Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 495 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 450 |
| AccI | GTMKAC | 2 cut(s) | 488, 636 |
| AccII | CGCG | 1 cut(s) | 600 |
| AciI | CCGC | 3 cut(s) | 598, 600, 615 |
| AclWI | GGATC | 1 cut(s) | 548 |
| AcoI | YGGCCR | 1 cut(s) | 673 |
| AcuI | CTGAAG | 1 cut(s) | 528 |
| AfaI | GTAC | 1 cut(s) | 804 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 165, 450, 604 |
| AgsI | TTSAA | 4 cut(s) | 10, 100, 389, 723 |
| AhlI | ACTAGT | 1 cut(s) | 82 |
| AjnI | CCWGG | 1 cut(s) | 586 |
| AluBI | AGCT | 4 cut(s) | 15, 203, 578, 651 |
| AluI | AGCT | 4 cut(s) | 15, 203, 578, 651 |
| Alw21I | GWGCWC | 1 cut(s) | 436 |
| Alw26I | GTCTC | 2 cut(s) | 145, 212 |
| AlwI | GGATC | 1 cut(s) | 548 |
| Ama87I | CYCGRG | 1 cut(s) | 646 |
| AoxI | GGCC | 3 cut(s) | 188, 593, 673 |
| ApaI | GGGCCC | 1 cut(s) | 597 |
| ApeKI | GCWGC | 1 cut(s) | 362 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 470 |
| AspS9I | GGNCC | 4 cut(s) | 325, 593, 594, 811 |
| AsuC2I | CCSGG | 2 cut(s) | 800, 843 |
| AsuHPI | GGTGA | 5 cut(s) | 563, 769, 828, 842, 857 |
| AvaI | CYCGRG | 1 cut(s) | 646 |
| AvaII | GGWCC | 2 cut(s) | 325, 811 |
| BaeGI | GKGCMC | 1 cut(s) | 597 |
| BanII | GRGCYC | 1 cut(s) | 597 |
| Bbv12I | GWGCWC | 1 cut(s) | 436 |
| BbvI | GCAGC | 1 cut(s) | 374 |
| BccI | CCATC | 4 cut(s) | 113, 163, 221, 452 |
| BceAI | ACGGC | 1 cut(s) | 75 |
| BciT130I | CCWGG | 1 cut(s) | 588 |
| BclI | TGATCA | 1 cut(s) | 847 |
| BcnI | CCSGG | 2 cut(s) | 800, 843 |
| BcoDI | GTCTC | 2 cut(s) | 145, 212 |
| BcuI | ACTAGT | 1 cut(s) | 82 |
| BfaI | CTAG | 5 cut(s) | 83, 186, 437, 504, 683 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 750 |
| BisI | GCNGC | 2 cut(s) | 363, 601 |
| BlsI | GCNGC | 2 cut(s) | 364, 602 |
| Bme1390I | CCNGG | 3 cut(s) | 588, 800, 843 |
| Bme18I | GGWCC | 2 cut(s) | 325, 811 |
| BmeT110I | CYCGRG | 1 cut(s) | 646 |
| BmgT120I | GGNCC | 4 cut(s) | 325, 593, 594, 811 |
| BmiI | GGNNCC | 4 cut(s) | 595, 596, 797, 812 |
| BmrFI | CCNGG | 3 cut(s) | 588, 800, 843 |
| BmsI | GCATC | 2 cut(s) | 420, 637 |
| BpuEI | CTTGAG | 1 cut(s) | 731 |
| BpuMI | CCSGG | 2 cut(s) | 800, 843 |
| BsaI | GGTCTC | 2 cut(s) | 145, 212 |
| BsaJI | CCNNGG | 2 cut(s) | 598, 660 |
