Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 510 |
| AccB1I | GGYRCC | 1 cut(s) | 510 |
| AccBSI | CCGCTC | 1 cut(s) | 280 |
| AciI | CCGC | 3 cut(s) | 278, 341, 542 |
| AfaI | GTAC | 3 cut(s) | 322, 494, 512 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 261, 262 |
| AgsI | TTSAA | 4 cut(s) | 40, 112, 246, 535 |
| AhlI | ACTAGT | 1 cut(s) | 463 |
| AluBI | AGCT | 1 cut(s) | 441 |
| AluI | AGCT | 1 cut(s) | 441 |
| ApeKI | GCWGC | 2 cut(s) | 274, 445 |
| Asp718I | GGTACC | 1 cut(s) | 510 |
| AspS9I | GGNCC | 2 cut(s) | 265, 578 |
| AsuHPI | GGTGA | 1 cut(s) | 297 |
| AvaII | GGWCC | 2 cut(s) | 265, 578 |
| BanI | GGYRCC | 1 cut(s) | 510 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 409, 441, 476, 508 |
| BbvI | GCAGC | 2 cut(s) | 261, 457 |
| BccI | CCATC | 2 cut(s) | 400, 532 |
| BcuI | ACTAGT | 1 cut(s) | 463 |
| BfaI | CTAG | 2 cut(s) | 53, 464 |
| BglII | AGATCT | 1 cut(s) | 249 |
| BisI | GCNGC | 3 cut(s) | 275, 278, 446 |
| BlsI | GCNGC | 3 cut(s) | 276, 279, 447 |
| Bme18I | GGWCC | 2 cut(s) | 265, 578 |
| BmgT120I | GGNCC | 2 cut(s) | 265, 578 |
| BmiI | GGNNCC | 5 cut(s) | 266, 267, 512, 579, 580 |
| BmsI | GCATC | 2 cut(s) | 176, 343 |
| BpmI | CTGGAG | 1 cut(s) | 398 |
| BsaJI | CCNNGG | 1 cut(s) | 269 |
| BsaWI | WCCGGW | 1 cut(s) | 85 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 261, 262 |
| Bse1I | ACTGG | 1 cut(s) | 381 |
| Bse3DI | GCAATG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 1 cut(s) | 269 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 261, 262 |
| BseMI | GCAATG | 1 cut(s) | 31 |
| BseMII | CTCAG | 4 cut(s) | 116, 141, 315, 555 |
| BseNI | ACTGG | 1 cut(s) | 381 |
| BseXI | GCAGC | 2 cut(s) | 261, 457 |
| BshNI | GGYRCC | 1 cut(s) | 510 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BslFI | GGGAC | 2 cut(s) | 278, 564 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 261, 262 |
| BsmFI | GGGAC | 2 cut(s) | 278, 564 |
| Bsp143I | GATC | 1 cut(s) | 249 |
| BspACI | CCGC | 3 cut(s) | 278, 341, 542 |
| BspCNI | CTCAG | 4 cut(s) | 115, 142, 316, 556 |
| BspHI | TCATGA | 1 cut(s) | 141 |
| BspLI | GGNNCC | 5 cut(s) | 266, 267, 512, 579, 580 |
| BspQI | GCTCTTC | 1 cut(s) | 54 |
| BspT107I | GGYRCC | 1 cut(s) | 510 |
| BsrBI | CCGCTC | 1 cut(s) | 280 |
| BsrDI | GCAATG | 1 cut(s) | 31 |
| BsrI | ACTGG | 1 cut(s) | 381 |
| BssECI | CCNNGG | 1 cut(s) | 269 |
| BssMI | GATC | 1 cut(s) | 249 |
| Bst4CI | ACNGT | 1 cut(s) | 300 |
| Bst6I | CTCTTC | 2 cut(s) | 54, 479 |
| BstC8I | GCNNGC | 2 cut(s) | 443, 450 |
| BstDEI | CTNAG | 4 cut(s) | 102, 150, 324, 564 |
| BstDSI | CCRYGG | 1 cut(s) | 269 |
