Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 19 - 140 | 2.3e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 203 |
| AccII | CGCG | 3 cut(s) | 137, 173, 401 |
| AciI | CCGC | 3 cut(s) | 137, 171, 203 |
| AclWI | GGATC | 2 cut(s) | 242, 306 |
| AcuI | CTGAAG | 1 cut(s) | 141 |
| AfaI | GTAC | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 38 |
| AgsI | TTSAA | 3 cut(s) | 178, 191, 356 |
| AluBI | AGCT | 1 cut(s) | 68 |
| AluI | AGCT | 1 cut(s) | 68 |
| AlwI | GGATC | 2 cut(s) | 242, 306 |
| AoxI | GGCC | 1 cut(s) | 149 |
| ApeKI | GCWGC | 2 cut(s) | 9, 275 |
| AspLEI | GCGC | 1 cut(s) | 415 |
| AspS9I | GGNCC | 1 cut(s) | 150 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 215 |
| BbvI | GCAGC | 2 cut(s) | 21, 262 |
| BceAI | ACGGC | 2 cut(s) | 100, 363 |
| BfaI | CTAG | 1 cut(s) | 423 |
| BfmI | CTRYAG | 1 cut(s) | 379 |
| BisI | GCNGC | 3 cut(s) | 10, 138, 276 |
| BlsI | GCNGC | 3 cut(s) | 11, 139, 277 |
| BmgT120I | GGNCC | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 4 cut(s) | 35, 73, 226, 306 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 38 |
| BseDI | CCNNGG | 4 cut(s) | 35, 73, 226, 306 |
| BseGI | GGATG | 1 cut(s) | 486 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 38 |
| BseXI | GCAGC | 2 cut(s) | 21, 262 |
| Bsh1236I | CGCG | 3 cut(s) | 137, 173, 401 |
| BshFI | GGCC | 1 cut(s) | 151 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 38 |
| BsnI | GGCC | 1 cut(s) | 151 |
| Bsp1407I | TGTACA | 1 cut(s) | 157 |
| Bsp143I | GATC | 2 cut(s) | 234, 298 |
| Bsp68I | TCGCGA | 1 cut(s) | 401 |
| BspACI | CCGC | 3 cut(s) | 137, 171, 203 |
| BspANI | GGCC | 1 cut(s) | 151 |
| BspFNI | CGCG | 3 cut(s) | 137, 173, 401 |
| BspPI | GGATC | 2 cut(s) | 242, 306 |
| BsrBI | CCGCTC | 1 cut(s) | 203 |
| BsrGI | TGTACA | 1 cut(s) | 157 |
| BssECI | CCNNGG | 4 cut(s) | 35, 73, 226, 306 |
| BssMI | GATC | 2 cut(s) | 234, 298 |
| BssT1I | CCWWGG | 1 cut(s) | 226 |
| BstAUI | TGTACA | 1 cut(s) | 157 |
| BstDSI | CCRYGG | 2 cut(s) | 35, 73 |
| BstF5I | GGATG | 1 cut(s) | 486 |
| BstFNI | CGCG | 3 cut(s) | 137, 173, 401 |
| BstHHI | GCGC | 1 cut(s) | 415 |
| BstKTI | GATC | 2 cut(s) | 237, 301 |
| BstMBI | GATC | 2 cut(s) | 234, 298 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 143, 170, 200, 419 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstSFI | CTRYAG | 1 cut(s) | 379 |
| BstUI | CGCG | 3 cut(s) | 137, 173, 401 |
| BstV1I | GCAGC | 2 cut(s) | 21, 262 |
| BstX2I | RGATCY | 1 cut(s) | 298 |
| BstYI | RGATCY | 1 cut(s) | 298 |
| BsuRI | GGCC | 1 cut(s) | 151 |
| BtgI | CCRYGG | 2 cut(s) | 35, 73 |
| BtsCI | GGATG | 1 cut(s) | 486 |
| BtsI | GCAGTG | 1 cut(s) | 94 |
| BtsIMutI | CAGTG | 1 cut(s) | 94 |
| BtuMI | TCGCGA | 1 cut(s) | 401 |
| CfoI | GCGC | 1 cut(s) | 415 |
| Cfr13I | GGNCC | 1 cut(s) | 150 |
| Csp6I | GTAC | 1 cut(s) | 158 |
| CviAII | CATG | 1 cut(s) | 161 |
| CviJI | RGCY | 5 cut(s) | 46, 68, 140, 151, 350 |
| CviKI_1 | RGCY | 5 cut(s) | 46, 68, 140, 151, 350 |
| CviQI | GTAC | 1 cut(s) | 158 |
| DpnI | GATC | 2 cut(s) | 236, 300 |
| DpnII | GATC | 2 cut(s) | 234, 298 |
| Eco130I | CCWWGG | 1 cut(s) | 226 |
| Eco57I | CTGAAG | 1 cut(s) | 141 |
| EcoO109I | RGGNCCY | 1 cut(s) | 150 |
| EcoT14I | CCWWGG | 1 cut(s) | 226 |