| BsaWI | WCCGGW | 1 cut(s) | 631 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 803, 833 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 165, 450, 604 |
| Bse118I | RCCGGY | 1 cut(s) | 295 |
| Bse1I | ACTGG | 1 cut(s) | 856 |
| Bse3DI | GCAATG | 1 cut(s) | 365 |
| BseBI | CCWGG | 1 cut(s) | 588 |
| BseDI | CCNNGG | 2 cut(s) | 598, 660 |
| BseGI | GGATG | 4 cut(s) | 155, 411, 628, 884 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 165, 450, 604 |
| BseMI | GCAATG | 1 cut(s) | 365 |
| BseNI | ACTGG | 1 cut(s) | 856 |
| BseRI | GAGGAG | 1 cut(s) | 811 |
| BseSI | GKGCMC | 1 cut(s) | 597 |
| BseX3I | CGGCCG | 1 cut(s) | 673 |
| BseXI | GCAGC | 1 cut(s) | 374 |
| Bsh1236I | CGCG | 1 cut(s) | 600 |
| Bsh1285I | CGRYCG | 1 cut(s) | 676 |
| BshFI | GGCC | 3 cut(s) | 190, 595, 675 |
| BsiEI | CGRYCG | 1 cut(s) | 676 |
| BsiHKAI | GWGCWC | 1 cut(s) | 436 |
| BsiHKCI | CYCGRG | 1 cut(s) | 646 |
| BsiSI | CCGG | 5 cut(s) | 296, 458, 632, 799, 843 |
| BslFI | GGGAC | 2 cut(s) | 765, 824 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 165, 450, 604 |
| BsmAI | GTCTC | 2 cut(s) | 145, 212 |
| BsmFI | GGGAC | 2 cut(s) | 765, 824 |
| BsnI | GGCC | 3 cut(s) | 190, 595, 675 |
| Bso31I | GGTCTC | 2 cut(s) | 145, 212 |
| BsoBI | CYCGRG | 1 cut(s) | 646 |
| Bsp120I | GGGCCC | 1 cut(s) | 593 |
| Bsp1286I | GDGCHC | 2 cut(s) | 436, 597 |
| Bsp143I | GATC | 2 cut(s) | 553, 847 |
| Bsp19I | CCATGG | 1 cut(s) | 660 |
| BspACI | CCGC | 3 cut(s) | 598, 600, 615 |
| BspANI | GGCC | 3 cut(s) | 190, 595, 675 |
| BspFNI | CGCG | 1 cut(s) | 600 |
| BspLI | GGNNCC | 4 cut(s) | 595, 596, 797, 812 |
| BspPI | GGATC | 1 cut(s) | 548 |
| BspQI | GCTCTTC | 1 cut(s) | 424 |
| BspTNI | GGTCTC | 2 cut(s) | 145, 212 |
| BsrDI | GCAATG | 1 cut(s) | 365 |
| BsrFI | RCCGGY | 1 cut(s) | 295 |
| BsrI | ACTGG | 1 cut(s) | 856 |
| BssAI | RCCGGY | 1 cut(s) | 295 |
| BssECI | CCNNGG | 2 cut(s) | 598, 660 |
| BssMI | GATC | 2 cut(s) | 553, 847 |
| BssT1I | CCWWGG | 1 cut(s) | 660 |
| Bst2UI | CCWGG | 1 cut(s) | 588 |
| Bst4CI | ACNGT | 1 cut(s) | 307 |
| Bst6I | CTCTTC | 2 cut(s) | 280, 424 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 371 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 372 |
| BstDEI | CTNAG | 1 cut(s) | 419 |
| BstDSI | CCRYGG | 2 cut(s) | 598, 660 |
| BstF5I | GGATG | 4 cut(s) | 155, 411, 628, 884 |
| BstFNI | CGCG | 1 cut(s) | 600 |
