ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 119, 247 |
| AcuI | CTGAAG | 1 cut(s) | 200 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 193 |
| AgsI | TTSAA | 1 cut(s) | 127 |
| AleI | CACNNNNGTG | 1 cut(s) | 101 |
| AluBI | AGCT | 3 cut(s) | 160, 256, 272 |
| AluI | AGCT | 3 cut(s) | 160, 256, 272 |
| ApeKI | GCWGC | 1 cut(s) | 341 |
| AsuHPI | GGTGA | 2 cut(s) | 208, 302 |
| BbvI | GCAGC | 1 cut(s) | 328 |
| BccI | CCATC | 2 cut(s) | 141, 290 |
| BfaI | CTAG | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 342 |
| BlsI | GCNGC | 1 cut(s) | 343 |
| BmsI | GCATC | 1 cut(s) | 161 |
| BpuEI | CTTGAG | 2 cut(s) | 35, 236 |
| BsaBI | GATNNNNATC | 1 cut(s) | 151 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 193 |
| Bse1I | ACTGG | 2 cut(s) | 103, 292 |
| Bse8I | GATNNNNATC | 1 cut(s) | 151 |
| BseGI | GGATG | 1 cut(s) | 152 |
| BseJI | GATNNNNATC | 1 cut(s) | 151 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 193 |
| BseNI | ACTGG | 2 cut(s) | 103, 292 |
| BseXI | GCAGC | 1 cut(s) | 328 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 193 |
| BsrI | ACTGG | 2 cut(s) | 103, 292 |
| Bst4CI | ACNGT | 2 cut(s) | 59, 142 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 156 |
| BstF5I | GGATG | 1 cut(s) | 152 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 347 |
| BstNSI | RCATGY | 1 cut(s) | 8 |
| BstV1I | GCAGC | 1 cut(s) | 328 |
| BtsCI | GGATG | 1 cut(s) | 152 |
| BtsIMutI | CAGTG | 3 cut(s) | 64, 96, 261 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CviAII | CATG | 2 cut(s) | 5, 20 |
| CviJI | RGCY | 6 cut(s) | 160, 214, 256, 272, 308, 341 |
| CviKI_1 | RGCY | 6 cut(s) | 160, 214, 256, 272, 308, 341 |
| DdeI | CTNAG | 1 cut(s) | 156 |
| Eco57I | CTGAAG | 1 cut(s) | 200 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 2 cut(s) | 8, 23 |
| FaiI | YATR | 8 cut(s) | 6, 21, 72, 74, 109, 177, 194, 317 |
| FatI | CATG | 2 cut(s) | 4, 19 |
| FblI | GTMKAC | 2 cut(s) | 119, 247 |
| Fnu4HI | GCNGC | 1 cut(s) | 342 |
| FokI | GGATG | 1 cut(s) | 159 |
| Fsp4HI | GCNGC | 1 cut(s) | 342 |
| FspBI | CTAG | 1 cut(s) | 188 |
| GluI | GCNGC | 1 cut(s) | 342 |
| Hin1II | CATG | 2 cut(s) | 8, 23 |
| HincII | GTYRAC | 1 cut(s) | 120 |
| HindII | GTYRAC | 1 cut(s) | 120 |
| HindIII | AAGCTT | 1 cut(s) | 254 |
| HinfI | GANTC | 1 cut(s) | 249 |
| HphI | GGTGA | 2 cut(s) | 208, 302 |
| Hpy166II | GTNNAC | 3 cut(s) | 120, 184, 248 |
| Hpy188I | TCNGA | 3 cut(s) | 91, 219, 240 |
| Hpy188III | TCNNGA | 3 cut(s) | 52, 163, 363 |
| Hpy8I | GTNNAC | 3 cut(s) | 120, 184, 248 |
| HpyAV | CCTTC | 2 cut(s) | 140, 245 |
| HpyCH4III | ACNGT | 2 cut(s) | 59, 142 |
| HpyCH4IV | ACGT | 1 cut(s) | 279 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 19, 30, 350 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 347 |
| HpyF3I | CTNAG | 1 cut(s) | 156 |
| HpySE526I | ACGT | 1 cut(s) | 279 |
| Hsp92II | CATG | 2 cut(s) | 8, 23 |
| LmnI | GCTCC | 1 cut(s) | 165 |
| LpnPI | CCDG | 4 cut(s) | 84, 176, 196, 273 |
| Lsp1109I | GCAGC | 1 cut(s) | 328 |
| LweI | GCATC | 1 cut(s) | 161 |
| MaeI | CTAG | 1 cut(s) | 188 |
| MaeII | ACGT | 1 cut(s) | 279 |
| MaeIII | GTNAC | 1 cut(s) | 59 |
| MboII | GAAGA | 4 cut(s) | 211, 214, 217, 305 |
| MluCI | AATT | 1 cut(s) | 300 |
| MlyI | GAGTC | 1 cut(s) | 243 |
| MmeI | TCCRAC | 1 cut(s) | 124 |
| MnlI | CCTC | 3 cut(s) | 59, 105, 298 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 2 cut(s) | 135, 258 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 101 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 347 |
| NlaIII | CATG | 2 cut(s) | 8, 23 |
| NmuCI | GTSAC | 1 cut(s) | 59 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 8 |
| OliI | CACNNNNGTG | 1 cut(s) | 101 |
| PaeI | GCATGC | 1 cut(s) | 8 |
| PkrI | GCNGC | 1 cut(s) | 343 |
| PleI | GAGTC | 1 cut(s) | 243 |
| PpsI | GAGTC | 1 cut(s) | 243 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 101 |
| SalI | GTCGAC | 1 cut(s) | 118 |
| SaqAI | TTAA | 2 cut(s) | 135, 258 |
| SatI | GCNGC | 1 cut(s) | 342 |
| SchI | GAGTC | 1 cut(s) | 243 |
| SetI | ASST | 6 cut(s) | 132, 162, 189, 258, 274, 282 |
| SfaNI | GCATC | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 101 |
| SmlI | CTYRAG | 2 cut(s) | 50, 251 |
| SmoI | CTYRAG | 2 cut(s) | 50, 251 |
| SphI | GCATGC | 1 cut(s) | 8 |
| Sse9I | AATT | 1 cut(s) | 300 |
| SspMI | CTAG | 1 cut(s) | 188 |
| TaaI | ACNGT | 2 cut(s) | 59, 142 |
| TaiI | ACGT | 1 cut(s) | 282 |
| TaqI | TCGA | 1 cut(s) | 119 |
| TasI | AATT | 1 cut(s) | 300 |
| Tru1I | TTAA | 2 cut(s) | 135, 258 |
| Tru9I | TTAA | 2 cut(s) | 135, 258 |
| TscAI | CASTG | 3 cut(s) | 64, 103, 268 |
| TseFI | GTSAC | 1 cut(s) | 59 |
| TseI | GCWGC | 1 cut(s) | 341 |
| Tsp45I | GTSAC | 1 cut(s) | 59 |
| TspDTI | ATGAA | 1 cut(s) | 69 |
| TspRI | CASTG | 3 cut(s) | 64, 103, 268 |
| XceI | RCATGY | 1 cut(s) | 8 |
| XmiI | GTMKAC | 2 cut(s) | 119, 247 |
| XspI | CTAG | 1 cut(s) | 188 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |