ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 156 |
| AccII | CGCG | 1 cut(s) | 654 |
| AciI | CCGC | 5 cut(s) | 57, 457, 534, 654, 658 |
| AclI | AACGTT | 1 cut(s) | 34 |
| AcsI | RAATTY | 1 cut(s) | 710 |
| AcuI | CTGAAG | 2 cut(s) | 179, 377 |
| AfaI | GTAC | 1 cut(s) | 170 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 241, 506 |
| AflIII | ACRYGT | 1 cut(s) | 61 |
| AgsI | TTSAA | 3 cut(s) | 7, 339, 630 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 251 |
| AjnI | CCWGG | 1 cut(s) | 689 |
| AleI | CACNNNNGTG | 1 cut(s) | 327 |
| AluBI | AGCT | 4 cut(s) | 251, 269, 351, 391 |
| AluI | AGCT | 4 cut(s) | 251, 269, 351, 391 |
| Alw26I | GTCTC | 1 cut(s) | 112 |
| Ama87I | CYCGRG | 2 cut(s) | 150, 641 |
| AoxI | GGCC | 2 cut(s) | 78, 659 |
| ApeKI | GCWGC | 3 cut(s) | 231, 560, 670 |
| ApoI | RAATTY | 1 cut(s) | 710 |
| AspA2I | CCTAGG | 1 cut(s) | 377 |
| AspLEI | GCGC | 1 cut(s) | 654 |
| AspS9I | GGNCC | 2 cut(s) | 78, 660 |
| AsuII | TTCGAA | 1 cut(s) | 176 |
| AvaI | CYCGRG | 2 cut(s) | 150, 641 |
| AvrII | CCTAGG | 1 cut(s) | 377 |
| BanII | GRGCYC | 1 cut(s) | 151 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 152, 184 |
| BbsI | GAAGAC | 2 cut(s) | 283, 433 |
| BbvI | GCAGC | 3 cut(s) | 243, 572, 657 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 627, 661 |
| BciT130I | CCWGG | 1 cut(s) | 691 |
| BcoDI | GTCTC | 1 cut(s) | 112 |
| BfaI | CTAG | 2 cut(s) | 54, 378 |
| BfuAI | ACCTGC | 1 cut(s) | 156 |
| BisI | GCNGC | 5 cut(s) | 232, 534, 561, 659, 671 |
| BlnI | CCTAGG | 1 cut(s) | 377 |
| BlsI | GCNGC | 5 cut(s) | 233, 535, 562, 660, 672 |
| Bme1390I | CCNGG | 1 cut(s) | 691 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 251 |
| BmeT110I | CYCGRG | 2 cut(s) | 150, 641 |
| BmgT120I | GGNCC | 2 cut(s) | 78, 660 |
| BmiI | GGNNCC | 1 cut(s) | 697 |
| BmrFI | CCNGG | 1 cut(s) | 691 |
| BmsI | GCATC | 3 cut(s) | 444, 520, 726 |
| BpiI | GAAGAC | 2 cut(s) | 283, 433 |
| BpmI | CTGGAG | 1 cut(s) | 260 |
| Bpu14I | TTCGAA | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 4 cut(s) | 74, 377, 564, 690 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 241, 506 |
| Bse1I | ACTGG | 1 cut(s) | 485 |
| Bse3DI | GCAATG | 2 cut(s) | 292, 442 |
| BseBI | CCWGG | 1 cut(s) | 691 |
| BseDI | CCNNGG | 4 cut(s) | 74, 377, 564, 690 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 241, 506 |
| BseMI | GCAATG | 2 cut(s) | 292, 442 |
| BseNI | ACTGG | 1 cut(s) | 485 |
| BseXI | GCAGC | 3 cut(s) | 243, 572, 657 |
| BseYI | CCCAGC | 1 cut(s) | 414 |
| BsgI | GTGCAG | 1 cut(s) | 621 |
| Bsh1236I | CGCG | 1 cut(s) | 654 |
| BshFI | GGCC | 2 cut(s) | 80, 661 |
| BsiHKCI | CYCGRG | 2 cut(s) | 150, 641 |
| BslFI | GGGAC | 2 cut(s) | 258, 304 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 241, 506 |
| BsmAI | GTCTC | 1 cut(s) | 112 |
| BsmFI | GGGAC | 2 cut(s) | 258, 304 |
| BsnI | GGCC | 2 cut(s) | 80, 661 |
| BsoBI | CYCGRG | 2 cut(s) | 150, 641 |
| Bsp119I | TTCGAA | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 1 cut(s) | 151 |
| Bsp143I | GATC | 1 cut(s) | 419 |
| Bsp19I | CCATGG | 1 cut(s) | 564 |
| BspACI | CCGC | 5 cut(s) | 57, 457, 534, 654, 658 |
| BspANI | GGCC | 2 cut(s) | 80, 661 |
| BspFNI | CGCG | 1 cut(s) | 654 |
| BspLI | GGNNCC | 1 cut(s) | 697 |
| BspMI | ACCTGC | 1 cut(s) | 156 |
| BspT104I | TTCGAA | 1 cut(s) | 176 |
| BsrDI | GCAATG | 2 cut(s) | 292, 442 |
| BsrI | ACTGG | 1 cut(s) | 485 |
| BssECI | CCNNGG | 4 cut(s) | 74, 377, 564, 690 |
| BssMI | GATC | 1 cut(s) | 419 |
| BssT1I | CCWWGG | 2 cut(s) | 377, 564 |
| Bst2UI | CCWGG | 1 cut(s) | 691 |
| Bst4CI | ACNGT | 1 cut(s) | 593 |
| BstBI | TTCGAA | 1 cut(s) | 176 |
| BstC8I | GCNNGC | 2 cut(s) | 411, 656 |
| BstDEI | CTNAG | 1 cut(s) | 198 |
| BstDSI | CCRYGG | 2 cut(s) | 74, 564 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstFNI | CGCG | 1 cut(s) | 654 |
| BstHHI | GCGC | 1 cut(s) | 654 |
| BstKTI | GATC | 1 cut(s) | 422 |
| BstMAI | GTCTC | 1 cut(s) | 112 |
| BstMBI | GATC | 1 cut(s) | 419 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 221, 415, 658, 667, 714 |
| BstNI | CCWGG | 1 cut(s) | 691 |
| BstNSI | RCATGY | 1 cut(s) | 65 |
| BstSCI | CCNGG | 1 cut(s) | 689 |
| BstUI | CGCG | 1 cut(s) | 654 |
| BstV1I | GCAGC | 3 cut(s) | 243, 572, 657 |
| BstV2I | GAAGAC | 2 cut(s) | 283, 433 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 329 |
| BsuRI | GGCC | 2 cut(s) | 80, 661 |
| BtgI | CCRYGG | 2 cut(s) | 74, 564 |
| BveI | ACCTGC | 1 cut(s) | 156 |
| Cac8I | GCNNGC | 2 cut(s) | 411, 656 |
| CfoI | GCGC | 1 cut(s) | 654 |
| Cfr13I | GGNCC | 2 cut(s) | 78, 660 |
| Csp6I | GTAC | 1 cut(s) | 169 |
| CviAII | CATG | 4 cut(s) | 28, 62, 565, 667 |
| CviQI | GTAC | 1 cut(s) | 169 |
| DdeI | CTNAG | 1 cut(s) | 198 |
| DpnI | GATC | 1 cut(s) | 421 |
| DpnII | GATC | 1 cut(s) | 419 |
| DriI | GACNNNNNGTC | 1 cut(s) | 251 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 251 |
| Eco130I | CCWWGG | 2 cut(s) | 377, 564 |
| Eco24I | GRGCYC | 1 cut(s) | 151 |
| Eco32I | GATATC | 1 cut(s) | 687 |
| Eco57I | CTGAAG | 2 cut(s) | 179, 377 |
| Eco88I | CYCGRG | 2 cut(s) | 150, 641 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoRII | CCWGG | 1 cut(s) | 689 |
| EcoRV | GATATC | 1 cut(s) | 687 |
| EcoT14I | CCWWGG | 2 cut(s) | 377, 564 |
| EcoT38I | GRGCYC | 1 cut(s) | 151 |
| ErhI | CCWWGG | 2 cut(s) | 377, 564 |
| FaeI | CATG | 4 cut(s) | 31, 65, 568, 670 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 509, 541 |
| FaqI | GGGAC | 2 cut(s) | 258, 304 |
| FatI | CATG | 4 cut(s) | 27, 61, 564, 666 |
| FauI | CCCGC | 1 cut(s) | 647 |
| Fnu4HI | GCNGC | 5 cut(s) | 232, 534, 561, 659, 671 |
| FriOI | GRGCYC | 1 cut(s) | 151 |
| Fsp4HI | GCNGC | 5 cut(s) | 232, 534, 561, 659, 671 |
| FspBI | CTAG | 2 cut(s) | 54, 378 |
| GlaI | GCGC | 1 cut(s) | 653 |
| GluI | GCNGC | 5 cut(s) | 232, 534, 561, 659, 671 |
| GsaI | CCCAGC | 1 cut(s) | 418 |
| GsuI | CTGGAG | 1 cut(s) | 260 |
| HaeIII | GGCC | 2 cut(s) | 80, 661 |
| HhaI | GCGC | 1 cut(s) | 654 |
| Hin1II | CATG | 4 cut(s) | 31, 65, 568, 670 |
| Hin6I | GCGC | 1 cut(s) | 652 |
| HinP1I | GCGC | 1 cut(s) | 652 |
| HincII | GTYRAC | 1 cut(s) | 87 |
| HindII | GTYRAC | 1 cut(s) | 87 |
| HinfI | GANTC | 5 cut(s) | 137, 313, 463, 550, 644 |
| Hpy166II | GTNNAC | 3 cut(s) | 87, 209, 604 |
| Hpy188I | TCNGA | 4 cut(s) | 159, 589, 649, 722 |
| Hpy188III | TCNNGA | 4 cut(s) | 239, 295, 445, 554 |
| Hpy8I | GTNNAC | 3 cut(s) | 87, 209, 604 |
| HpyAV | CCTTC | 5 cut(s) | 154, 172, 196, 245, 673 |
| HpyCH4III | ACNGT | 1 cut(s) | 593 |
| HpyCH4IV | ACGT | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 4 cut(s) | 638, 673, 717, 732 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 221, 415, 658, 667, 714 |
| HpyF3I | CTNAG | 1 cut(s) | 198 |
| HpySE526I | ACGT | 1 cut(s) | 34 |
| Hsp92II | CATG | 4 cut(s) | 31, 65, 568, 670 |
| HspAI | GCGC | 1 cut(s) | 652 |
| Kzo9I | GATC | 1 cut(s) | 419 |
| LmnI | GCTCC | 4 cut(s) | 228, 266, 388, 649 |
| Lsp1109I | GCAGC | 3 cut(s) | 243, 572, 657 |
| LweI | GCATC | 3 cut(s) | 444, 520, 726 |
| MaeI | CTAG | 2 cut(s) | 54, 378 |
| MaeII | ACGT | 1 cut(s) | 34 |
| MalI | GATC | 1 cut(s) | 421 |
| MboI | GATC | 1 cut(s) | 419 |
| MboII | GAAGA | 2 cut(s) | 283, 433 |
| MfeI | CAATTG | 1 cut(s) | 674 |
| MhlI | GDGCHC | 1 cut(s) | 151 |
| MluCI | AATT | 4 cut(s) | 279, 429, 674, 710 |
| MlyI | GAGTC | 1 cut(s) | 653 |
| MmeI | TCCRAC | 1 cut(s) | 627 |
| MnlI | CCTC | 5 cut(s) | 235, 303, 453, 510, 709 |
| MseI | TTAA | 1 cut(s) | 39 |
| MslI | CAYNNNNRTG | 3 cut(s) | 327, 569, 737 |
| MspR9I | CCNGG | 1 cut(s) | 691 |
| MunI | CAATTG | 1 cut(s) | 674 |
| MvaI | CCWGG | 1 cut(s) | 691 |
