Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 78 | 6.4e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 2 cut(s) | 33, 310 |
| AflIII | ACRYGT | 1 cut(s) | 184 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 69 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AluBI | AGCT | 4 cut(s) | 200, 224, 233, 291 |
| AluI | AGCT | 4 cut(s) | 200, 224, 233, 291 |
| Alw26I | GTCTC | 3 cut(s) | 56, 104, 175 |
| ApeKI | GCWGC | 2 cut(s) | 14, 209 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 173, 206 |
| BbvI | GCAGC | 1 cut(s) | 196 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BcoDI | GTCTC | 3 cut(s) | 56, 104, 175 |
| BfaI | CTAG | 2 cut(s) | 221, 230 |
| BisI | GCNGC | 2 cut(s) | 15, 210 |
| BlsI | GCNGC | 2 cut(s) | 16, 211 |
| Bme1390I | CCNGG | 1 cut(s) | 26 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 69 |
| BmrFI | CCNGG | 1 cut(s) | 26 |
| BpuEI | CTTGAG | 1 cut(s) | 199 |
| BsaJI | CCNNGG | 2 cut(s) | 24, 120 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 2 cut(s) | 24, 120 |
| BseGI | GGATG | 2 cut(s) | 116, 165 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| BseXI | GCAGC | 1 cut(s) | 196 |
| BslFI | GGGAC | 1 cut(s) | 257 |
| BsmAI | GTCTC | 3 cut(s) | 56, 104, 175 |
| BsmFI | GGGAC | 1 cut(s) | 257 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BssECI | CCNNGG | 2 cut(s) | 24, 120 |
| BssT1I | CCWWGG | 1 cut(s) | 120 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 1 cut(s) | 36 |
| BstDEI | CTNAG | 1 cut(s) | 99 |
| BstF5I | GGATG | 2 cut(s) | 116, 165 |
| BstMAI | GTCTC | 3 cut(s) | 56, 104, 175 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 206, 230 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstNSI | RCATGY | 1 cut(s) | 188 |
| BstSCI | CCNGG | 1 cut(s) | 24 |
| BstV1I | GCAGC | 1 cut(s) | 196 |
| BtsCI | GGATG | 2 cut(s) | 116, 165 |
| Csp6I | GTAC | 2 cut(s) | 32, 309 |
| CviAII | CATG | 2 cut(s) | 185, 258 |
| CviJI | RGCY | 8 cut(s) | 5, 14, 200, 209, 224, 233, 268, 291 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 14, 200, 209, 224, 233, 268, 291 |
| CviQI | GTAC | 2 cut(s) | 32, 309 |
| DdeI | CTNAG | 1 cut(s) | 99 |
| DriI | GACNNNNNGTC | 1 cut(s) | 69 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 69 |
| Eco130I | CCWWGG | 1 cut(s) | 120 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| EcoT14I | CCWWGG | 1 cut(s) | 120 |
| ErhI | CCWWGG | 1 cut(s) | 120 |
| FaeI | CATG | 2 cut(s) | 188, 261 |
| FaiI | YATR | 6 cut(s) | 56, 87, 186, 206, 216, 259 |
| FaqI | GGGAC | 1 cut(s) | 257 |
| FatI | CATG | 2 cut(s) | 184, 257 |
| Fnu4HI | GCNGC | 2 cut(s) | 15, 210 |
| FokI | GGATG | 2 cut(s) | 103, 172 |
| Fsp4HI | GCNGC | 2 cut(s) | 15, 210 |
| FspBI | CTAG | 2 cut(s) | 221, 230 |
| GluI | GCNGC | 2 cut(s) | 15, 210 |
| Hin1II | CATG | 2 cut(s) | 188, 261 |
| HindIII | AAGCTT | 1 cut(s) | 289 |
| HinfI | GANTC | 1 cut(s) | 95 |
| Hpy188I | TCNGA | 2 cut(s) | 75, 100 |
| Hpy188III | TCNNGA | 1 cut(s) | 194 |
| HpyCH4III | ACNGT | 1 cut(s) | 36 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 206, 230 |
| HpyF3I | CTNAG | 1 cut(s) | 99 |
| Hsp92II | CATG | 2 cut(s) | 188, 261 |
| LpnPI | CCDG | 3 cut(s) | 11, 38, 291 |
| Lsp1109I | GCAGC | 1 cut(s) | 196 |
| MaeI | CTAG | 2 cut(s) | 221, 230 |
| MboII | GAAGA | 1 cut(s) | 234 |
| MlyI | GAGTC | 1 cut(s) | 104 |
| MnlI | CCTC | 4 cut(s) | 94, 100, 130, 285 |
| MseI | TTAA | 2 cut(s) | 249, 316 |
| MspR9I | CCNGG | 1 cut(s) | 26 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 206, 230 |
| NlaIII | CATG | 2 cut(s) | 188, 261 |
| NspI | RCATGY | 1 cut(s) | 188 |
| PciI | ACATGT | 1 cut(s) | 184 |
| PkrI | GCNGC | 2 cut(s) | 16, 211 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| PscI | ACATGT | 1 cut(s) | 184 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| RsaI | GTAC | 2 cut(s) | 33, 310 |
| RsaNI | GTAC | 2 cut(s) | 32, 309 |
| SaqAI | TTAA | 2 cut(s) | 249, 316 |
| SatI | GCNGC | 2 cut(s) | 15, 210 |
| SchI | GAGTC | 1 cut(s) | 104 |
| ScrFI | CCNGG | 1 cut(s) | 26 |
| SetI | ASST | 4 cut(s) | 202, 226, 235, 293 |
| SmlI | CTYRAG | 1 cut(s) | 178 |
| SmoI | CTYRAG | 1 cut(s) | 178 |
| SspMI | CTAG | 2 cut(s) | 221, 230 |
| StyD4I | CCNGG | 1 cut(s) | 24 |
| StyI | CCWWGG | 1 cut(s) | 120 |
| TaaI | ACNGT | 1 cut(s) | 36 |
| TatI | WGTACW | 2 cut(s) | 31, 308 |
| Tru1I | TTAA | 2 cut(s) | 249, 316 |
| Tru9I | TTAA | 2 cut(s) | 249, 316 |
| TseI | GCWGC | 2 cut(s) | 14, 209 |
| TspDTI | ATGAA | 2 cut(s) | 105, 246 |
| XceI | RCATGY | 1 cut(s) | 188 |
| XspI | CTAG | 2 cut(s) | 221, 230 |