Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1751 |
| Acc36I | ACCTGC | 1 cut(s) | 533 |
| Acc65I | GGTACC | 1 cut(s) | 862 |
| AccB1I | GGYRCC | 1 cut(s) | 862 |
| AccI | GTMKAC | 2 cut(s) | 355, 1008 |
| AciI | CCGC | 4 cut(s) | 319, 650, 697, 1390 |
| AclWI | GGATC | 4 cut(s) | 86, 759, 815, 960 |
| AcoI | YGGCCR | 1 cut(s) | 830 |
| AcsI | RAATTY | 1 cut(s) | 1745 |
| AdeI | CACNNNGTG | 1 cut(s) | 1661 |
| AfaI | GTAC | 4 cut(s) | 293, 582, 864, 901 |
| AfeI | AGCGCT | 1 cut(s) | 710 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 74, 318, 367, 1316 |
| AgsI | TTSAA | 6 cut(s) | 184, 785, 1040, 1327, 1362, 1529 |
| AhlI | ACTAGT | 2 cut(s) | 5, 902 |
| AjnI | CCWGG | 1 cut(s) | 865 |
| AleI | CACNNNNGTG | 1 cut(s) | 449 |
| Alw26I | GTCTC | 2 cut(s) | 1391, 1452 |
| AlwI | GGATC | 4 cut(s) | 86, 759, 815, 960 |
| Aor51HI | AGCGCT | 1 cut(s) | 710 |
| AoxI | GGCC | 1 cut(s) | 830 |
| ApeKI | GCWGC | 8 cut(s) | 470, 610, 1214, 1370, 1415, 1418, 1421, 1424 |
| ApoI | RAATTY | 1 cut(s) | 1745 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1286, 1318, 1331, 1363 |
| AseI | ATTAAT | 1 cut(s) | 324 |
| Asp718I | GGTACC | 1 cut(s) | 862 |
| AspLEI | GCGC | 4 cut(s) | 125, 574, 711, 1309 |
| AspS9I | GGNCC | 2 cut(s) | 522, 1152 |
| AsuHPI | GGTGA | 5 cut(s) | 49, 93, 101, 206, 677 |
| AsuII | TTCGAA | 1 cut(s) | 1105 |
| AvaII | GGWCC | 2 cut(s) | 522, 1152 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 846, 879 |
| BanI | GGYRCC | 1 cut(s) | 862 |
| BauI | CACGAG | 1 cut(s) | 1659 |
| BbsI | GAAGAC | 1 cut(s) | 993 |
| BbvCI | CCTCAGC | 1 cut(s) | 126 |
| BbvI | GCAGC | 8 cut(s) | 482, 597, 1201, 1382, 1405, 1411, 1427, 1433 |
| BccI | CCATC | 2 cut(s) | 76, 769 |
| BciT130I | CCWGG | 1 cut(s) | 867 |
| BciVI | GTATCC | 1 cut(s) | 546 |
| BcoDI | GTCTC | 2 cut(s) | 1391, 1452 |
| BcuI | ACTAGT | 2 cut(s) | 5, 902 |
| BfaI | CTAG | 7 cut(s) | 6, 903, 948, 956, 1412, 1559, 1584 |
| BfmI | CTRYAG | 4 cut(s) | 252, 468, 1215, 1419 |
| BfoI | RGCGCY | 1 cut(s) | 712 |
| BfuAI | ACCTGC | 1 cut(s) | 533 |
| BfuI | GTATCC | 1 cut(s) | 546 |
| BisI | GCNGC | 8 cut(s) | 471, 611, 1215, 1371, 1416, 1419, 1422, 1425 |
| BlsI | GCNGC | 8 cut(s) | 472, 612, 1216, 1372, 1417, 1420, 1423, 1426 |
| Bme1390I | CCNGG | 1 cut(s) | 867 |
| Bme18I | GGWCC | 2 cut(s) | 522, 1152 |
| BmgT120I | GGNCC | 2 cut(s) | 522, 1152 |
| BmiI | GGNNCC | 1 cut(s) | 864 |
| BmrFI | CCNGG | 1 cut(s) | 867 |
| BmrI | ACTGGG | 2 cut(s) | 797, 1410 |
| BmsI | GCATC | 2 cut(s) | 1201, 1747 |
| BmuI | ACTGGG | 2 cut(s) | 797, 1410 |
| BoxI | GACNNNNGTC | 1 cut(s) | 361 |
| BpiI | GAAGAC | 1 cut(s) | 993 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 293, 325 |
| BpmI | CTGGAG | 1 cut(s) | 1490 |
| Bpu10I | CCTNAGC | 1 cut(s) | 126 |
| Bpu14I | TTCGAA | 1 cut(s) | 1105 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1776 |
| BsaWI | WCCGGW | 2 cut(s) | 202, 311 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 698, 728, 1335, 1365 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 74, 318, 367, 1316 |
| Bse118I | RCCGGY | 1 cut(s) | 832 |
| Bse1I | ACTGG | 4 cut(s) | 792, 1249, 1405, 1507 |
| Bse3DI | GCAATG | 3 cut(s) | 634, 1339, 1399 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1776 |
| BseBI | CCWGG | 1 cut(s) | 867 |
| BseGI | GGATG | 3 cut(s) | 68, 1192, 1762 |
| BseJI | GATNNNNATC | 1 cut(s) | 1776 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 74, 318, 367, 1316 |
| BseMI | GCAATG | 3 cut(s) | 634, 1339, 1399 |
| BseMII | CTCAG | 2 cut(s) | 117, 176 |
| BseNI | ACTGG | 4 cut(s) | 792, 1249, 1405, 1507 |
| BseRI | GAGGAG | 2 cut(s) | 275, 278 |
| BseX3I | CGGCCG | 1 cut(s) | 830 |
| BseXI | GCAGC | 8 cut(s) | 482, 597, 1201, 1382, 1405, 1411, 1427, 1433 |
| BsgI | GTGCAG | 1 cut(s) | 561 |
| Bsh1285I | CGRYCG | 1 cut(s) | 833 |
| BshFI | GGCC | 1 cut(s) | 832 |
| BshNI | GGYRCC | 1 cut(s) | 862 |
| BsiEI | CGRYCG | 1 cut(s) | 833 |
| BsiSI | CCGG | 4 cut(s) | 203, 312, 829, 833 |
| BslFI | GGGAC | 2 cut(s) | 144, 868 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 74, 318, 367, 1316 |
| BsmAI | GTCTC | 2 cut(s) | 1391, 1452 |
| BsmBI | CGTCTC | 1 cut(s) | 1452 |
| BsmFI | GGGAC | 2 cut(s) | 144, 868 |
| BsnI | GGCC | 1 cut(s) | 832 |
| Bsp119I | TTCGAA | 1 cut(s) | 1105 |
| Bsp1407I | TGTACA | 1 cut(s) | 291 |
| Bsp143I | GATC | 6 cut(s) | 91, 751, 820, 920, 952, 1120 |
| BspACI | CCGC | 4 cut(s) | 319, 650, 697, 1390 |
| BspANI | GGCC | 1 cut(s) | 832 |
| BspCNI | CTCAG | 2 cut(s) | 118, 175 |
| BspLI | GGNNCC | 1 cut(s) | 864 |
| BspMAI | CTGCAG | 4 cut(s) | 256, 472, 1219, 1423 |
| BspMI | ACCTGC | 1 cut(s) | 533 |
| BspPI | GGATC | 4 cut(s) | 86, 759, 815, 960 |