| MvnI | CGCG | 1 cut(s) | 654 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 221, 415, 658, 667, 714 |
| NcoI | CCATGG | 1 cut(s) | 564 |
| NdeII | GATC | 1 cut(s) | 419 |
| NlaIII | CATG | 4 cut(s) | 31, 65, 568, 670 |
| NlaIV | GGNNCC | 1 cut(s) | 697 |
| NspI | RCATGY | 1 cut(s) | 65 |
| NspV | TTCGAA | 1 cut(s) | 176 |
| OliI | CACNNNNGTG | 1 cut(s) | 327 |
| PaeR7I | CTCGAG | 2 cut(s) | 150, 641 |
| PciI | ACATGT | 1 cut(s) | 61 |
| PfeI | GAWTC | 4 cut(s) | 137, 313, 463, 550 |
| PkrI | GCNGC | 5 cut(s) | 233, 535, 562, 660, 672 |
| PleI | GAGTC | 1 cut(s) | 652 |
| PpsI | GAGTC | 1 cut(s) | 652 |
| PscI | ACATGT | 1 cut(s) | 61 |
| Psp1406I | AACGTT | 1 cut(s) | 34 |
| Psp6I | CCWGG | 1 cut(s) | 689 |
| PspFI | CCCAGC | 1 cut(s) | 414 |
| PspGI | CCWGG | 1 cut(s) | 689 |
| PspN4I | GGNNCC | 1 cut(s) | 697 |
| PspPI | GGNCC | 2 cut(s) | 78, 660 |
| PspXI | VCTCGAGB | 2 cut(s) | 150, 641 |
| RsaI | GTAC | 1 cut(s) | 170 |
| RsaNI | GTAC | 1 cut(s) | 169 |
| RseI | CAYNNNNRTG | 3 cut(s) | 327, 569, 737 |
| SaqAI | TTAA | 1 cut(s) | 39 |
| SatI | GCNGC | 5 cut(s) | 232, 534, 561, 659, 671 |
| Sau3AI | GATC | 1 cut(s) | 419 |
| Sau96I | GGNCC | 2 cut(s) | 78, 660 |
| SchI | GAGTC | 1 cut(s) | 653 |
| ScrFI | CCNGG | 1 cut(s) | 691 |
| SduI | GDGCHC | 1 cut(s) | 151 |
| SetI | ASST | 9 cut(s) | 37, 105, 136, 170, 189, 253, 271, 353, 393 |
| SfaNI | GCATC | 3 cut(s) | 444, 520, 726 |
| Sfr274I | CTCGAG | 2 cut(s) | 150, 641 |
| SfuI | TTCGAA | 1 cut(s) | 176 |
| SlaI | CTCGAG | 2 cut(s) | 150, 641 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 327, 569, 737 |
| SmlI | CTYRAG | 2 cut(s) | 150, 641 |
| SmoI | CTYRAG | 2 cut(s) | 150, 641 |
| Sse9I | AATT | 4 cut(s) | 279, 429, 674, 710 |
| SsiI | CCGC | 5 cut(s) | 57, 457, 534, 654, 658 |
| SspMI | CTAG | 2 cut(s) | 54, 378 |
| StyD4I | CCNGG | 1 cut(s) | 689 |
| StyI | CCWWGG | 2 cut(s) | 377, 564 |
| TaaI | ACNGT | 1 cut(s) | 593 |
| TaiI | ACGT | 1 cut(s) | 37 |
| TaqI | TCGA | 3 cut(s) | 151, 176, 642 |
| TasI | AATT | 4 cut(s) | 279, 429, 674, 710 |
| TauI | GCSGC | 2 cut(s) | 536, 661 |
| TfiI | GAWTC | 4 cut(s) | 137, 313, 463, 550 |
| Tru1I | TTAA | 1 cut(s) | 39 |
| Tru9I | TTAA | 1 cut(s) | 39 |
| TseI | GCWGC | 3 cut(s) | 231, 560, 670 |
| TspDTI | ATGAA | 3 cut(s) | 16, 356, 655 |
| TspGWI | ACGGA | 2 cut(s) | 63, 460 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 710 |
| XceI | RCATGY | 1 cut(s) | 65 |
| XhoI | CTCGAG | 2 cut(s) | 150, 641 |
| XmaJI | CCTAGG | 1 cut(s) | 377 |
| XspI | CTAG | 2 cut(s) | 54, 378 |