| BstKTI | GATC | 1 cut(s) | 252 |
| BstMBI | GATC | 1 cut(s) | 249 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 548 |
| BstNSI | RCATGY | 1 cut(s) | 452 |
| BstV1I | GCAGC | 2 cut(s) | 261, 457 |
| BstX2I | RGATCY | 1 cut(s) | 249 |
| BstYI | RGATCY | 1 cut(s) | 249 |
| BtgI | CCRYGG | 1 cut(s) | 269 |
| Cac8I | GCNNGC | 2 cut(s) | 443, 450 |
| CciI | TCATGA | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 2 cut(s) | 265, 578 |
| CseI | GACGC | 1 cut(s) | 575 |
| Csp6I | GTAC | 3 cut(s) | 321, 493, 511 |
| CviAII | CATG | 6 cut(s) | 13, 142, 177, 313, 449, 515 |
| CviJI | RGCY | 6 cut(s) | 47, 149, 194, 274, 441, 551 |
| CviKI_1 | RGCY | 6 cut(s) | 47, 149, 194, 274, 441, 551 |
| CviQI | GTAC | 3 cut(s) | 321, 493, 511 |
| DdeI | CTNAG | 4 cut(s) | 102, 150, 324, 564 |
| DpnI | GATC | 1 cut(s) | 251 |
| DpnII | GATC | 1 cut(s) | 249 |
| Eam1104I | CTCTTC | 2 cut(s) | 54, 479 |
| EarI | CTCTTC | 2 cut(s) | 54, 479 |
| EciI | GGCGGA | 2 cut(s) | 356, 557 |
| Eco47I | GGWCC | 2 cut(s) | 265, 578 |
| EcoO109I | RGGNCCY | 2 cut(s) | 265, 578 |
| EcoT22I | ATGCAT | 1 cut(s) | 33 |
| FaeI | CATG | 6 cut(s) | 16, 145, 180, 316, 452, 518 |
| FaqI | GGGAC | 2 cut(s) | 278, 564 |
| FatI | CATG | 6 cut(s) | 12, 141, 176, 312, 448, 514 |
| Fnu4HI | GCNGC | 3 cut(s) | 275, 278, 446 |
| Fsp4HI | GCNGC | 3 cut(s) | 275, 278, 446 |
| FspBI | CTAG | 2 cut(s) | 53, 464 |
| GluI | GCNGC | 3 cut(s) | 275, 278, 446 |
| GsuI | CTGGAG | 1 cut(s) | 398 |
| HapII | CCGG | 1 cut(s) | 86 |
| HgaI | GACGC | 1 cut(s) | 575 |
| Hin1II | CATG | 6 cut(s) | 16, 145, 180, 316, 452, 518 |
| HinfI | GANTC | 1 cut(s) | 89 |
| HpaII | CCGG | 1 cut(s) | 86 |
| HphI | GGTGA | 1 cut(s) | 297 |
| Hpy188I | TCNGA | 1 cut(s) | 565 |
| Hpy188III | TCNNGA | 2 cut(s) | 142, 502 |
| HpyAV | CCTTC | 5 cut(s) | 106, 139, 154, 328, 358 |
| HpyCH4III | ACNGT | 1 cut(s) | 300 |
| HpyCH4IV | ACGT | 1 cut(s) | 557 |
| HpyCH4V | TGCA | 4 cut(s) | 31, 356, 445, 452 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 548 |
| HpyF3I | CTNAG | 4 cut(s) | 102, 150, 324, 564 |
| HpySE526I | ACGT | 1 cut(s) | 557 |
| Hsp92II | CATG | 6 cut(s) | 16, 145, 180, 316, 452, 518 |
| KflI | GGGWCCC | 2 cut(s) | 265, 578 |
| KpnI | GGTACC | 1 cut(s) | 514 |
| Kzo9I | GATC | 1 cut(s) | 249 |
| LguI | GCTCTTC | 1 cut(s) | 54 |
| LmnI | GCTCC | 1 cut(s) | 285 |
| LpnPI | CCDG | 5 cut(s) | 99, 180, 215, 269, 362 |
| Lsp1109I | GCAGC | 2 cut(s) | 261, 457 |
| LweI | GCATC | 2 cut(s) | 176, 343 |
| MaeI | CTAG | 2 cut(s) | 53, 464 |
| MaeII | ACGT | 1 cut(s) | 557 |
| MaeIII | GTNAC | 2 cut(s) | 372, 587 |