| BspT104I | TTCGAA | 1 cut(s) | 1105 |
| BspT107I | GGYRCC | 1 cut(s) | 862 |
| BsrDI | GCAATG | 3 cut(s) | 634, 1339, 1399 |
| BsrFI | RCCGGY | 1 cut(s) | 832 |
| BsrGI | TGTACA | 1 cut(s) | 291 |
| BsrI | ACTGG | 4 cut(s) | 792, 1249, 1405, 1507 |
| BssAI | RCCGGY | 1 cut(s) | 832 |
| BssMI | GATC | 6 cut(s) | 91, 751, 820, 920, 952, 1120 |
| BssSI | CACGAG | 1 cut(s) | 1659 |
| Bst2BI | CACGAG | 1 cut(s) | 1659 |
| Bst2UI | CCWGG | 1 cut(s) | 867 |
| Bst4CI | ACNGT | 5 cut(s) | 19, 531, 580, 862, 1182 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1697 |
| BstAUI | TGTACA | 1 cut(s) | 291 |
| BstBI | TTCGAA | 1 cut(s) | 1105 |
| BstC8I | GCNNGC | 3 cut(s) | 404, 1487, 1689 |
| BstDEI | CTNAG | 4 cut(s) | 126, 162, 501, 1766 |
| BstF5I | GGATG | 3 cut(s) | 68, 1192, 1762 |
| BstH2I | RGCGCY | 1 cut(s) | 712 |
| BstHHI | GCGC | 4 cut(s) | 125, 574, 711, 1309 |
| BstKTI | GATC | 6 cut(s) | 94, 754, 823, 923, 955, 1123 |
| BstMAI | GTCTC | 2 cut(s) | 1391, 1452 |
| BstMBI | GATC | 6 cut(s) | 91, 751, 820, 920, 952, 1120 |
| BstMCI | CGRYCG | 1 cut(s) | 833 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 884, 1343, 1352, 1421, 1424, 1697, 1706 |
| BstNI | CCWGG | 1 cut(s) | 867 |
| BstNSI | RCATGY | 3 cut(s) | 887, 1489, 1700 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 361 |
| BstSCI | CCNGG | 1 cut(s) | 865 |
| BstSFI | CTRYAG | 4 cut(s) | 252, 468, 1215, 1419 |
| BstV1I | GCAGC | 8 cut(s) | 482, 597, 1201, 1382, 1405, 1411, 1427, 1433 |
| BstV2I | GAAGAC | 1 cut(s) | 993 |
| BstX2I | RGATCY | 2 cut(s) | 751, 952 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 451 |
| BstYI | RGATCY | 2 cut(s) | 751, 952 |
| BstZI | CGGCCG | 1 cut(s) | 830 |
| BsuI | GTATCC | 1 cut(s) | 546 |
| BsuRI | GGCC | 1 cut(s) | 832 |
| BtgZI | GCGATG | 1 cut(s) | 788 |
| BtsCI | GGATG | 3 cut(s) | 68, 1192, 1762 |
| BveI | ACCTGC | 1 cut(s) | 533 |
| Cac8I | GCNNGC | 3 cut(s) | 404, 1487, 1689 |
| CfoI | GCGC | 4 cut(s) | 125, 574, 711, 1309 |
| Cfr10I | RCCGGY | 1 cut(s) | 832 |
| Cfr13I | GGNCC | 2 cut(s) | 522, 1152 |
| CseI | GACGC | 1 cut(s) | 1478 |
| Csp6I | GTAC | 4 cut(s) | 292, 581, 863, 900 |
| CviAII | CATG | 7 cut(s) | 422, 449, 884, 888, 1468, 1486, 1697 |
| CviQI | GTAC | 4 cut(s) | 292, 581, 863, 900 |
| DdeI | CTNAG | 4 cut(s) | 126, 162, 501, 1766 |
| DpnI | GATC | 6 cut(s) | 93, 753, 822, 922, 954, 1122 |
| DpnII | GATC | 6 cut(s) | 91, 751, 820, 920, 952, 1120 |
| DraI | TTTAAA | 1 cut(s) | 486 |
| DraIII | CACNNNGTG | 1 cut(s) | 1661 |
| EaeI | YGGCCR | 1 cut(s) | 830 |
| EagI | CGGCCG | 1 cut(s) | 830 |
| EclXI | CGGCCG | 1 cut(s) | 830 |
| Eco32I | GATATC | 1 cut(s) | 431 |
| Eco47I | GGWCC | 2 cut(s) | 522, 1152 |
| Eco47III | AGCGCT | 1 cut(s) | 710 |
| Eco52I | CGGCCG | 1 cut(s) | 830 |
| EcoRII | CCWGG | 1 cut(s) | 865 |
| EcoRV | GATATC | 1 cut(s) | 431 |
| EcoT22I | ATGCAT | 1 cut(s) | 889 |
| Esp3I | CGTCTC | 1 cut(s) | 1452 |
| FaeI | CATG | 7 cut(s) | 425, 452, 887, 891, 1471, 1489, 1700 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 480, 512, 978, 1010 |
| FaqI | GGGAC | 2 cut(s) | 144, 868 |
| FatI | CATG | 7 cut(s) | 421, 448, 883, 887, 1467, 1485, 1696 |
| FauI | CCCGC | 1 cut(s) | 643 |
| FblI | GTMKAC | 2 cut(s) | 355, 1008 |
| Fnu4HI | GCNGC | 8 cut(s) | 471, 611, 1215, 1371, 1416, 1419, 1422, 1425 |
| FokI | GGATG | 3 cut(s) | 55, 1199, 1769 |
| Fsp4HI | GCNGC | 8 cut(s) | 471, 611, 1215, 1371, 1416, 1419, 1422, 1425 |
| FspBI | CTAG | 7 cut(s) | 6, 903, 948, 956, 1412, 1559, 1584 |
| GlaI | GCGC | 4 cut(s) | 124, 573, 710, 1308 |
| GluI | GCNGC | 8 cut(s) | 471, 611, 1215, 1371, 1416, 1419, 1422, 1425 |
| GsuI | CTGGAG | 1 cut(s) | 1490 |
| HaeII | RGCGCY | 1 cut(s) | 712 |
| HaeIII | GGCC | 1 cut(s) | 832 |
| HapII | CCGG | 4 cut(s) | 203, 312, 829, 833 |
| HgaI | GACGC | 1 cut(s) | 1478 |
| HhaI | GCGC | 4 cut(s) | 125, 574, 711, 1309 |
| Hin1II | CATG | 7 cut(s) | 425, 452, 887, 891, 1471, 1489, 1700 |
| Hin6I | GCGC | 4 cut(s) | 123, 572, 709, 1307 |
| HinP1I | GCGC | 4 cut(s) | 123, 572, 709, 1307 |
| HincII | GTYRAC | 3 cut(s) | 272, 356, 1009 |
| HindII | GTYRAC | 3 cut(s) | 272, 356, 1009 |
| HindIII | AAGCTT | 1 cut(s) | 1685 |
| HinfI | GANTC | 5 cut(s) | 688, 808, 989, 1358, 1630 |
| HpaII | CCGG | 4 cut(s) | 203, 312, 829, 833 |
| HphI | GGTGA | 5 cut(s) | 49, 93, 101, 206, 677 |
| Hpy166II | GTNNAC | 4 cut(s) | 272, 294, 356, 1009 |
| Hpy188I | TCNGA | 3 cut(s) | 1053, 1082, 1613 |
| Hpy188III | TCNNGA | 6 cut(s) | 72, 1317, 1362, 1634, 1661, 1742 |
| Hpy8I | GTNNAC | 4 cut(s) | 272, 294, 356, 1009 |
| Hpy99I | CGWCG | 1 cut(s) | 1010 |
| HpyAV | CCTTC | 2 cut(s) | 450, 1359 |
| HpyCH4III | ACNGT | 5 cut(s) | 19, 531, 580, 862, 1182 |
| HpyCH4IV | ACGT | 1 cut(s) | 1268 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 884, 1343, 1352, 1421, 1424, 1697, 1706 |
| HpyF3I | CTNAG | 4 cut(s) | 126, 162, 501, 1766 |
| HpySE526I | ACGT | 1 cut(s) | 1268 |
| Hsp92II | CATG | 7 cut(s) | 425, 452, 887, 891, 1471, 1489, 1700 |
| HspAI | GCGC | 4 cut(s) | 123, 572, 709, 1307 |
| KpnI | GGTACC | 1 cut(s) | 866 |
| Kzo9I | GATC | 6 cut(s) | 91, 751, 820, 920, 952, 1120 |
| LmnI | GCTCC | 5 cut(s) | 205, 706, 1343, 1432, 1744 |
| Lsp1109I | GCAGC | 8 cut(s) | 482, 597, 1201, 1382, 1405, 1411, 1427, 1433 |
| LweI | GCATC | 2 cut(s) | 1201, 1747 |
| MaeI | CTAG | 7 cut(s) | 6, 903, 948, 956, 1412, 1559, 1584 |
| MaeII | ACGT | 1 cut(s) | 1268 |
| MaeIII | GTNAC | 4 cut(s) | 23, 157, 665, 1269 |
| MalI | GATC | 6 cut(s) | 93, 753, 822, 922, 954, 1122 |
| MboI | GATC | 6 cut(s) | 91, 751, 820, 920, 952, 1120 |
| MboII | GAAGA | 2 cut(s) | 998, 1174 |
| MflI | RGATCY | 2 cut(s) | 751, 952 |
| MluCI | AATT | 7 cut(s) | 78, 325, 586, 598, 1124, 1193, 1745 |
| MlyI | GAGTC | 2 cut(s) | 802, 983 |
| MmeI | TCCRAC | 3 cut(s) | 149, 497, 1458 |
| Mph1103I | ATGCAT | 1 cut(s) | 889 |
| MseI | TTAA | 8 cut(s) | 174, 324, 485, 561, 747, 765, 1547, 1641 |
| MslI | CAYNNNNRTG | 3 cut(s) | 449, 892, 1472 |
| MspA1I | CMGCKG | 3 cut(s) | 319, 1418, 1424 |
| MspI | CCGG | 4 cut(s) | 203, 312, 829, 833 |
| MspR9I | CCNGG | 1 cut(s) | 867 |
| MvaI | CCWGG | 1 cut(s) | 867 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 884, 1343, 1352, 1421, 1424, 1697, 1706 |
| NdeII | GATC | 6 cut(s) | 91, 751, 820, 920, 952, 1120 |
| NlaIII | CATG | 7 cut(s) | 425, 452, 887, 891, 1471, 1489, 1700 |
| NlaIV | GGNNCC | 1 cut(s) | 864 |
| NmuCI | GTSAC | 3 cut(s) | 157, 665, 1269 |
| NsiI | ATGCAT | 1 cut(s) | 889 |
| NspI | RCATGY | 3 cut(s) | 887, 1489, 1700 |
| NspV | TTCGAA | 1 cut(s) | 1105 |
| OliI | CACNNNNGTG | 1 cut(s) | 449 |
| PaeI | GCATGC | 1 cut(s) | 1489 |
| PfeI | GAWTC | 3 cut(s) | 688, 1358, 1630 |
| PkrI | GCNGC | 8 cut(s) | 472, 612, 1216, 1372, 1417, 1420, 1423, 1426 |
| PleI | GAGTC | 2 cut(s) | 802, 983 |
| PpsI | GAGTC | 2 cut(s) | 802, 983 |
| PshAI | GACNNNNGTC | 1 cut(s) | 361 |
| PshBI | ATTAAT | 1 cut(s) | 324 |
| PsiI | TTATAA | 1 cut(s) | 1751 |
| Psp6I | CCWGG | 1 cut(s) | 865 |
| PspGI | CCWGG | 1 cut(s) | 865 |
| PspN4I | GGNNCC | 1 cut(s) | 864 |
| PspPI | GGNCC | 2 cut(s) | 522, 1152 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 275, 307 |
| PstI | CTGCAG | 4 cut(s) | 256, 472, 1219, 1423 |
| PsuI | RGATCY | 2 cut(s) | 751, 952 |
| PvuII | CAGCTG | 2 cut(s) | 1418, 1424 |
| RsaI | GTAC | 4 cut(s) | 293, 582, 864, 901 |
| RsaNI | GTAC | 4 cut(s) | 292, 581, 863, 900 |
| RseI | CAYNNNNRTG | 3 cut(s) | 449, 892, 1472 |
| SalI | GTCGAC | 2 cut(s) | 354, 1007 |
| SaqAI | TTAA | 8 cut(s) | 174, 324, 485, 561, 747, 765, 1547, 1641 |
| SatI | GCNGC | 8 cut(s) | 471, 611, 1215, 1371, 1416, 1419, 1422, 1425 |
| Sau3AI | GATC | 6 cut(s) | 91, 751, 820, 920, 952, 1120 |
| Sau96I | GGNCC | 2 cut(s) | 522, 1152 |
| SchI | GAGTC | 2 cut(s) | 802, 983 |
| ScrFI | CCNGG | 1 cut(s) | 867 |
| SfaNI | GCATC | 2 cut(s) | 1201, 1747 |
| SfcI | CTRYAG | 4 cut(s) | 252, 468, 1215, 1419 |
| SfuI | TTCGAA | 1 cut(s) | 1105 |
| SinI | GGWCC | 2 cut(s) | 522, 1152 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 449, 892, 1472 |
| SpeI | ACTAGT | 2 cut(s) | 5, 902 |
| SphI | GCATGC | 1 cut(s) | 1489 |
| Sse9I | AATT | 7 cut(s) | 78, 325, 586, 598, 1124, 1193, 1745 |
| SsiI | CCGC | 4 cut(s) | 319, 650, 697, 1390 |
| SspMI | CTAG | 7 cut(s) | 6, 903, 948, 956, 1412, 1559, 1584 |
| StyD4I | CCNGG | 1 cut(s) | 865 |
| TaaI | ACNGT | 5 cut(s) | 19, 531, 580, 862, 1182 |
| TaiI | ACGT | 1 cut(s) | 1271 |
| TaqI | TCGA | 3 cut(s) | 355, 1008, 1105 |
| TasI | AATT | 7 cut(s) | 78, 325, 586, 598, 1124, 1193, 1745 |
| TatI | WGTACW | 2 cut(s) | 291, 899 |
| TfiI | GAWTC | 3 cut(s) | 688, 1358, 1630 |
| Tru1I | TTAA | 8 cut(s) | 174, 324, 485, 561, 747, 765, 1547, 1641 |
| Tru9I | TTAA | 8 cut(s) | 174, 324, 485, 561, 747, 765, 1547, 1641 |
| TseFI | GTSAC | 3 cut(s) | 157, 665, 1269 |
| TseI | GCWGC | 8 cut(s) | 470, 610, 1214, 1370, 1415, 1418, 1421, 1424 |
| Tsp45I | GTSAC | 3 cut(s) | 157, 665, 1269 |
| TspDTI | ATGAA | 3 cut(s) | 611, 680, 986 |
| TspGWI | ACGGA | 4 cut(s) | 686, 813, 1356, 1475 |
| VpaK11BI | GGWCC | 2 cut(s) | 522, 1152 |
| VspI | ATTAAT | 1 cut(s) | 324 |
| XapI | RAATTY | 1 cut(s) | 1745 |
| XceI | RCATGY | 3 cut(s) | 887, 1489, 1700 |
| XmiI | GTMKAC | 2 cut(s) | 355, 1008 |
| XspI | CTAG | 7 cut(s) | 6, 903, 948, 956, 1412, 1559, 1584 |
| Zsp2I | ATGCAT | 1 cut(s) | 889 |