| ErhI | CCWWGG | 1 cut(s) | 226 |
| FaeI | CATG | 1 cut(s) | 164 |
| FaiI | YATR | 9 cut(s) | 162, 182, 340, 342, 344, 381, 434, 499, 515 |
| FatI | CATG | 1 cut(s) | 160 |
| FauI | CCCGC | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 3 cut(s) | 10, 138, 276 |
| FokI | GGATG | 1 cut(s) | 493 |
| Fsp4HI | GCNGC | 3 cut(s) | 10, 138, 276 |
| FspBI | CTAG | 1 cut(s) | 423 |
| GlaI | GCGC | 1 cut(s) | 414 |
| GluI | GCNGC | 3 cut(s) | 10, 138, 276 |
| HaeIII | GGCC | 1 cut(s) | 151 |
| HhaI | GCGC | 1 cut(s) | 415 |
| Hin1II | CATG | 1 cut(s) | 164 |
| Hin6I | GCGC | 1 cut(s) | 413 |
| HinP1I | GCGC | 1 cut(s) | 413 |
| HinfI | GANTC | 3 cut(s) | 132, 257, 403 |
| HphI | GGTGA | 2 cut(s) | 92, 215 |
| Hpy166II | GTNNAC | 1 cut(s) | 32 |
| Hpy188I | TCNGA | 1 cut(s) | 307 |
| Hpy188III | TCNNGA | 2 cut(s) | 400, 478 |
| Hpy8I | GTNNAC | 1 cut(s) | 32 |
| HpyAV | CCTTC | 2 cut(s) | 36, 116 |
| HpyCH4V | TGCA | 1 cut(s) | 283 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 143, 170, 200, 419 |
| Hsp92II | CATG | 1 cut(s) | 164 |
| HspAI | GCGC | 1 cut(s) | 413 |
| Kzo9I | GATC | 2 cut(s) | 234, 298 |
| LmnI | GCTCC | 1 cut(s) | 65 |
| LpnPI | CCDG | 4 cut(s) | 293, 302, 463, 479 |
| Lsp1109I | GCAGC | 2 cut(s) | 21, 262 |
| MaeI | CTAG | 1 cut(s) | 423 |
| MaeIII | GTNAC | 2 cut(s) | 13, 80 |
| MalI | GATC | 2 cut(s) | 236, 300 |
| MbiI | CCGCTC | 1 cut(s) | 203 |
| MboI | GATC | 2 cut(s) | 234, 298 |
| MboII | GAAGA | 1 cut(s) | 338 |
| MflI | RGATCY | 1 cut(s) | 298 |
| MluCI | AATT | 1 cut(s) | 96 |
| MmeI | TCCRAC | 1 cut(s) | 212 |
| MnlI | CCTC | 6 cut(s) | 281, 289, 301, 436, 450, 486 |
| MseI | TTAA | 2 cut(s) | 48, 363 |
| MvnI | CGCG | 3 cut(s) | 137, 173, 401 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 143, 170, 200, 419 |
| NdeII | GATC | 2 cut(s) | 234, 298 |
| NlaIII | CATG | 1 cut(s) | 164 |
| NmuCI | GTSAC | 1 cut(s) | 80 |
| NruI | TCGCGA | 1 cut(s) | 401 |
| NspI | RCATGY | 1 cut(s) | 164 |
| PfeI | GAWTC | 3 cut(s) | 132, 257, 403 |
| PkrI | GCNGC | 3 cut(s) | 11, 139, 277 |
| PspPI | GGNCC | 1 cut(s) | 150 |
| PsuI | RGATCY | 1 cut(s) | 298 |
| RruI | TCGCGA | 1 cut(s) | 401 |
| RsaI | GTAC | 1 cut(s) | 159 |
| RsaNI | GTAC | 1 cut(s) | 158 |
| SaqAI | TTAA | 2 cut(s) | 48, 363 |
| SatI | GCNGC | 3 cut(s) | 10, 138, 276 |
| Sau3AI | GATC | 2 cut(s) | 234, 298 |
| Sau96I | GGNCC | 1 cut(s) | 150 |
| SetI | ASST | 8 cut(s) | 70, 127, 232, 292, 312, 321, 420, 447 |
| SfcI | CTRYAG | 1 cut(s) | 379 |
| Sse9I | AATT | 1 cut(s) | 96 |
| SsiI | CCGC | 3 cut(s) | 137, 171, 203 |
| SspI | AATATT | 1 cut(s) | 367 |
| SspMI | CTAG | 1 cut(s) | 423 |
| StyI | CCWWGG | 1 cut(s) | 226 |
| TaqI | TCGA | 1 cut(s) | 237 |
| TasI | AATT | 1 cut(s) | 96 |
| TatI | WGTACW | 1 cut(s) | 157 |
| TauI | GCSGC | 1 cut(s) | 140 |
| TfiI | GAWTC | 3 cut(s) | 132, 257, 403 |
| Tru1I | TTAA | 2 cut(s) | 48, 363 |
| Tru9I | TTAA | 2 cut(s) | 48, 363 |
| TscAI | CASTG | 1 cut(s) | 94 |
| TseFI | GTSAC | 1 cut(s) | 80 |
| TseI | GCWGC | 2 cut(s) | 9, 275 |
| Tsp45I | GTSAC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 2 cut(s) | 62, 78 |
| TspRI | CASTG | 1 cut(s) | 94 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XspI | CTAG | 1 cut(s) | 423 |