Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Amidohydro_2 | PF04909 | 242 - 332 | 8.6e-09 | Amidohydrolase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 958 |
| AccI | GTMKAC | 1 cut(s) | 912 |
| AccII | CGCG | 1 cut(s) | 208 |
| AciI | CCGC | 3 cut(s) | 206, 208, 579 |
| AclWI | GGATC | 1 cut(s) | 514 |
| AcsI | RAATTY | 1 cut(s) | 191 |
| AcuI | CTGAAG | 1 cut(s) | 555 |
| AfaI | GTAC | 5 cut(s) | 139, 267, 350, 595, 1014 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 315, 326, 958 |
| AflIII | ACRYGT | 1 cut(s) | 598 |
| AgsI | TTSAA | 5 cut(s) | 67, 190, 314, 556, 1060 |
| AjnI | CCWGG | 4 cut(s) | 11, 406, 414, 906 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 237, 269, 294, 326 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 642, 674 |
| AluBI | AGCT | 7 cut(s) | 298, 426, 447, 566, 943, 988, 1053 |
| AluI | AGCT | 7 cut(s) | 298, 426, 447, 566, 943, 988, 1053 |
| AlwI | GGATC | 1 cut(s) | 514 |
| AoxI | GGCC | 2 cut(s) | 317, 816 |
| ApeKI | GCWGC | 5 cut(s) | 44, 47, 444, 566, 576 |
| ApoI | RAATTY | 1 cut(s) | 191 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1032 |
| AsuC2I | CCSGG | 2 cut(s) | 501, 803 |
| AsuII | TTCGAA | 1 cut(s) | 872 |
| AxyI | CCTNAGG | 1 cut(s) | 321 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 341, 373 |
| BbvI | GCAGC | 5 cut(s) | 31, 34, 456, 553, 588 |
| BccI | CCATC | 3 cut(s) | 320, 376, 952 |
| BciT130I | CCWGG | 4 cut(s) | 13, 408, 416, 908 |
| BcnI | CCSGG | 2 cut(s) | 501, 803 |
| BfaI | CTAG | 2 cut(s) | 606, 890 |
| BisI | GCNGC | 5 cut(s) | 45, 48, 445, 567, 577 |
| BlsI | GCNGC | 5 cut(s) | 46, 49, 446, 568, 578 |
| BmcAI | AGTACT | 1 cut(s) | 139 |
| Bme1390I | CCNGG | 6 cut(s) | 13, 408, 416, 501, 803, 908 |
| BmiI | GGNNCC | 1 cut(s) | 121 |
| BmrFI | CCNGG | 6 cut(s) | 13, 408, 416, 501, 803, 908 |
| BmrI | ACTGGG | 1 cut(s) | 278 |
| BmsI | GCATC | 4 cut(s) | 314, 465, 866, 890 |
| BmuI | ACTGGG | 1 cut(s) | 278 |
| BoxI | GACNNNNGTC | 1 cut(s) | 291 |
| Bpu14I | TTCGAA | 1 cut(s) | 872 |
| BpuEI | CTTGAG | 2 cut(s) | 796, 833 |
| BpuMI | CCSGG | 2 cut(s) | 501, 803 |
| BsaJI | CCNNGG | 3 cut(s) | 206, 906, 952 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 315, 326, 958 |
| Bse1I | ACTGG | 2 cut(s) | 155, 273 |
| Bse21I | CCTNAGG | 1 cut(s) | 321 |
| BseBI | CCWGG | 4 cut(s) | 13, 408, 416, 908 |
| BseDI | CCNNGG | 3 cut(s) | 206, 906, 952 |
| BseGI | GGATG | 7 cut(s) | 151, 240, 305, 331, 529, 857, 963 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 315, 326, 958 |
| BseMII | CTCAG | 3 cut(s) | 95, 624, 958 |
| BseNI | ACTGG | 2 cut(s) | 155, 273 |
| BseXI | GCAGC | 5 cut(s) | 31, 34, 456, 553, 588 |
| Bsh1236I | CGCG | 1 cut(s) | 208 |
