ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cupin_3 | PF05899 | 77 - 150 | 3.5e-25 | EutQ-like cupin domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 367 |
| AcoI | YGGCCR | 2 cut(s) | 174, 251 |
| AcsI | RAATTY | 1 cut(s) | 278 |
| AcuI | CTGAAG | 1 cut(s) | 168 |
| AfaI | GTAC | 1 cut(s) | 339 |
| AgsI | TTSAA | 3 cut(s) | 14, 203, 431 |
| AjnI | CCWGG | 2 cut(s) | 115, 416 |
| AluBI | AGCT | 2 cut(s) | 235, 453 |
| AluI | AGCT | 2 cut(s) | 235, 453 |
| Alw26I | GTCTC | 1 cut(s) | 299 |
| AlwI | GGATC | 1 cut(s) | 367 |
| AoxI | GGCC | 2 cut(s) | 174, 251 |
| ApoI | RAATTY | 1 cut(s) | 278 |
| AspS9I | GGNCC | 2 cut(s) | 119, 269 |
| AsuC2I | CCSGG | 1 cut(s) | 142 |
| AsuHPI | GGTGA | 4 cut(s) | 235, 343, 392, 406 |
| AvaII | GGWCC | 2 cut(s) | 119, 269 |
| BalI | TGGCCA | 2 cut(s) | 176, 253 |
| BciT130I | CCWGG | 2 cut(s) | 117, 418 |
| BcnI | CCSGG | 1 cut(s) | 142 |
| BcoDI | GTCTC | 1 cut(s) | 299 |
| BfmI | CTRYAG | 1 cut(s) | 300 |
| Bme1390I | CCNGG | 3 cut(s) | 117, 142, 418 |
| Bme18I | GGWCC | 2 cut(s) | 119, 269 |
| BmgT120I | GGNCC | 2 cut(s) | 119, 269 |
| BmrFI | CCNGG | 3 cut(s) | 117, 142, 418 |
| BmsI | GCATC | 1 cut(s) | 68 |
| BpuMI | CCSGG | 1 cut(s) | 142 |
| BsaJI | CCNNGG | 2 cut(s) | 284, 417 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 183, 213 |
| Bse1I | ACTGG | 2 cut(s) | 32, 132 |
| BseBI | CCWGG | 2 cut(s) | 117, 418 |
| BseDI | CCNNGG | 2 cut(s) | 284, 417 |
| BseGI | GGATG | 1 cut(s) | 427 |
| BseMII | CTCAG | 2 cut(s) | 69, 222 |
| BseNI | ACTGG | 2 cut(s) | 32, 132 |
| BshFI | GGCC | 2 cut(s) | 176, 253 |
| BsiSI | CCGG | 1 cut(s) | 141 |
| BslFI | GGGAC | 1 cut(s) | 68 |
| BsmAI | GTCTC | 1 cut(s) | 299 |
| BsmFI | GGGAC | 1 cut(s) | 68 |
| BsnI | GGCC | 2 cut(s) | 176, 253 |
| Bsp1407I | TGTACA | 1 cut(s) | 337 |
| Bsp143I | GATC | 1 cut(s) | 359 |
| Bsp19I | CCATGG | 1 cut(s) | 284 |
| BspANI | GGCC | 2 cut(s) | 176, 253 |
| BspCNI | CTCAG | 2 cut(s) | 68, 223 |
| BspPI | GGATC | 1 cut(s) | 367 |
| BsrGI | TGTACA | 1 cut(s) | 337 |
| BsrI | ACTGG | 2 cut(s) | 32, 132 |
| BssECI | CCNNGG | 2 cut(s) | 284, 417 |
| BssMI | GATC | 1 cut(s) | 359 |
| BssT1I | CCWWGG | 1 cut(s) | 284 |
| Bst2UI | CCWGG | 2 cut(s) | 117, 418 |
| BstAUI | TGTACA | 1 cut(s) | 337 |
| BstDEI | CTNAG | 2 cut(s) | 55, 231 |
