI_1 | RGCY | 9 cut(s) | 47, 103, 125, 203, 230, 496, 542, 571, 581 |
| CviQI | GTAC | 2 cut(s) | 215, 377 |
| DdeI | CTNAG | 6 cut(s) | 226, 341, 363, 498, 548, 635 |
| DpnI | GATC | 1 cut(s) | 357 |
| DpnII | GATC | 1 cut(s) | 355 |
| DraI | TTTAAA | 1 cut(s) | 234 |
| Eam1104I | CTCTTC | 1 cut(s) | 57 |
| EarI | CTCTTC | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 283 |
| Eco31I | GGTCTC | 1 cut(s) | 609 |
| EcoT14I | CCWWGG | 1 cut(s) | 283 |
| ErhI | CCWWGG | 1 cut(s) | 283 |
| FaeI | CATG | 3 cut(s) | 221, 255, 403 |
| FaiI | YATR | 7 cut(s) | 219, 239, 253, 318, 401, 438, 649 |
| FatI | CATG | 3 cut(s) | 217, 251, 399 |
| FauI | CCCGC | 1 cut(s) | 253 |
| Fnu4HI | GCNGC | 1 cut(s) | 518 |
| FokI | GGATG | 1 cut(s) | 308 |
| Fsp4HI | GCNGC | 1 cut(s) | 518 |
| FspBI | CTAG | 4 cut(s) | 204, 380, 480, 620 |
| GlaI | GCGC | 1 cut(s) | 471 |
| GluI | GCNGC | 1 cut(s) | 518 |
| GsuI | CTGGAG | 2 cut(s) | 557, 606 |
| HhaI | GCGC | 1 cut(s) | 472 |
| Hin1II | CATG | 3 cut(s) | 221, 255, 403 |
| Hin6I | GCGC | 1 cut(s) | 470 |
| HinP1I | GCGC | 1 cut(s) | 470 |
| HinfI | GANTC | 5 cut(s) | 189, 504, 512, 534, 590 |
| HphI | GGTGA | 2 cut(s) | 272, 362 |
| Hpy188I | TCNGA | 4 cut(s) | 364, 501, 557, 628 |
| Hpy188III | TCNNGA | 2 cut(s) | 574, 614 |
| HpyAV | CCTTC | 1 cut(s) | 524 |
| HpyCH4III | ACNGT | 4 cut(s) | 53, 71, 210, 601 |
| HpyCH4IV | ACGT | 1 cut(s) | 77 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 200, 227, 257, 476, 485 |
| HpyF3I | CTNAG | 6 cut(s) | 226, 341, 363, 498, 548, 635 |
| HpySE526I | ACGT | 1 cut(s) | 77 |
| Hsp92II | CATG | 3 cut(s) | 221, 255, 403 |
| HspAI | GCGC | 1 cut(s) | 470 |
| Kzo9I | GATC | 1 cut(s) | 355 |
| LmnI | GCTCC | 1 cut(s) | 576 |
| LpnPI | CCDG | 5 cut(s) | 493, 528, 553, 570, 587 |
| LweI | GCATC | 2 cut(s) | 481, 561 |
| MaeI | CTAG | 4 cut(s) | 204, 380, 480, 620 |
| MaeII | ACGT | 1 cut(s) | 77 |
| MaeIII | GTNAC | 3 cut(s) | 39, 71, 267 |
| MalI | GATC | 1 cut(s) | 357 |
| MboI | GATC | 1 cut(s) | 355 |
| MboII | GAAGA | 2 cut(s) | 74, 395 |
| MflI | RGATCY | 1 cut(s) | 355 |
| MluCI | AATT | 2 cut(s) | 196, 327 |
| MlyI | GAGTC | 3 cut(s) | 513, 521, 543 |
| MmeI | TCCRAC | 1 cut(s) | 269 |
| MseI | TTAA | 2 cut(s) | 233, 326 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvnI | CGCG | 1 cut(s) | 517 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 200, 227, 257, 476, 485 |
| NdeII | GATC | 1 cut(s) | 355 |
| NlaIII | CATG | 3 cut(s) | 221, 255, 403 |
| NlaIV | GGNNCC | 1 cut(s) | 572 |
| NmuCI | GTSAC | 1 cut(s) | 71 |
| NspI | RCATGY | 2 cut(s) | 221, 255 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PfeI | GAWTC | 2 cut(s) | 189, 590 |
| PflFI | GACNNNGTC | 1 cut(s) | 620 |
| PkrI | GCNGC | 1 cut(s) | 519 |
| PleI | GAGTC | 3 cut(s) | 512, 520, 542 |
| PpsI | GAGTC | 3 cut(s) | 512, 520, 542 |
| PshBI | ATTAAT | 1 cut(s) | 326 |
| PspN4I | GGNNCC | 1 cut(s) | 572 |
| PsuI | RGATCY | 1 cut(s) | 355 |
| PsyI | GACNNNGTC | 1 cut(s) | 620 |
| RsaI | GTAC | 2 cut(s) | 216, 378 |
| RsaNI | GTAC | 2 cut(s) | 215, 377 |
| SaqAI | TTAA | 2 cut(s) | 233, 326 |
| SatI | GCNGC | 1 cut(s) | 518 |
| Sau3AI | GATC | 1 cut(s) | 355 |
| SchI | GAGTC | 3 cut(s) | 513, 521, 543 |
| SfaNI | GCATC | 2 cut(s) | 481, 561 |
| SfcI | CTRYAG | 1 cut(s) | 436 |
| Sse9I | AATT | 2 cut(s) | 196, 327 |
| SsiI | CCGC | 3 cut(s) | 6, 260, 517 |
| SspI | AATATT | 2 cut(s) | 15, 115 |
| SspMI | CTAG | 4 cut(s) | 204, 380, 480, 620 |
| StyI | CCWWGG | 1 cut(s) | 283 |
| TaaI | ACNGT | 4 cut(s) | 53, 71, 210, 601 |
| TaiI | ACGT | 1 cut(s) | 80 |
| TaqI | TCGA | 1 cut(s) | 613 |
| TasI | AATT | 2 cut(s) | 196, 327 |
| TatI | WGTACW | 1 cut(s) | 214 |
| TauI | GCSGC | 1 cut(s) | 520 |
| TfiI | GAWTC | 2 cut(s) | 189, 590 |
| Tru1I | TTAA | 2 cut(s) | 233, 326 |
| Tru9I | TTAA | 2 cut(s) | 233, 326 |
| TscAI | CASTG | 1 cut(s) | 76 |
| TseFI | GTSAC | 1 cut(s) | 71 |
| Tsp45I | GTSAC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 1 cut(s) | 75 |
| TspGWI | ACGGA | 1 cut(s) | 308 |
| TspRI | CASTG | 1 cut(s) | 76 |
| Tth111I | GACNNNGTC | 1 cut(s) | 620 |
| VspI | ATTAAT | 1 cut(s) | 326 |
| XapI | RAATTY | 1 cut(s) | 196 |
| XceI | RCATGY | 2 cut(s) | 221, 255 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 581 |
| XspI | CTAG | 4 cut(s) | 204, 380, 480, 620 |