| BstKTI | GATC | 2 cut(s) | 556, 850 |
| BstMAI | GTCTC | 2 cut(s) | 145, 212 |
| BstMBI | GATC | 2 cut(s) | 553, 847 |
| BstMCI | CGRYCG | 1 cut(s) | 676 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 41, 371, 609, 750 |
| BstNI | CCWGG | 1 cut(s) | 588 |
| BstNSI | RCATGY | 4 cut(s) | 23, 374, 628, 774 |
| BstSCI | CCNGG | 3 cut(s) | 586, 798, 841 |
| BstSLI | GKGCMC | 1 cut(s) | 597 |
| BstUI | CGCG | 1 cut(s) | 600 |
| BstV1I | GCAGC | 1 cut(s) | 374 |
| BstZI | CGGCCG | 1 cut(s) | 673 |
| BsuRI | GGCC | 3 cut(s) | 190, 595, 675 |
| BtgI | CCRYGG | 2 cut(s) | 598, 660 |
| BtsCI | GGATG | 4 cut(s) | 155, 411, 628, 884 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 372 |
| Cfr10I | RCCGGY | 1 cut(s) | 295 |
| Cfr13I | GGNCC | 4 cut(s) | 325, 593, 594, 811 |
| Cfr42I | CCGCGG | 1 cut(s) | 601 |
| Csp6I | GTAC | 1 cut(s) | 803 |
| CviQI | GTAC | 1 cut(s) | 803 |
| DdeI | CTNAG | 1 cut(s) | 419 |
| DpnI | GATC | 2 cut(s) | 555, 849 |
| DpnII | GATC | 2 cut(s) | 553, 847 |
| EaeI | YGGCCR | 1 cut(s) | 673 |
| EagI | CGGCCG | 1 cut(s) | 673 |
| Eam1104I | CTCTTC | 2 cut(s) | 280, 424 |
| EarI | CTCTTC | 2 cut(s) | 280, 424 |
| EclXI | CGGCCG | 1 cut(s) | 673 |
| Eco130I | CCWWGG | 1 cut(s) | 660 |
| Eco147I | AGGCCT | 1 cut(s) | 190 |
| Eco24I | GRGCYC | 1 cut(s) | 597 |
| Eco31I | GGTCTC | 2 cut(s) | 145, 212 |
| Eco32I | GATATC | 2 cut(s) | 680, 831 |
| Eco47I | GGWCC | 2 cut(s) | 325, 811 |
| Eco52I | CGGCCG | 1 cut(s) | 673 |
| Eco57I | CTGAAG | 1 cut(s) | 528 |
| Eco88I | CYCGRG | 1 cut(s) | 646 |
| EcoO109I | RGGNCCY | 2 cut(s) | 325, 594 |
| EcoRII | CCWGG | 1 cut(s) | 586 |
| EcoRV | GATATC | 2 cut(s) | 680, 831 |
| EcoT14I | CCWWGG | 1 cut(s) | 660 |
| EcoT22I | ATGCAT | 2 cut(s) | 166, 630 |
| EcoT38I | GRGCYC | 1 cut(s) | 597 |
| ErhI | CCWWGG | 1 cut(s) | 660 |
| FaqI | GGGAC | 2 cut(s) | 765, 824 |
| FauI | CCCGC | 2 cut(s) | 605, 622 |
| FauNDI | CATATG | 1 cut(s) | 559 |
| FbaI | TGATCA | 1 cut(s) | 847 |
| FblI | GTMKAC | 2 cut(s) | 488, 636 |
| Fnu4HI | GCNGC | 2 cut(s) | 363, 601 |
| FokI | GGATG | 4 cut(s) | 142, 398, 615, 871 |
| FriOI | GRGCYC | 1 cut(s) | 597 |
| Fsp4HI | GCNGC | 2 cut(s) | 363, 601 |
| FspBI | CTAG | 5 cut(s) | 83, 186, 437, 504, 683 |
| GluI | GCNGC | 2 cut(s) | 363, 601 |
| HaeIII | GGCC | 3 cut(s) | 190, 595, 675 |
| HapII | CCGG | 5 cut(s) | 296, 458, 632, 799, 843 |