| BstDSI | CCRYGG | 1 cut(s) | 284 |
| BstEII | GGTNACC | 1 cut(s) | 412 |
| BstF5I | GGATG | 1 cut(s) | 427 |
| BstKTI | GATC | 1 cut(s) | 362 |
| BstMAI | GTCTC | 1 cut(s) | 299 |
| BstMBI | GATC | 1 cut(s) | 359 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 37 |
| BstNI | CCWGG | 2 cut(s) | 117, 418 |
| BstPI | GGTNACC | 1 cut(s) | 412 |
| BstSCI | CCNGG | 3 cut(s) | 115, 140, 416 |
| BstSFI | CTRYAG | 1 cut(s) | 300 |
| BstX2I | RGATCY | 1 cut(s) | 359 |
| BstYI | RGATCY | 1 cut(s) | 359 |
| BsuRI | GGCC | 2 cut(s) | 176, 253 |
| BtgI | CCRYGG | 1 cut(s) | 284 |
| BtsCI | GGATG | 1 cut(s) | 427 |
| BtsI | GCAGTG | 1 cut(s) | 294 |
| BtsIMutI | CAGTG | 1 cut(s) | 294 |
| Cfr13I | GGNCC | 2 cut(s) | 119, 269 |
| Csp6I | GTAC | 1 cut(s) | 338 |
| CviAII | CATG | 4 cut(s) | 7, 249, 285, 353 |
| CviJI | RGCY | 6 cut(s) | 31, 176, 235, 253, 377, 453 |
| CviKI_1 | RGCY | 6 cut(s) | 31, 176, 235, 253, 377, 453 |
| CviQI | GTAC | 1 cut(s) | 338 |
| DdeI | CTNAG | 2 cut(s) | 55, 231 |
| DpnI | GATC | 1 cut(s) | 361 |
| DpnII | GATC | 1 cut(s) | 359 |
| EaeI | YGGCCR | 2 cut(s) | 174, 251 |
| Eco130I | CCWWGG | 1 cut(s) | 284 |
| Eco47I | GGWCC | 2 cut(s) | 119, 269 |
| Eco57I | CTGAAG | 1 cut(s) | 168 |
| Eco91I | GGTNACC | 1 cut(s) | 412 |
| EcoO65I | GGTNACC | 1 cut(s) | 412 |
| EcoRII | CCWGG | 2 cut(s) | 115, 416 |
| EcoT14I | CCWWGG | 1 cut(s) | 284 |
| ErhI | CCWWGG | 1 cut(s) | 284 |
| FaeI | CATG | 4 cut(s) | 10, 252, 288, 356 |
| FaiI | YATR | 6 cut(s) | 8, 250, 286, 311, 354, 450 |
| FaqI | GGGAC | 1 cut(s) | 68 |
| FatI | CATG | 4 cut(s) | 6, 248, 284, 352 |
| FokI | GGATG | 1 cut(s) | 434 |
| HaeIII | GGCC | 2 cut(s) | 176, 253 |
| HapII | CCGG | 1 cut(s) | 141 |
| Hin1II | CATG | 4 cut(s) | 10, 252, 288, 356 |
| HinfI | GANTC | 3 cut(s) | 192, 208, 240 |
| HpaII | CCGG | 1 cut(s) | 141 |
| HphI | GGTGA | 4 cut(s) | 235, 343, 392, 406 |
| Hpy166II | GTNNAC | 1 cut(s) | 439 |
| Hpy188I | TCNGA | 1 cut(s) | 148 |
| Hpy188III | TCNNGA | 1 cut(s) | 161 |
| Hpy8I | GTNNAC | 1 cut(s) | 439 |
| HpyAV | CCTTC | 4 cut(s) | 322, 350, 403, 425 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 37 |
| HpyF3I | CTNAG | 2 cut(s) | 55, 231 |
| Hsp92II | CATG | 4 cut(s) | 10, 252, 288, 356 |
| Kzo9I | GATC | 1 cut(s) | 359 |
| LpnPI | CCDG | 8 cut(s) | 45, 102, 129, 145, 154, 363, 403, 430 |