| MalI | GATC | 1 cut(s) | 251 |
| MbiI | CCGCTC | 1 cut(s) | 280 |
| MboI | GATC | 1 cut(s) | 249 |
| MboII | GAAGA | 3 cut(s) | 41, 496, 547 |
| MflI | RGATCY | 1 cut(s) | 249 |
| MluCI | AATT | 6 cut(s) | 40, 96, 130, 392, 420, 526 |
| MnlI | CCTC | 7 cut(s) | 63, 204, 255, 310, 319, 403, 559 |
| Mph1103I | ATGCAT | 1 cut(s) | 33 |
| MseI | TTAA | 2 cut(s) | 95, 155 |
| MslI | CAYNNNNRTG | 2 cut(s) | 175, 404 |
| MspI | CCGG | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 548 |
| NdeII | GATC | 1 cut(s) | 249 |
| NlaIII | CATG | 6 cut(s) | 16, 145, 180, 316, 452, 518 |
| NlaIV | GGNNCC | 5 cut(s) | 266, 267, 512, 579, 580 |
| NmuCI | GTSAC | 1 cut(s) | 587 |
| NsiI | ATGCAT | 1 cut(s) | 33 |
| NspI | RCATGY | 1 cut(s) | 452 |
| PaeI | GCATGC | 1 cut(s) | 452 |
| PagI | TCATGA | 1 cut(s) | 141 |
| PciSI | GCTCTTC | 1 cut(s) | 54 |
| PfeI | GAWTC | 1 cut(s) | 89 |
| PkrI | GCNGC | 3 cut(s) | 276, 279, 447 |
| PpuMI | RGGWCCY | 2 cut(s) | 265, 578 |
| Psp5II | RGGWCCY | 2 cut(s) | 265, 578 |
| PspN4I | GGNNCC | 5 cut(s) | 266, 267, 512, 579, 580 |
| PspPI | GGNCC | 2 cut(s) | 265, 578 |
| PspPPI | RGGWCCY | 2 cut(s) | 265, 578 |
| PsuI | RGATCY | 1 cut(s) | 249 |
| RsaI | GTAC | 3 cut(s) | 322, 494, 512 |
| RsaNI | GTAC | 3 cut(s) | 321, 493, 511 |
| RseI | CAYNNNNRTG | 2 cut(s) | 175, 404 |
| SapI | GCTCTTC | 1 cut(s) | 54 |
| SaqAI | TTAA | 2 cut(s) | 95, 155 |
| SatI | GCNGC | 3 cut(s) | 275, 278, 446 |
| Sau3AI | GATC | 1 cut(s) | 249 |
| Sau96I | GGNCC | 2 cut(s) | 265, 578 |
| SetI | ASST | 8 cut(s) | 74, 234, 310, 339, 414, 443, 560, 570 |
| SfaNI | GCATC | 2 cut(s) | 176, 343 |
| SinI | GGWCC | 2 cut(s) | 265, 578 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 175, 404 |
| SpeI | ACTAGT | 1 cut(s) | 463 |
| SphI | GCATGC | 1 cut(s) | 452 |
| Sse9I | AATT | 6 cut(s) | 40, 96, 130, 392, 420, 526 |
| SsiI | CCGC | 3 cut(s) | 278, 341, 542 |
| SspI | AATATT | 1 cut(s) | 122 |
| SspMI | CTAG | 2 cut(s) | 53, 464 |
| TaaI | ACNGT | 1 cut(s) | 300 |
| TaiI | ACGT | 1 cut(s) | 560 |
| TasI | AATT | 6 cut(s) | 40, 96, 130, 392, 420, 526 |
| TatI | WGTACW | 1 cut(s) | 492 |
| TauI | GCSGC | 1 cut(s) | 280 |
| TfiI | GAWTC | 1 cut(s) | 89 |
| Tru1I | TTAA | 2 cut(s) | 95, 155 |
| Tru9I | TTAA | 2 cut(s) | 95, 155 |
| TseFI | GTSAC | 1 cut(s) | 587 |
| TseI | GCWGC | 2 cut(s) | 274, 445 |
| Tsp45I | GTSAC | 1 cut(s) | 587 |
| TspDTI | ATGAA | 6 cut(s) | 64, 68, 130, 158, 401, 405 |
| TspGWI | ACGGA | 1 cut(s) | 416 |
| VpaK11BI | GGWCC | 2 cut(s) | 265, 578 |
| XceI | RCATGY | 1 cut(s) | 452 |
| XspI | CTAG | 2 cut(s) | 53, 464 |
| Zsp2I | ATGCAT | 1 cut(s) | 33 |