| HinfI | GANTC | 3 cut(s) | 174, 262, 520 |
| HpaII | CCGG | 5 cut(s) | 296, 458, 632, 799, 843 |
| HphI | GGTGA | 5 cut(s) | 563, 769, 828, 842, 857 |
| Hpy166II | GTNNAC | 3 cut(s) | 489, 637, 760 |
| Hpy188I | TCNGA | 1 cut(s) | 426 |
| Hpy188III | TCNNGA | 4 cut(s) | 10, 116, 546, 723 |
| Hpy8I | GTNNAC | 3 cut(s) | 489, 637, 760 |
| HpyCH4III | ACNGT | 1 cut(s) | 307 |
| HpyCH4IV | ACGT | 1 cut(s) | 654 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 164, 370, 411, 628 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 41, 371, 609, 750 |
| HpyF3I | CTNAG | 1 cut(s) | 419 |
| HpySE526I | ACGT | 1 cut(s) | 654 |
| Ksp22I | TGATCA | 1 cut(s) | 847 |
| KspI | CCGCGG | 1 cut(s) | 601 |
| Kzo9I | GATC | 2 cut(s) | 553, 847 |
| LguI | GCTCTTC | 1 cut(s) | 424 |
| LmnI | GCTCC | 1 cut(s) | 568 |
| Lsp1109I | GCAGC | 1 cut(s) | 374 |
| LweI | GCATC | 2 cut(s) | 420, 637 |
| MaeI | CTAG | 5 cut(s) | 83, 186, 437, 504, 683 |
| MaeII | ACGT | 1 cut(s) | 654 |
| MaeIII | GTNAC | 3 cut(s) | 233, 394, 858 |
| MalI | GATC | 2 cut(s) | 555, 849 |
| MboI | GATC | 2 cut(s) | 553, 847 |
| MboII | GAAGA | 6 cut(s) | 183, 263, 267, 441, 531, 534 |
| MhlI | GDGCHC | 2 cut(s) | 436, 597 |
| MlyI | GAGTC | 1 cut(s) | 529 |
| MmeI | TCCRAC | 2 cut(s) | 202, 404 |
| Mph1103I | ATGCAT | 2 cut(s) | 166, 630 |
| MroXI | GAANNNNTTC | 1 cut(s) | 470 |
| MseI | TTAA | 1 cut(s) | 269 |
| MslI | CAYNNNNRTG | 2 cut(s) | 775, 889 |
| MspA1I | CMGCKG | 1 cut(s) | 600 |
| MspI | CCGG | 5 cut(s) | 296, 458, 632, 799, 843 |
| MspR9I | CCNGG | 3 cut(s) | 588, 800, 843 |
| MvaI | CCWGG | 1 cut(s) | 588 |
| MvnI | CGCG | 1 cut(s) | 600 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 41, 371, 609, 750 |
| NciI | CCSGG | 2 cut(s) | 800, 843 |
| NcoI | CCATGG | 1 cut(s) | 660 |
| NdeI | CATATG | 1 cut(s) | 559 |
| NdeII | GATC | 2 cut(s) | 553, 847 |
| NlaIV | GGNNCC | 4 cut(s) | 595, 596, 797, 812 |
| NmeAIII | GCCGAG | 1 cut(s) | 860 |
| NmuCI | GTSAC | 3 cut(s) | 233, 394, 858 |
| NsiI | ATGCAT | 2 cut(s) | 166, 630 |
| NspI | RCATGY | 4 cut(s) | 23, 374, 628, 774 |
| PaeI | GCATGC | 1 cut(s) | 374 |
| PceI | AGGCCT | 1 cut(s) | 190 |
| PciSI | GCTCTTC | 1 cut(s) | 424 |
| PdmI | GAANNNNTTC | 1 cut(s) | 470 |
| PfeI | GAWTC | 2 cut(s) | 174, 262 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 450 |