| BshFI | GGCC | 2 cut(s) | 319, 818 |
| BsiSI | CCGG | 2 cut(s) | 500, 802 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 315, 326, 958 |
| BsnI | GGCC | 2 cut(s) | 319, 818 |
| Bsp119I | TTCGAA | 1 cut(s) | 872 |
| Bsp1407I | TGTACA | 1 cut(s) | 348 |
| Bsp143I | GATC | 4 cut(s) | 25, 229, 436, 506 |
| BspACI | CCGC | 3 cut(s) | 206, 208, 579 |
| BspANI | GGCC | 2 cut(s) | 319, 818 |
| BspCNI | CTCAG | 3 cut(s) | 96, 625, 957 |
| BspFNI | CGCG | 1 cut(s) | 208 |
| BspLI | GGNNCC | 1 cut(s) | 121 |
| BspPI | GGATC | 1 cut(s) | 514 |
| BspT104I | TTCGAA | 1 cut(s) | 872 |
| BsrGI | TGTACA | 1 cut(s) | 348 |
| BsrI | ACTGG | 2 cut(s) | 155, 273 |
| BssECI | CCNNGG | 3 cut(s) | 206, 906, 952 |
| BssMI | GATC | 4 cut(s) | 25, 229, 436, 506 |
| BssT1I | CCWWGG | 1 cut(s) | 952 |
| Bst2UI | CCWGG | 4 cut(s) | 13, 408, 416, 908 |
| Bst4CI | ACNGT | 1 cut(s) | 1012 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 496 |
| BstAUI | TGTACA | 1 cut(s) | 348 |
| BstBI | TTCGAA | 1 cut(s) | 872 |
| BstC8I | GCNNGC | 1 cut(s) | 990 |
| BstDEI | CTNAG | 5 cut(s) | 104, 233, 321, 633, 944 |
| BstDSI | CCRYGG | 1 cut(s) | 206 |
| BstF5I | GGATG | 7 cut(s) | 151, 240, 305, 331, 529, 857, 963 |
| BstFNI | CGCG | 1 cut(s) | 208 |
| BstKTI | GATC | 4 cut(s) | 28, 232, 439, 509 |
| BstMBI | GATC | 4 cut(s) | 25, 229, 436, 506 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 453, 496 |
| BstNI | CCWGG | 4 cut(s) | 13, 408, 416, 908 |
| BstNSI | RCATGY | 2 cut(s) | 602, 857 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 291 |
| BstSCI | CCNGG | 6 cut(s) | 11, 406, 414, 499, 801, 906 |
| BstUI | CGCG | 1 cut(s) | 208 |
| BstV1I | GCAGC | 5 cut(s) | 31, 34, 456, 553, 588 |
| BstX2I | RGATCY | 1 cut(s) | 506 |
| BstYI | RGATCY | 1 cut(s) | 506 |
| Bsu36I | CCTNAGG | 1 cut(s) | 321 |
| BsuRI | GGCC | 2 cut(s) | 319, 818 |
| BtgI | CCRYGG | 1 cut(s) | 206 |
| BtsCI | GGATG | 7 cut(s) | 151, 240, 305, 331, 529, 857, 963 |
| BtsIMutI | CAGTG | 2 cut(s) | 531, 952 |
| Cac8I | GCNNGC | 1 cut(s) | 990 |
| Cfr42I | CCGCGG | 1 cut(s) | 209 |
| Csp6I | GTAC | 5 cut(s) | 138, 266, 349, 594, 1013 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1048, 1083 |
| CviAII | CATG | 6 cut(s) | 86, 227, 257, 599, 854, 1088 |
| CviQI | GTAC | 5 cut(s) | 138, 266, 349, 594, 1013 |
| DdeI | CTNAG | 5 cut(s) | 104, 233, 321, 633, 944 |
| DpnI | GATC | 4 cut(s) | 27, 231, 438, 508 |
| DpnII | GATC | 4 cut(s) | 25, 229, 436, 506 |
| Eco130I | CCWWGG | 1 cut(s) | 952 |
| Eco147I | AGGCCT | 1 cut(s) | 319 |
| Eco57I | CTGAAG | 1 cut(s) | 555 |
| Eco81I | CCTNAGG | 1 cut(s) | 321 |
| EcoRII | CCWGG | 4 cut(s) | 11, 406, 414, 906 |
| EcoT14I | CCWWGG | 1 cut(s) | 952 |