| LweI | GCATC | 1 cut(s) | 68 |
| MaeIII | GTNAC | 2 cut(s) | 241, 412 |
| MalI | GATC | 1 cut(s) | 361 |
| MboI | GATC | 1 cut(s) | 359 |
| MboII | GAAGA | 1 cut(s) | 161 |
| MflI | RGATCY | 1 cut(s) | 359 |
| MlsI | TGGCCA | 2 cut(s) | 176, 253 |
| MluCI | AATT | 5 cut(s) | 14, 75, 103, 278, 342 |
| MluNI | TGGCCA | 2 cut(s) | 176, 253 |
| MlyI | GAGTC | 2 cut(s) | 201, 249 |
| MmeI | TCCRAC | 1 cut(s) | 236 |
| MnlI | CCTC | 4 cut(s) | 56, 96, 110, 148 |
| Mox20I | TGGCCA | 2 cut(s) | 176, 253 |
| MscI | TGGCCA | 2 cut(s) | 176, 253 |
| MseI | TTAA | 1 cut(s) | 36 |
| Msp20I | TGGCCA | 2 cut(s) | 176, 253 |
| MspI | CCGG | 1 cut(s) | 141 |
| MspR9I | CCNGG | 3 cut(s) | 117, 142, 418 |
| MvaI | CCWGG | 2 cut(s) | 117, 418 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 37 |
| NciI | CCSGG | 1 cut(s) | 142 |
| NcoI | CCATGG | 1 cut(s) | 284 |
| NdeII | GATC | 1 cut(s) | 359 |
| NlaIII | CATG | 4 cut(s) | 10, 252, 288, 356 |
| NmuCI | GTSAC | 2 cut(s) | 241, 412 |
| PfeI | GAWTC | 1 cut(s) | 208 |
| PleI | GAGTC | 2 cut(s) | 200, 248 |
| PpsI | GAGTC | 2 cut(s) | 200, 248 |
| Psp6I | CCWGG | 2 cut(s) | 115, 416 |
| PspEI | GGTNACC | 1 cut(s) | 412 |
| PspGI | CCWGG | 2 cut(s) | 115, 416 |
| PspPI | GGNCC | 2 cut(s) | 119, 269 |
| PsuI | RGATCY | 1 cut(s) | 359 |
| RsaI | GTAC | 1 cut(s) | 339 |
| RsaNI | GTAC | 1 cut(s) | 338 |
| SaqAI | TTAA | 1 cut(s) | 36 |
| Sau3AI | GATC | 1 cut(s) | 359 |
| Sau96I | GGNCC | 2 cut(s) | 119, 269 |
| SchI | GAGTC | 2 cut(s) | 201, 249 |
| ScrFI | CCNGG | 3 cut(s) | 117, 142, 418 |
| SetI | ASST | 6 cut(s) | 201, 237, 333, 414, 419, 455 |
| SfaNI | GCATC | 1 cut(s) | 68 |
| SfcI | CTRYAG | 1 cut(s) | 300 |
| SinI | GGWCC | 2 cut(s) | 119, 269 |
| Sse9I | AATT | 5 cut(s) | 14, 75, 103, 278, 342 |
| StyD4I | CCNGG | 3 cut(s) | 115, 140, 416 |
| StyI | CCWWGG | 1 cut(s) | 284 |
| TasI | AATT | 5 cut(s) | 14, 75, 103, 278, 342 |
| TatI | WGTACW | 1 cut(s) | 337 |
| TfiI | GAWTC | 1 cut(s) | 208 |
| Tru1I | TTAA | 1 cut(s) | 36 |
| Tru9I | TTAA | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 301 |
| TseFI | GTSAC | 2 cut(s) | 241, 412 |
| Tsp45I | GTSAC | 2 cut(s) | 241, 412 |
| TspDTI | ATGAA | 2 cut(s) | 369, 422 |
| TspRI | CASTG | 1 cut(s) | 301 |
| VpaK11BI | GGWCC | 2 cut(s) | 119, 269 |
| XapI | RAATTY | 1 cut(s) | 278 |