| PkrI | GCNGC | 2 cut(s) | 364, 602 |
| PleI | GAGTC | 1 cut(s) | 528 |
| PpsI | GAGTC | 1 cut(s) | 528 |
| PpuMI | RGGWCCY | 1 cut(s) | 325 |
| PsiI | TTATAA | 1 cut(s) | 495 |
| Psp5II | RGGWCCY | 1 cut(s) | 325 |
| Psp6I | CCWGG | 1 cut(s) | 586 |
| PspGI | CCWGG | 1 cut(s) | 586 |
| PspN4I | GGNNCC | 4 cut(s) | 595, 596, 797, 812 |
| PspOMI | GGGCCC | 1 cut(s) | 593 |
| PspPI | GGNCC | 4 cut(s) | 325, 593, 594, 811 |
| PspPPI | RGGWCCY | 1 cut(s) | 325 |
| RsaI | GTAC | 1 cut(s) | 804 |
| RsaNI | GTAC | 1 cut(s) | 803 |
| RseI | CAYNNNNRTG | 2 cut(s) | 775, 889 |
| SacII | CCGCGG | 1 cut(s) | 601 |
| SapI | GCTCTTC | 1 cut(s) | 424 |
| SaqAI | TTAA | 1 cut(s) | 269 |
| SatI | GCNGC | 2 cut(s) | 363, 601 |
| Sau3AI | GATC | 2 cut(s) | 553, 847 |
| Sau96I | GGNCC | 4 cut(s) | 325, 593, 594, 811 |
| SchI | GAGTC | 1 cut(s) | 529 |
| ScrFI | CCNGG | 3 cut(s) | 588, 800, 843 |
| SduI | GDGCHC | 2 cut(s) | 436, 597 |
| SfaNI | GCATC | 2 cut(s) | 420, 637 |
| Sfr303I | CCGCGG | 1 cut(s) | 601 |
| SgrBI | CCGCGG | 1 cut(s) | 601 |
| SinI | GGWCC | 2 cut(s) | 325, 811 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 775, 889 |
| SmlI | CTYRAG | 1 cut(s) | 746 |
| SmoI | CTYRAG | 1 cut(s) | 746 |
| SpeI | ACTAGT | 1 cut(s) | 82 |
| SphI | GCATGC | 1 cut(s) | 374 |
| SseBI | AGGCCT | 1 cut(s) | 190 |
| SsiI | CCGC | 3 cut(s) | 598, 600, 615 |
| SspMI | CTAG | 5 cut(s) | 83, 186, 437, 504, 683 |
| StuI | AGGCCT | 1 cut(s) | 190 |
| StyD4I | CCNGG | 3 cut(s) | 586, 798, 841 |
| StyI | CCWWGG | 1 cut(s) | 660 |
| TaaI | ACNGT | 1 cut(s) | 307 |
| TaiI | ACGT | 1 cut(s) | 657 |
| TaqII | GACCGA | 1 cut(s) | 654 |
| TauI | GCSGC | 1 cut(s) | 603 |
| TfiI | GAWTC | 2 cut(s) | 174, 262 |
| Tru1I | TTAA | 1 cut(s) | 269 |
| Tru9I | TTAA | 1 cut(s) | 269 |
| TseFI | GTSAC | 3 cut(s) | 233, 394, 858 |
| TseI | GCWGC | 1 cut(s) | 362 |
| Tsp45I | GTSAC | 3 cut(s) | 233, 394, 858 |
| TspDTI | ATGAA | 1 cut(s) | 52 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 450 |
| VpaK11BI | GGWCC | 2 cut(s) | 325, 811 |
| XceI | RCATGY | 4 cut(s) | 23, 374, 628, 774 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 162 |
| XmiI | GTMKAC | 2 cut(s) | 488, 636 |
| XmnI | GAANNNNTTC | 1 cut(s) | 470 |
| XspI | CTAG | 5 cut(s) | 83, 186, 437, 504, 683 |
| Zsp2I | ATGCAT | 2 cut(s) | 166, 630 |