| EcoT22I | ATGCAT | 1 cut(s) | 859 |
| ErhI | CCWWGG | 1 cut(s) | 952 |
| FaeI | CATG | 6 cut(s) | 89, 230, 260, 602, 857, 1091 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 294, 326 |
| FatI | CATG | 6 cut(s) | 85, 226, 256, 598, 853, 1087 |
| FblI | GTMKAC | 1 cut(s) | 912 |
| Fnu4HI | GCNGC | 5 cut(s) | 45, 48, 445, 567, 577 |
| FokI | GGATG | 7 cut(s) | 158, 227, 292, 338, 536, 844, 970 |
| Fsp4HI | GCNGC | 5 cut(s) | 45, 48, 445, 567, 577 |
| FspBI | CTAG | 2 cut(s) | 606, 890 |
| GluI | GCNGC | 5 cut(s) | 45, 48, 445, 567, 577 |
| HaeIII | GGCC | 2 cut(s) | 319, 818 |
| HapII | CCGG | 2 cut(s) | 500, 802 |
| Hin1II | CATG | 6 cut(s) | 89, 230, 260, 602, 857, 1091 |
| HinfI | GANTC | 3 cut(s) | 82, 403, 411 |
| HpaII | CCGG | 2 cut(s) | 500, 802 |
| Hpy166II | GTNNAC | 3 cut(s) | 531, 596, 913 |
| Hpy188I | TCNGA | 4 cut(s) | 105, 167, 367, 634 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 584 |
| Hpy8I | GTNNAC | 3 cut(s) | 531, 596, 913 |
| HpyAV | CCTTC | 6 cut(s) | 320, 491, 617, 803, 868, 997 |
| HpyCH4III | ACNGT | 1 cut(s) | 1012 |
| HpyCH4IV | ACGT | 1 cut(s) | 1074 |
| HpyCH4V | TGCA | 6 cut(s) | 77, 456, 490, 569, 739, 857 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 453, 496 |
| HpyF3I | CTNAG | 5 cut(s) | 104, 233, 321, 633, 944 |
| HpySE526I | ACGT | 1 cut(s) | 1074 |
| Hsp92II | CATG | 6 cut(s) | 89, 230, 260, 602, 857, 1091 |
| KspI | CCGCGG | 1 cut(s) | 209 |
| Kzo9I | GATC | 4 cut(s) | 25, 229, 436, 506 |
| LmnI | GCTCC | 3 cut(s) | 303, 985, 997 |
| Lsp1109I | GCAGC | 5 cut(s) | 31, 34, 456, 553, 588 |
| LweI | GCATC | 4 cut(s) | 314, 465, 866, 890 |
| MaeI | CTAG | 2 cut(s) | 606, 890 |
| MaeII | ACGT | 1 cut(s) | 1074 |
| MaeIII | GTNAC | 3 cut(s) | 157, 601, 1070 |
| MalI | GATC | 4 cut(s) | 27, 231, 438, 508 |
| MboI | GATC | 4 cut(s) | 25, 229, 436, 506 |
| MboII | GAAGA | 4 cut(s) | 20, 501, 957, 1048 |
| MflI | RGATCY | 1 cut(s) | 506 |
| MluCI | AATT | 5 cut(s) | 191, 471, 588, 996, 1028 |
| MlyI | GAGTC | 3 cut(s) | 91, 405, 412 |
| MmeI | TCCRAC | 2 cut(s) | 268, 1063 |
| MnlI | CCTC | 9 cut(s) | 161, 371, 613, 628, 703, 771, 808, 904, 926 |
| Mph1103I | ATGCAT | 1 cut(s) | 859 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1032 |
| MseI | TTAA | 3 cut(s) | 282, 336, 999 |
| MspA1I | CMGCKG | 2 cut(s) | 208, 579 |
| MspI | CCGG | 2 cut(s) | 500, 802 |
| MspR9I | CCNGG | 6 cut(s) | 13, 408, 416, 501, 803, 908 |
| MvaI | CCWGG | 4 cut(s) | 13, 408, 416, 908 |
| MvnI | CGCG | 1 cut(s) | 208 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 453, 496 |
| NciI | CCSGG | 2 cut(s) | 501, 803 |
| NdeII | GATC | 4 cut(s) | 25, 229, 436, 506 |
| NlaIII | CATG | 6 cut(s) | 89, 230, 260, 602, 857, 1091 |
| NlaIV | GGNNCC | 1 cut(s) | 121 |
| NmuCI | GTSAC | 1 cut(s) | 601 |
| NsiI | ATGCAT | 1 cut(s) | 859 |
| NspI | RCATGY | 2 cut(s) | 602, 857 |
| NspV | TTCGAA | 1 cut(s) | 872 |
| PceI | AGGCCT | 1 cut(s) | 319 |
| PciI | ACATGT | 1 cut(s) | 598 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1032 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 958 |
| PfoI | TCCNGGA | 1 cut(s) | 406 |
| PkrI | GCNGC | 5 cut(s) | 46, 49, 446, 568, 578 |
| PleI | GAGTC | 3 cut(s) | 90, 405, 411 |
| PpsI | GAGTC | 3 cut(s) | 90, 405, 411 |
| PscI | ACATGT | 1 cut(s) | 598 |
| PshAI | GACNNNNGTC | 1 cut(s) | 291 |
| Psp6I | CCWGG | 4 cut(s) | 11, 406, 414, 906 |
| PspGI | CCWGG | 4 cut(s) | 11, 406, 414, 906 |
| PspN4I | GGNNCC | 1 cut(s) | 121 |
| PsuI | RGATCY | 1 cut(s) | 506 |
| RsaI | GTAC | 5 cut(s) | 139, 267, 350, 595, 1014 |
| RsaNI | GTAC | 5 cut(s) | 138, 266, 349, 594, 1013 |
| SacII | CCGCGG | 1 cut(s) | 209 |
| SaqAI | TTAA | 3 cut(s) | 282, 336, 999 |
| SatI | GCNGC | 5 cut(s) | 45, 48, 445, 567, 577 |
| Sau3AI | GATC | 4 cut(s) | 25, 229, 436, 506 |
| ScaI | AGTACT | 1 cut(s) | 139 |
| SchI | GAGTC | 3 cut(s) | 91, 405, 412 |
| ScrFI | CCNGG | 6 cut(s) | 13, 408, 416, 501, 803, 908 |
| SfaNI | GCATC | 4 cut(s) | 314, 465, 866, 890 |
| Sfr303I | CCGCGG | 1 cut(s) | 209 |
| SfuI | TTCGAA | 1 cut(s) | 872 |
| SgrBI | CCGCGG | 1 cut(s) | 209 |
| SmlI | CTYRAG | 2 cut(s) | 775, 812 |
| SmoI | CTYRAG | 2 cut(s) | 775, 812 |
| Sse9I | AATT | 5 cut(s) | 191, 471, 588, 996, 1028 |
| SseBI | AGGCCT | 1 cut(s) | 319 |
| SsiI | CCGC | 3 cut(s) | 206, 208, 579 |
| SspI | AATATT | 1 cut(s) | 397 |
| SspMI | CTAG | 2 cut(s) | 606, 890 |
| StuI | AGGCCT | 1 cut(s) | 319 |
| StyD4I | CCNGG | 6 cut(s) | 11, 406, 414, 499, 801, 906 |
| StyI | CCWWGG | 1 cut(s) | 952 |
| TaaI | ACNGT | 1 cut(s) | 1012 |
| TaiI | ACGT | 1 cut(s) | 1077 |
| TaqI | TCGA | 3 cut(s) | 684, 872, 918 |
| TasI | AATT | 5 cut(s) | 191, 471, 588, 996, 1028 |
| TatI | WGTACW | 5 cut(s) | 137, 265, 348, 593, 1012 |
| Tru1I | TTAA | 3 cut(s) | 282, 336, 999 |
| Tru9I | TTAA | 3 cut(s) | 282, 336, 999 |
| TscAI | CASTG | 2 cut(s) | 538, 952 |
| TseFI | GTSAC | 1 cut(s) | 601 |
| TseI | GCWGC | 5 cut(s) | 44, 47, 444, 566, 576 |
| Tsp45I | GTSAC | 1 cut(s) | 601 |
| TspDTI | ATGAA | 4 cut(s) | 10, 245, 264, 785 |
| TspRI | CASTG | 2 cut(s) | 538, 952 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 958 |
| XapI | RAATTY | 1 cut(s) | 191 |
| XceI | RCATGY | 2 cut(s) | 602, 857 |
| XmiI | GTMKAC | 1 cut(s) | 912 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1032 |
| XspI | CTAG | 2 cut(s) | 606, 890 |
| ZrmI | AGTACT | 1 cut(s) | 139 |
| Zsp2I | ATGCAT | 1 cut(s) | 859 |